Wall clock time and date at job start Tue Mar 31 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47173 * 54.99094 * 14 13 12 16 16 C 1.52990 * 109.47677 * 174.99718 * 14 13 12 17 17 N 1.46507 * 109.46904 * 295.00238 * 14 13 12 18 18 C 1.36931 * 120.00260 * 154.99908 * 17 14 13 19 19 H 1.08008 * 120.00148 * 359.97438 * 18 17 14 20 20 C 1.38813 * 120.00147 * 179.97438 * 18 17 14 21 21 N 1.31613 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99828 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47544 * 60.00267 * 22 20 18 24 24 H 1.48503 * 109.46844 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47458 * 299.99768 * 22 20 18 26 26 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 27 27 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 29 29 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 30 30 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 31 31 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 32 32 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 34 34 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 35 35 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 36 36 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 37 37 H 1.09001 * 109.47239 * 179.97438 * 16 14 13 38 38 H 1.09000 * 109.47398 * 299.99836 * 16 14 13 39 39 H 1.08997 * 109.47286 * 59.99919 * 16 14 13 40 40 H 0.96993 * 119.99514 * 334.98906 * 17 14 13 41 41 H 0.96995 * 120.00635 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 1.5626 2.6215 -7.4418 16 6 2.8702 4.1678 -8.1765 17 7 3.5254 1.8925 -7.5641 18 6 3.2651 1.0147 -8.5823 19 1 2.3627 1.1178 -9.1667 20 6 4.1611 -0.0076 -8.8634 21 7 5.2611 -0.1329 -8.1516 22 14 3.8057 -1.2054 -10.2520 23 1 3.6975 -0.4610 -11.5325 24 1 4.9091 -2.1947 -10.3468 25 1 2.5283 -1.9124 -9.9810 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9953 4.1458 1.3744 32 1 2.7792 3.5312 -3.2764 33 1 2.9597 1.3748 -5.0914 34 1 1.2817 1.9687 -5.0909 35 1 2.0913 4.2549 -5.6080 36 1 3.7691 3.6606 -5.6083 37 1 2.7633 3.8667 -9.2186 38 1 2.1668 4.9708 -7.9561 39 1 3.8876 4.5181 -8.0025 40 1 4.3357 1.7999 -7.0391 41 1 5.8870 -0.8474 -8.3477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713421298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:47 Heat of formation + Delta-G solvation = 13.911165 kcal Electronic energy + Delta-G solvation = -21581.192808 eV Core-core repulsion = 18303.733061 eV Total energy + Delta-G solvation = -3277.459747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.40596 -39.22023 -36.64599 -34.84704 -33.95624 -32.42844 -32.03957 -29.78119 -28.89148 -27.98946 -24.53042 -23.74793 -23.05311 -22.45652 -21.05526 -20.17453 -19.51715 -18.75702 -17.23485 -16.22724 -15.86541 -15.77723 -15.18198 -14.82579 -14.54851 -14.05973 -13.88541 -13.84932 -13.51599 -13.45390 -12.95875 -12.53607 -12.38323 -12.09325 -11.59558 -11.48170 -11.16995 -11.00420 -10.93531 -10.75987 -10.66027 -10.52556 -10.33017 -10.21781 -10.04896 -9.75285 -9.64555 -9.04719 -8.90121 -8.60849 -6.97040 -5.75740 -3.04874 1.17308 2.65973 2.69254 3.17681 3.31450 3.45726 3.50499 3.51089 4.23339 4.60352 4.66181 4.84680 5.00928 5.21788 5.32712 5.44063 5.48412 5.52358 5.52948 5.62832 5.65549 5.82664 5.99765 6.02569 6.12468 6.20408 6.25009 6.27859 6.34013 6.38900 6.46999 6.57885 6.64538 6.82022 6.96558 7.01991 7.44400 7.70738 7.74530 8.20247 8.42362 9.53822 10.09591 10.44159 11.46787 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.003588 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.930220 B = 7802.346000 C = 8604.141899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.098 3.902 4 N -0.498 5.498 5 C 0.214 3.786 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.588 3.412 10 O -0.514 6.514 11 N -0.728 5.728 12 C 0.123 3.877 13 C -0.132 4.132 14 C 0.175 3.825 15 H 0.050 0.950 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.214 0.786 32 H 0.388 0.612 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 11.182 16.457 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.036 4.036 4 N -0.218 5.218 5 C -0.070 4.070 6 N -0.161 5.161 7 H 0.260 0.740 8 C -0.202 4.202 9 C 0.373 3.627 10 O -0.389 6.389 11 N -0.378 5.378 12 C 0.000 4.000 13 C -0.171 4.171 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.224 4.224 17 N -0.365 5.365 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.231 0.769 32 H 0.221 0.779 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.415 9.942 16.876 20.611 hybrid contribution 0.716 0.731 -1.565 1.870 sum -5.699 10.673 15.311 19.515 Atomic orbital electron populations 1.21605 0.94409 1.01828 1.01619 1.20079 0.96219 0.88724 1.03868 1.21061 0.98868 0.97054 0.86574 1.70121 1.18423 1.02695 1.30558 1.25112 1.01847 0.98005 0.82061 1.43337 1.50786 1.13207 1.08806 0.73993 1.21101 1.15623 0.88047 0.95406 1.16828 0.78268 0.85115 0.82452 1.90864 1.45861 1.19509 1.82660 1.46028 1.68228 1.16113 1.07463 1.21515 1.02481 0.99005 0.76956 1.22068 1.01393 0.96776 0.96883 1.20142 0.94737 0.89059 0.89649 0.93218 1.22427 1.00070 0.98270 1.01603 1.42438 1.23610 1.30997 1.39497 1.19173 1.04168 1.05745 1.08094 0.91246 1.24718 0.97014 0.99345 0.99639 1.69635 1.11818 1.34551 1.42076 0.86293 0.77125 0.80958 0.81961 1.21363 1.21726 1.21189 0.92577 0.92131 0.93064 0.88555 0.90687 0.76934 0.77907 0.89361 0.91460 0.92008 0.91661 0.92648 0.94607 0.93560 0.78313 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.66 5.93 -27.88 -0.17 -0.82 16 3 C 0.10 1.32 6.40 -82.51 -0.53 0.80 16 4 N -0.50 -6.10 11.20 -10.64 -0.12 -6.22 16 5 C 0.21 1.76 13.01 -90.57 -1.18 0.58 16 6 N -0.56 -4.51 6.07 -10.79 -0.07 -4.58 16 7 H 0.42 1.87 8.32 -40.82 -0.34 1.53 16 8 C -0.09 -1.08 7.08 -82.14 -0.58 -1.66 16 9 C 0.59 8.79 7.79 -12.82 -0.10 8.69 16 10 O -0.51 -9.63 14.82 5.20 0.08 -9.55 16 11 N -0.73 -9.33 5.55 -61.60 -0.34 -9.67 16 12 C 0.12 1.95 5.56 -4.04 -0.02 1.93 16 13 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 14 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.16 -2.77 9.49 37.15 0.35 -2.42 16 17 N -0.72 -17.41 4.57 -53.42 -0.24 -17.65 16 18 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 1.41 6.48 -51.93 -0.34 1.08 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.39 3.53 7.72 -40.82 -0.31 3.21 16 33 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -34.38 346.25 -8.53 -42.91 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.33 Total: 9.72 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.43 Total: -0.29 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -0.05 Total: -65.47 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.38 -8.53 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713421298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.825 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds