Wall clock time and date at job start Tue Mar 31 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 N 1.46497 * 109.46918 * 179.97438 * 3 2 1 5 5 N 1.28441 * 125.19186 * 274.51425 * 4 3 2 6 6 C 1.30868 * 110.92695 * 180.16380 * 5 4 3 7 7 C 1.39672 * 107.85908 * 359.60972 * 6 5 4 8 8 C 1.36600 * 125.18891 * 94.24714 * 4 3 2 9 9 C 1.47167 * 126.88177 * 359.97438 * 8 4 3 10 10 O 1.21621 * 119.99964 * 354.41865 * 9 8 4 11 11 N 1.34784 * 119.99619 * 174.41575 * 9 8 4 12 12 C 1.46502 * 119.99747 * 185.11479 * 11 9 8 13 13 C 1.52994 * 109.47229 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47182 * 295.00183 * 13 12 11 15 15 C 1.52995 * 109.47129 * 174.99728 * 13 12 11 16 16 N 1.46506 * 109.47035 * 54.99587 * 13 12 11 17 17 C 1.36940 * 119.99774 * 205.00014 * 16 13 12 18 18 H 1.07999 * 119.99953 * 0.02562 * 17 16 13 19 19 C 1.38810 * 119.99952 * 179.97438 * 17 16 13 20 20 N 1.31631 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00327 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47231 * 90.00020 * 21 19 17 23 23 H 1.48502 * 109.47416 * 210.00010 * 21 19 17 24 24 H 1.48504 * 109.47133 * 329.99847 * 21 19 17 25 25 H 1.08997 * 109.47505 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47296 * 300.00117 * 1 2 3 27 27 H 1.09007 * 109.47479 * 59.99534 * 1 2 3 28 28 H 1.08995 * 109.46880 * 240.00455 * 2 1 3 29 29 H 1.08996 * 109.47148 * 120.00049 * 2 1 3 30 30 H 1.09003 * 109.46655 * 60.00586 * 3 2 1 31 31 H 1.08996 * 109.47210 * 300.00011 * 3 2 1 32 32 H 1.07994 * 126.07053 * 179.87647 * 6 5 4 33 33 H 1.08005 * 127.31714 * 180.25076 * 7 6 5 34 34 H 0.96994 * 119.99842 * 5.10946 * 11 9 8 35 35 H 1.09005 * 109.46450 * 299.99794 * 12 11 9 36 36 H 1.09002 * 109.47260 * 59.99442 * 12 11 9 37 37 H 1.09003 * 109.47054 * 299.99652 * 15 13 12 38 38 H 1.08997 * 109.47231 * 60.00458 * 15 13 12 39 39 H 1.09010 * 109.46977 * 180.02562 * 15 13 12 40 40 H 0.96999 * 120.00013 * 25.00406 * 16 13 12 41 41 H 0.96996 * 119.99922 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.2447 1.3601 1.0473 6 6 5.5132 1.3889 0.7267 7 6 5.6014 1.4918 -0.6634 8 6 4.2926 1.5250 -1.1124 9 6 3.8401 1.6280 -2.5090 10 8 2.6557 1.5443 -2.7722 11 7 4.7384 1.8152 -3.4962 12 6 4.2813 2.0297 -4.8715 13 6 5.4920 2.2143 -5.7884 14 1 6.0196 3.1278 -5.5141 15 6 5.0213 2.3137 -7.2408 16 7 6.3930 1.0681 -5.6444 17 6 7.7255 1.2047 -5.9291 18 1 8.1122 2.1574 -6.2594 19 6 8.5793 0.1189 -5.7921 20 7 8.1081 -1.0422 -5.3890 21 14 10.3970 0.3052 -6.1798 22 1 11.1253 0.7163 -4.9526 23 1 10.9354 -0.9913 -6.6640 24 1 10.5756 1.3389 -7.2310 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 6.3442 1.3374 1.4144 33 1 6.4999 1.5358 -1.2611 34 1 5.6875 1.8079 -3.2962 35 1 3.7037 1.1660 -5.2011 36 1 3.6561 2.9217 -4.9116 37 1 4.4938 1.4001 -7.5151 38 1 4.3510 3.1665 -7.3480 39 1 5.8840 2.4448 -7.8942 40 1 6.0457 0.2125 -5.3474 41 1 8.7046 -1.8010 -5.2936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713312801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:57 Heat of formation + Delta-G solvation = 20.188690 kcal Electronic energy + Delta-G solvation = -22012.836533 eV Core-core repulsion = 18735.649000 eV Total energy + Delta-G solvation = -3277.187533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -43.54238 -40.48137 -37.92298 -36.45228 -35.20757 -33.74079 -32.50039 -31.91152 -30.47225 -27.64752 -27.20909 -25.67084 -23.97331 -23.11035 -22.25466 -21.72274 -20.78908 -19.44126 -18.86042 -17.30692 -17.13735 -16.82684 -16.59948 -16.18177 -16.01221 -15.57738 -15.32871 -14.90610 -14.84117 -14.25765 -14.09522 -13.91831 -13.63590 -13.41714 -13.13043 -13.03669 -12.97625 -12.74965 -12.48733 -12.35504 -12.15682 -11.90788 -11.81502 -11.68776 -11.64217 -11.15786 -10.93214 -10.36793 -10.04810 -9.95225 -9.00127 -7.88898 -5.18033 0.19589 1.36876 1.52511 1.53385 1.60915 1.62194 2.14444 2.24818 2.60333 3.45099 3.52338 3.58352 3.81051 3.90659 3.98528 3.99467 4.13874 4.21905 4.41202 4.43909 4.50606 4.63346 4.65832 4.73694 4.76146 4.84306 4.87391 5.02980 5.08850 5.10354 5.27493 5.28168 5.35108 5.51982 5.59302 5.59830 5.74342 6.31441 6.43037 6.99375 7.08723 7.39238 8.11256 8.35418 9.33653 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.004327 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.643917 B = 6469.377607 C = 7330.533871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.113 3.887 4 N -0.261 5.261 5 N -0.293 5.293 6 C -0.004 4.004 7 C -0.185 4.185 8 C -0.057 4.057 9 C 0.586 3.414 10 O -0.571 6.571 11 N -0.693 5.693 12 C 0.125 3.875 13 C 0.158 3.842 14 H 0.062 0.938 15 C -0.155 4.155 16 N -0.732 5.732 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.965 3.035 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.217 0.783 33 H 0.171 0.829 34 H 0.413 0.587 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 7.378 10.204 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.006 4.006 4 N -0.049 5.049 5 N -0.125 5.125 6 C -0.180 4.180 7 C -0.215 4.215 8 C -0.185 4.185 9 C 0.372 3.628 10 O -0.452 6.452 11 N -0.344 5.344 12 C 0.001 3.999 13 C 0.050 3.950 14 H 0.080 0.920 15 C -0.215 4.215 16 N -0.374 5.374 17 C -0.365 4.365 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.197 1.197 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.188 0.812 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.204 0.796 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.606 7.381 10.838 18.189 hybrid contribution 2.100 -0.713 -0.936 2.407 sum -10.506 6.668 9.903 15.903 Atomic orbital electron populations 1.21636 0.92056 1.03143 1.02983 1.21753 0.98654 0.94447 1.01795 1.22440 0.71753 1.00265 1.06177 1.45993 1.08205 1.49123 1.01612 1.73143 1.04990 1.20308 1.14097 1.24102 0.93791 1.04854 0.95207 1.22612 0.95762 1.06672 0.96412 1.21483 0.92351 1.14911 0.89783 1.17060 0.85493 0.76573 0.83664 1.90714 1.17085 1.52987 1.84453 1.45669 1.10457 1.70795 1.07471 1.21690 0.96873 1.01684 0.79648 1.20705 0.89374 0.91333 0.93601 0.91970 1.22235 1.00738 1.01275 0.97273 1.42621 1.04782 1.09373 1.80578 1.19567 0.85271 0.95897 1.35803 0.90314 1.25424 1.01694 0.95699 1.03314 1.69820 1.35305 1.01444 1.55148 0.85263 0.81227 0.76143 0.77821 1.21346 1.23097 1.19703 0.91326 0.90553 0.92279 0.93689 0.91408 0.86587 0.87399 0.76625 0.81178 0.75019 0.92590 0.89310 0.93899 0.90636 0.93661 0.79564 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.13 -2.87 6.26 30.60 0.19 -2.67 16 3 C 0.11 2.66 5.86 86.38 0.51 3.17 16 4 N -0.26 -7.52 3.35 -334.69 -1.12 -8.64 16 5 N -0.29 -8.23 11.90 -57.14 -0.68 -8.91 16 6 C 0.00 -0.11 12.03 85.18 1.02 0.91 16 7 C -0.19 -5.22 10.50 22.66 0.24 -4.98 16 8 C -0.06 -1.78 6.96 40.79 0.28 -1.50 16 9 C 0.59 19.67 7.78 86.59 0.67 20.35 16 10 O -0.57 -20.74 14.68 -4.10 -0.06 -20.80 16 11 N -0.69 -22.56 5.38 -466.62 -2.51 -25.07 16 12 C 0.13 3.93 5.24 86.38 0.45 4.39 16 13 C 0.16 5.49 3.05 44.99 0.14 5.62 16 14 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 15 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 16 N -0.73 -33.19 4.56 -322.95 -1.47 -34.66 16 17 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 18 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 19 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 20 N -0.97 -56.47 13.06 21.65 0.28 -56.19 16 21 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.11 2.75 6.20 -2.39 -0.01 2.74 16 32 H 0.22 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.17 4.46 7.59 -2.91 -0.02 4.44 16 34 H 0.41 13.75 7.17 -92.71 -0.66 13.08 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.37 18.79 7.80 -92.71 -0.72 18.07 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -63.75 346.91 2.32 -61.43 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -0.35 Total: 41.57 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.21 Total: 5.27 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -5.50 Total: -133.47 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.75 2.32 -61.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713312801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.623 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds