Wall clock time and date at job start Tue Mar 31 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47173 * 54.99094 * 14 13 12 16 16 C 1.52990 * 109.47677 * 174.99718 * 14 13 12 17 17 N 1.46507 * 109.46904 * 295.00238 * 14 13 12 18 18 C 1.36931 * 120.00260 * 154.99908 * 17 14 13 19 19 H 1.08008 * 120.00148 * 359.97438 * 18 17 14 20 20 C 1.38813 * 120.00147 * 179.97438 * 18 17 14 21 21 N 1.31613 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99828 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47544 * 60.00267 * 22 20 18 24 24 H 1.48503 * 109.46844 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47458 * 299.99768 * 22 20 18 26 26 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 27 27 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 29 29 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 30 30 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 31 31 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 32 32 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 34 34 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 35 35 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 36 36 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 37 37 H 1.09001 * 109.47239 * 179.97438 * 16 14 13 38 38 H 1.09000 * 109.47398 * 299.99836 * 16 14 13 39 39 H 1.08997 * 109.47286 * 59.99919 * 16 14 13 40 40 H 0.96993 * 119.99514 * 334.98906 * 17 14 13 41 41 H 0.96995 * 120.00635 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 1.5626 2.6215 -7.4418 16 6 2.8702 4.1678 -8.1765 17 7 3.5254 1.8925 -7.5641 18 6 3.2651 1.0147 -8.5823 19 1 2.3627 1.1178 -9.1667 20 6 4.1611 -0.0076 -8.8634 21 7 5.2611 -0.1329 -8.1516 22 14 3.8057 -1.2054 -10.2520 23 1 3.6975 -0.4610 -11.5325 24 1 4.9091 -2.1947 -10.3468 25 1 2.5283 -1.9124 -9.9810 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9953 4.1458 1.3744 32 1 2.7792 3.5312 -3.2764 33 1 2.9597 1.3748 -5.0914 34 1 1.2817 1.9687 -5.0909 35 1 2.0913 4.2549 -5.6080 36 1 3.7691 3.6606 -5.6083 37 1 2.7633 3.8667 -9.2186 38 1 2.1668 4.9708 -7.9561 39 1 3.8876 4.5181 -8.0025 40 1 4.3357 1.7999 -7.0391 41 1 5.8870 -0.8474 -8.3477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713421298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:46 Heat of formation + Delta-G solvation = -10.943556 kcal Electronic energy + Delta-G solvation = -21582.270589 eV Core-core repulsion = 18303.733061 eV Total energy + Delta-G solvation = -3278.537528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.23758 -40.41296 -38.15137 -36.11513 -35.07305 -34.14584 -33.06197 -31.20780 -30.26877 -29.26189 -25.97799 -25.30408 -24.17667 -23.45019 -22.12760 -21.52853 -20.60664 -19.72529 -19.20317 -17.21982 -17.04326 -16.92764 -16.66945 -16.00660 -15.72638 -15.45116 -15.32471 -15.12015 -14.82744 -14.42063 -14.36049 -14.12960 -13.58546 -13.32322 -13.25357 -12.79474 -12.63913 -12.42883 -12.34221 -12.26566 -12.15335 -12.00072 -11.67020 -11.60767 -11.46187 -11.03060 -10.95848 -10.86538 -10.26186 -9.53108 -8.97943 -7.92583 -5.19314 0.24674 1.46324 1.49178 1.54575 1.85112 1.87610 2.15390 2.23786 2.57444 3.41828 3.50351 3.76134 3.89808 3.96381 4.06468 4.21290 4.21436 4.35035 4.47813 4.54005 4.64774 4.66989 4.74263 4.75386 4.88381 5.00531 5.05874 5.08515 5.17528 5.23441 5.27708 5.36896 5.39183 5.51448 5.54049 5.61224 6.30312 6.34151 6.45570 6.92639 7.10359 7.36595 8.14458 8.35397 9.30726 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.003588 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.930220 B = 7802.346000 C = 8604.141899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.053 4.053 3 C 0.084 3.916 4 N -0.534 5.534 5 C 0.243 3.757 6 N -0.539 5.539 7 H 0.441 0.559 8 C -0.106 4.106 9 C 0.584 3.416 10 O -0.563 6.563 11 N -0.710 5.710 12 C 0.134 3.866 13 C -0.115 4.115 14 C 0.164 3.836 15 H 0.043 0.957 16 C -0.153 4.153 17 N -0.735 5.735 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.282 1.282 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.267 0.733 32 H 0.411 0.589 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.372 0.628 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 14.169 17.574 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.051 4.051 4 N -0.254 5.254 5 C -0.041 4.041 6 N -0.145 5.145 7 H 0.283 0.717 8 C -0.222 4.222 9 C 0.372 3.628 10 O -0.442 6.442 11 N -0.362 5.362 12 C 0.011 3.989 13 C -0.153 4.153 14 C 0.055 3.945 15 H 0.061 0.939 16 C -0.213 4.213 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.621 5.621 22 Si 0.795 3.205 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.208 1.208 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.283 0.717 32 H 0.247 0.753 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.203 0.797 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.013 13.038 17.974 23.286 hybrid contribution 0.847 -0.081 -1.806 1.997 sum -6.166 12.957 16.167 21.617 Atomic orbital electron populations 1.21528 0.93663 1.02383 1.01032 1.20033 0.96924 0.89268 1.02928 1.21163 0.99117 0.97283 0.87513 1.70124 1.20399 1.04365 1.30482 1.26152 0.98049 0.97640 0.82295 1.43217 1.49876 1.12321 1.09102 0.71669 1.20620 1.17818 0.90063 0.93733 1.17192 0.77374 0.84576 0.83675 1.90839 1.48108 1.21635 1.83589 1.45722 1.67651 1.16916 1.05876 1.21154 1.00572 0.98249 0.78972 1.21917 1.02872 0.97179 0.93379 1.20457 0.92996 0.88280 0.92751 0.93922 1.22261 1.01203 0.98320 0.99518 1.42640 1.24186 1.32149 1.38629 1.19566 1.03591 1.05618 1.07986 0.90832 1.25463 0.97375 1.01565 1.02379 1.69789 1.12937 1.35301 1.44044 0.85326 0.76587 0.78854 0.79726 1.20291 1.22433 1.20806 0.94342 0.91085 0.92192 0.91066 0.89907 0.71732 0.75304 0.94279 0.92673 0.87527 0.90883 0.94942 0.90527 0.93611 0.79654 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.89 71.98 0.71 -2.39 16 2 C -0.05 -1.43 5.93 29.85 0.18 -1.26 16 3 C 0.08 2.22 6.40 41.97 0.27 2.49 16 4 N -0.53 -11.99 11.20 -187.58 -2.10 -14.09 16 5 C 0.24 3.06 13.01 180.33 2.35 5.41 16 6 N -0.54 -7.05 6.07 -188.04 -1.14 -8.19 16 7 H 0.44 2.11 8.32 -92.71 -0.77 1.34 16 8 C -0.11 -2.57 7.08 40.01 0.28 -2.29 16 9 C 0.58 17.70 7.79 86.47 0.67 18.37 16 10 O -0.56 -22.36 14.82 -4.29 -0.06 -22.42 16 11 N -0.71 -17.54 5.55 -467.01 -2.59 -20.13 16 12 C 0.13 4.27 5.56 86.38 0.48 4.75 16 13 C -0.12 -3.06 4.87 30.59 0.15 -2.92 16 14 C 0.16 5.88 2.89 44.99 0.13 6.01 16 15 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 16 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 17 N -0.74 -35.83 4.57 -322.94 -1.48 -37.30 16 18 C -0.24 -13.03 9.93 84.03 0.83 -12.20 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 22 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.26 6.48 -2.39 -0.02 2.25 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.27 0.22 8.06 -2.91 -0.02 0.19 16 32 H 0.41 6.32 7.72 -92.71 -0.72 5.60 16 33 H 0.04 1.65 7.75 -2.38 -0.02 1.63 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.37 19.60 7.80 -92.71 -0.72 18.88 16 41 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.33 346.25 0.98 -78.35 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -1.15 Total: 26.61 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.20 Total: 7.91 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -7.03 Total: -139.55 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.33 0.98 -78.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713421298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.406 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds