Wall clock time and date at job start Tue Mar 31 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47069 * 2 1 4 4 N 1.46505 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00023 * 275.31038 * 4 3 2 6 6 H 1.08002 * 120.00252 * 37.58355 * 5 4 3 7 7 C 1.38812 * 120.00020 * 217.57749 * 5 4 3 8 8 N 1.31624 * 119.99955 * 21.43128 * 7 5 4 9 9 Si 1.86800 * 120.00424 * 201.42817 * 7 5 4 10 10 H 1.48500 * 109.47137 * 89.99960 * 9 7 5 11 11 H 1.48493 * 109.47308 * 210.00270 * 9 7 5 12 12 H 1.48505 * 109.46766 * 330.00395 * 9 7 5 13 13 C 1.46495 * 119.99636 * 95.31314 * 4 3 2 14 14 C 1.53000 * 109.47031 * 269.99870 * 13 4 3 15 15 N 1.46504 * 109.46991 * 180.02562 * 14 13 4 16 16 C 1.34780 * 119.99662 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00225 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99781 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.46873 * 179.97438 * 18 16 15 20 20 C 1.39864 * 125.89779 * 125.00314 * 19 18 16 21 21 C 1.35318 * 107.92305 * 179.75434 * 20 19 18 22 22 N 1.34949 * 107.74139 * 0.42202 * 21 20 19 23 23 H 0.97003 * 126.03943 * 179.83884 * 22 21 20 24 24 N 1.30833 * 125.89802 * 305.01614 * 19 18 16 25 25 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46949 * 299.99683 * 1 2 3 27 27 H 1.08997 * 109.47518 * 59.99957 * 1 2 3 28 28 H 1.08997 * 109.47332 * 240.00159 * 2 1 3 29 29 H 1.09004 * 109.47017 * 120.00425 * 2 1 3 30 30 H 1.09003 * 109.46976 * 60.00333 * 3 2 1 31 31 H 1.08997 * 109.46985 * 300.00369 * 3 2 1 32 32 H 0.96997 * 119.99961 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47180 * 149.99670 * 13 4 3 34 34 H 1.09003 * 109.47452 * 29.99315 * 13 4 3 35 35 H 1.09001 * 109.47406 * 60.00290 * 14 13 4 36 36 H 1.09003 * 109.47280 * 300.00143 * 14 13 4 37 37 H 0.96997 * 120.00557 * 359.97438 * 15 14 13 38 38 H 1.09001 * 109.46854 * 59.99666 * 18 16 15 39 39 H 1.09003 * 109.47061 * 299.99990 * 18 16 15 40 40 H 1.08006 * 126.04445 * 0.02562 * 20 19 18 41 41 H 1.07993 * 126.13152 * 180.26593 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9635 7 6 5.3612 2.0514 1.3741 8 7 5.6020 3.1240 0.6503 9 14 6.5969 1.4960 2.6602 10 1 7.5670 0.5571 2.0417 11 1 7.3219 2.6774 3.1928 12 1 5.8837 0.8117 3.7687 13 6 4.2380 1.5598 -1.2624 14 6 4.4932 0.1643 -1.8354 15 7 5.2267 0.2816 -3.0981 16 6 5.5635 -0.8267 -3.7872 17 8 5.2598 -1.9211 -3.3617 18 6 6.3175 -0.7061 -5.0865 19 6 6.5690 -2.0806 -5.6507 20 6 6.2089 -2.5211 -6.9284 21 6 6.6117 -3.8068 -7.0546 22 7 7.1973 -4.1700 -5.8943 23 1 7.5793 -5.0392 -5.6954 24 7 7.1617 -3.0681 -5.0300 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 6.4211 3.6258 0.7845 33 1 5.1902 2.0594 -1.0848 34 1 3.6491 2.1416 -1.9716 35 1 3.5408 -0.3353 -2.0131 36 1 5.0820 -0.4176 -1.1263 37 1 5.4693 1.1568 -3.4387 38 1 7.2700 -0.2068 -4.9087 39 1 5.7289 -0.1239 -5.7955 40 1 5.7029 -1.9369 -7.6829 41 1 6.4848 -4.4311 -7.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713544483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:19 Heat of formation + Delta-G solvation = 21.575549 kcal Electronic energy + Delta-G solvation = -21624.824444 eV Core-core repulsion = 18347.697050 eV Total energy + Delta-G solvation = -3277.127394 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06511 -40.43075 -38.22603 -35.66886 -34.60278 -33.91651 -32.60090 -30.80386 -30.49962 -28.72886 -27.34102 -25.12494 -22.90016 -22.42288 -21.95727 -21.61748 -20.46991 -18.96947 -18.72933 -17.80402 -17.01977 -16.81417 -16.48763 -15.92578 -15.72278 -15.40936 -15.01479 -14.66033 -14.46697 -14.35113 -14.33346 -14.15959 -13.57572 -13.34668 -13.09588 -12.92734 -12.89358 -12.62768 -12.52676 -12.20565 -12.02392 -11.87331 -11.65394 -11.52293 -11.32747 -10.89478 -10.53497 -10.33348 -9.95821 -9.58022 -8.59060 -7.85962 -5.48957 1.06529 1.42241 1.46939 1.53069 1.74664 1.79781 2.10392 2.39859 2.53636 3.21495 3.66218 3.75251 3.99777 4.14435 4.23338 4.35278 4.39709 4.40717 4.56794 4.58079 4.68570 4.74939 4.81704 4.86964 4.90880 4.99252 5.14471 5.17775 5.24482 5.27245 5.43269 5.49005 5.62608 5.66434 5.73373 5.76528 6.45001 6.55343 6.70243 6.82035 7.14999 7.38849 7.83144 8.34804 9.09459 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.004083 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.335418 B = 6856.716204 C = 7886.783264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.272 4.272 6 H 0.049 0.951 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.292 1.292 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.146 3.854 14 C 0.122 3.878 15 N -0.714 5.714 16 C 0.505 3.495 17 O -0.585 6.585 18 C -0.053 4.053 19 C 0.067 3.933 20 C -0.284 4.284 21 C 0.066 3.934 22 N -0.480 5.480 23 H 0.448 0.552 24 N -0.326 5.326 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.020 0.980 37 H 0.414 0.586 38 H 0.127 0.873 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -7.431 -18.171 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.219 1.219 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.019 3.981 14 C -0.004 4.004 15 N -0.367 5.367 16 C 0.292 3.708 17 O -0.464 6.464 18 C -0.094 4.094 19 C -0.100 4.100 20 C -0.313 4.313 21 C -0.081 4.081 22 N -0.189 5.189 23 H 0.293 0.707 24 N -0.150 5.150 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.251 0.749 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.191 0.809 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.009 -8.415 -16.757 18.751 hybrid contribution 0.745 -0.236 0.344 0.854 sum 0.736 -8.651 -16.413 18.568 Atomic orbital electron populations 1.21650 0.94129 1.01737 1.02093 1.22021 0.96522 0.98904 1.00061 1.21044 0.83319 0.94394 0.99161 1.43847 1.00901 1.85068 1.02022 1.19151 1.06412 1.19913 0.94763 0.93312 1.25703 1.01947 0.94700 0.99966 1.70072 1.25867 1.15426 1.43767 0.85581 0.79676 0.77329 0.79755 1.21912 1.21208 1.19724 1.20932 0.99225 0.91823 0.86143 1.21846 0.94073 1.00766 0.83764 1.45924 1.57819 1.09613 1.23303 1.21184 0.79219 0.83688 0.86727 1.90696 1.56163 1.28472 1.71107 1.20177 1.03003 0.92662 0.93601 1.22024 0.98373 0.95251 0.94364 1.21806 1.13824 0.97269 0.98411 1.23317 0.95988 0.97090 0.91733 1.46468 1.48207 1.13342 1.10911 0.70712 1.77361 1.25045 0.95496 1.17144 0.92393 0.92520 0.91923 0.93822 0.94562 0.94618 0.93002 0.93628 0.90812 0.93377 0.93767 0.96107 0.74901 0.85498 0.82925 0.80870 0.76154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.21 16 2 C -0.14 -5.04 6.23 30.59 0.19 -4.85 16 3 C 0.15 6.11 5.72 86.38 0.49 6.61 16 4 N -0.60 -29.60 2.43 -702.01 -1.71 -31.31 16 5 C -0.27 -15.06 9.45 84.03 0.79 -14.27 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.02 -1.37 4.95 84.86 0.42 -0.95 16 8 N -0.91 -51.27 11.47 21.65 0.25 -51.03 16 9 Si 0.95 45.28 29.60 68.60 2.03 47.31 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.15 6.56 5.45 86.38 0.47 7.03 16 14 C 0.12 5.19 6.00 86.38 0.52 5.70 16 15 N -0.71 -23.84 5.56 -463.03 -2.57 -26.41 16 16 C 0.51 17.32 7.82 87.66 0.69 18.01 16 17 O -0.58 -26.35 15.56 -3.04 -0.05 -26.40 16 18 C -0.05 -1.23 6.28 29.10 0.18 -1.05 16 19 C 0.07 1.81 6.02 43.10 0.26 2.07 16 20 C -0.28 -5.56 10.72 21.99 0.24 -5.32 16 21 C 0.07 1.05 11.99 83.54 1.00 2.05 16 22 N -0.48 -10.34 7.36 -57.59 -0.42 -10.77 16 23 H 0.45 6.75 8.96 -213.32 -1.91 4.83 16 24 N -0.33 -10.38 12.05 -47.39 -0.57 -10.95 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.69 6.64 -2.39 -0.02 1.67 16 29 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 32 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.07 3.74 5.52 -2.39 -0.01 3.73 16 34 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 35 H 0.04 1.92 6.64 -2.39 -0.02 1.91 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.41 10.84 8.47 -92.71 -0.79 10.06 16 38 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.15 2.16 8.12 -2.39 -0.02 2.14 16 40 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.22 1.13 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -78.74 345.22 1.27 -77.47 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -1.66 Total: 20.24 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.97 Total: 11.82 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -5.03 Total: -130.45 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -78.74 1.27 -77.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713544483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.049 kcal (2) G-P(sol) polarization free energy of solvation -78.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds