Wall clock time and date at job start Tue Mar 31 2020 01:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47600 * 2 1 4 4 N 1.30447 * 125.98387 * 270.34582 * 3 2 1 5 5 N 1.39943 * 108.89112 * 180.11103 * 4 3 2 6 6 C 1.46496 * 125.75228 * 179.85089 * 5 4 3 7 7 C 1.34257 * 108.49346 * 359.58481 * 5 4 3 8 8 C 1.38046 * 107.41604 * 0.24112 * 7 5 4 9 9 C 1.47426 * 126.41548 * 180.02562 * 8 7 5 10 10 O 1.21605 * 120.00324 * 142.68900 * 9 8 7 11 11 N 1.34777 * 120.00101 * 322.69056 * 9 8 7 12 12 C 1.46496 * 119.99919 * 4.54725 * 11 9 8 13 13 C 1.46506 * 120.00152 * 184.54484 * 11 9 8 14 14 C 1.52998 * 109.46812 * 90.00146 * 13 11 9 15 15 N 1.46495 * 109.47333 * 180.02562 * 14 13 11 16 16 C 1.36937 * 120.00366 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00055 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00043 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00152 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00137 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47566 * 89.99881 * 20 18 16 22 22 H 1.48504 * 109.47449 * 210.00298 * 20 18 16 23 23 H 1.48502 * 109.47020 * 329.99636 * 20 18 16 24 24 H 1.08998 * 109.47368 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46559 * 300.00327 * 1 2 3 26 26 H 1.08999 * 109.46753 * 59.99798 * 1 2 3 27 27 H 1.09006 * 109.47063 * 239.99720 * 2 1 3 28 28 H 1.09000 * 109.47443 * 120.00495 * 2 1 3 29 29 H 1.08998 * 109.46976 * 269.68894 * 6 5 4 30 30 H 1.08999 * 109.47099 * 29.69049 * 6 5 4 31 31 H 1.09005 * 109.47055 * 149.69074 * 6 5 4 32 32 H 1.07998 * 126.29389 * 180.22093 * 7 5 4 33 33 H 1.08999 * 109.47491 * 84.80623 * 12 11 9 34 34 H 1.09000 * 109.47509 * 204.80854 * 12 11 9 35 35 H 1.09000 * 109.47619 * 324.80764 * 12 11 9 36 36 H 1.08999 * 109.47198 * 210.00071 * 13 11 9 37 37 H 1.08993 * 109.46964 * 330.00427 * 13 11 9 38 38 H 1.09002 * 109.47678 * 300.00019 * 14 13 11 39 39 H 1.09005 * 109.47355 * 60.00148 * 14 13 11 40 40 H 0.97005 * 119.99655 * 359.97438 * 15 14 13 41 41 H 0.96995 * 119.99826 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2820 2.1455 -1.0555 5 7 2.7327 3.4049 -0.6442 6 6 3.1207 4.5062 -1.5290 7 6 2.7441 3.4358 0.6979 8 6 2.3092 2.2036 1.1432 9 6 2.1608 1.7833 2.5485 10 8 1.2320 1.0695 2.8748 11 7 3.0546 2.1902 3.4716 12 6 4.1154 3.1296 3.0997 13 6 2.9651 1.6932 4.8468 14 6 3.7932 0.4137 4.9815 15 7 3.7033 -0.0837 6.3564 16 6 4.3682 -1.2255 6.7164 17 1 4.9585 -1.7595 5.9865 18 6 4.2826 -1.6970 8.0192 19 7 4.9221 -2.7941 8.3653 20 14 3.2599 -0.7746 9.2811 21 1 1.8685 -1.2934 9.2657 22 1 3.8459 -0.9697 10.6316 23 1 3.2521 0.6729 8.9495 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.1861 4.4376 -1.7488 30 1 2.5533 4.4433 -2.4576 31 1 2.9113 5.4571 -1.0389 32 1 3.0395 4.2709 1.3157 33 1 3.7367 4.1496 3.1644 34 1 4.9597 3.0117 3.7791 35 1 4.4394 2.9264 2.0790 36 1 3.3498 2.4487 5.5319 37 1 1.9241 1.4794 5.0889 38 1 3.4086 -0.3419 4.2964 39 1 4.8343 0.6274 4.7394 40 1 3.1734 0.3961 7.0121 41 1 4.8619 -3.1238 9.2755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713603127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:30 Heat of formation + Delta-G solvation = 33.819361 kcal Electronic energy + Delta-G solvation = -21953.553875 eV Core-core repulsion = 18676.957412 eV Total energy + Delta-G solvation = -3276.596462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51587 -40.38797 -37.45117 -36.19845 -35.59349 -33.73795 -32.71672 -31.75317 -29.87418 -28.02998 -27.38136 -25.69346 -24.49717 -23.43264 -22.61630 -21.26952 -20.09849 -19.62022 -18.19807 -17.44608 -16.98460 -16.80520 -16.26934 -16.20897 -15.72141 -15.40533 -15.29593 -15.06865 -14.81076 -14.51465 -14.22806 -13.85917 -13.65088 -13.49254 -13.43803 -13.13165 -12.96776 -12.88559 -12.73298 -12.44154 -12.34478 -12.14173 -12.07886 -11.82512 -11.66953 -11.01616 -10.92045 -10.34909 -9.74006 -9.53379 -9.36169 -8.04775 -5.40647 0.60954 1.11200 1.38029 1.44124 1.46502 1.50521 1.94055 2.32643 2.48298 3.26289 3.33724 3.67427 3.72554 3.90557 4.00436 4.19227 4.20809 4.28539 4.34551 4.40110 4.46376 4.49307 4.55853 4.61021 4.69139 4.71642 4.74860 4.92785 4.99354 5.03121 5.09102 5.10841 5.30819 5.43401 5.55220 5.72058 5.94062 6.18174 6.42602 6.58971 7.03899 7.25065 7.77132 7.99218 9.16703 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.003725 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.163172 B = 7515.107619 C = 8038.574660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C 0.115 3.885 4 N -0.324 5.324 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.120 3.880 8 C -0.313 4.313 9 C 0.586 3.414 10 O -0.578 6.578 11 N -0.608 5.608 12 C 0.066 3.934 13 C 0.120 3.880 14 C 0.149 3.851 15 N -0.754 5.754 16 C -0.242 4.242 17 H 0.050 0.950 18 C -0.063 4.063 19 N -0.984 5.984 20 Si 0.960 3.040 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.243 1.243 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.001 0.999 39 H 0.032 0.968 40 H 0.369 0.631 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 22.868 -20.555 30.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.052 4.052 4 N -0.146 5.146 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.032 4.032 8 C -0.328 4.328 9 C 0.376 3.624 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.075 4.075 13 C -0.004 4.004 14 C 0.022 3.978 15 N -0.400 5.400 16 C -0.373 4.373 17 H 0.069 0.931 18 C -0.254 4.254 19 N -0.634 5.634 20 Si 0.786 3.214 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.167 1.167 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.019 0.981 39 H 0.050 0.950 40 H 0.203 0.797 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.077 22.535 -21.854 31.655 hybrid contribution -0.293 -0.436 1.832 1.906 sum -4.370 22.099 -20.022 30.139 Atomic orbital electron populations 1.21563 0.93318 1.02603 1.01498 1.19968 0.97211 0.88416 1.02844 1.22467 0.96081 0.97241 0.89403 1.77094 1.22834 0.92113 1.22578 1.48726 1.47964 1.11400 1.05526 1.22436 1.02821 0.85468 0.94526 1.23755 0.95541 0.98665 0.85244 1.20137 1.21769 0.97862 0.92990 1.17746 0.81100 0.78962 0.84630 1.90755 1.33698 1.39762 1.81549 1.47661 1.30593 1.46508 1.09231 1.22320 0.89935 0.92695 1.02552 1.21424 1.00709 0.95417 0.82857 1.20964 0.97674 0.94209 0.84958 1.42494 1.60081 1.29102 1.08361 1.18980 1.22519 1.00524 0.95271 0.93147 1.25589 1.01815 0.98529 0.99506 1.69896 1.48790 1.25346 1.19322 0.85336 0.78128 0.79893 0.78008 1.20737 1.21696 1.16678 0.90923 0.93680 0.92217 0.89319 0.91733 0.88551 0.88871 0.85658 0.75467 0.88946 0.89943 0.90233 0.87473 0.91264 0.98137 0.95022 0.79721 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.90 71.98 0.71 -2.63 16 2 C -0.05 -1.22 5.96 29.85 0.18 -1.04 16 3 C 0.11 3.11 6.51 43.52 0.28 3.40 16 4 N -0.32 -7.84 12.50 -46.67 -0.58 -8.43 16 5 N -0.36 -5.62 3.98 -367.79 -1.46 -7.08 16 6 C 0.09 0.39 11.44 127.77 1.46 1.86 16 7 C 0.12 1.83 9.21 84.28 0.78 2.61 16 8 C -0.31 -7.91 5.38 -20.15 -0.11 -8.02 16 9 C 0.59 18.24 7.38 86.66 0.64 18.88 16 10 O -0.58 -23.16 15.41 -4.05 -0.06 -23.22 16 11 N -0.61 -15.91 2.87 -850.68 -2.44 -18.35 16 12 C 0.07 0.98 9.03 127.77 1.15 2.13 16 13 C 0.12 3.75 5.53 86.38 0.48 4.23 16 14 C 0.15 6.19 6.58 86.38 0.57 6.76 16 15 N -0.75 -37.21 5.41 -343.46 -1.86 -39.07 16 16 C -0.24 -14.56 10.47 84.03 0.88 -13.68 16 17 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 18 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 19 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 20 Si 0.96 46.19 27.74 68.60 1.90 48.09 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.24 -10.21 6.52 99.48 0.65 -9.57 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.35 7.66 -2.39 -0.02 1.33 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 2.03 7.70 -2.39 -0.02 2.01 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.13 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.23 1.19 6.26 -2.91 -0.02 1.17 16 33 H 0.09 0.67 7.32 -2.39 -0.02 0.65 16 34 H 0.08 1.19 8.03 -2.39 -0.02 1.18 16 35 H 0.08 1.05 5.89 -2.39 -0.01 1.04 16 36 H 0.11 2.71 8.07 -2.39 -0.02 2.69 16 37 H 0.07 2.44 7.36 -2.39 -0.02 2.42 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.37 16.90 5.53 -92.70 -0.51 16.39 16 41 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -86.36 340.82 3.74 -82.62 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.46 Total: 18.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 7.49 Total: 11.14 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -6.05 Total: -137.35 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Total: -86.36 3.74 -82.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713603127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.437 kcal (2) G-P(sol) polarization free energy of solvation -86.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds