Wall clock time and date at job start Tue Mar 31 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46503 * 120.00281 * 2 1 4 4 C 1.52997 * 109.47194 * 270.00197 * 3 2 1 5 5 N 1.46497 * 109.47173 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99936 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99790 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99760 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47216 * 90.00197 * 10 8 6 12 12 H 1.48500 * 109.47143 * 210.00117 * 10 8 6 13 13 H 1.48502 * 109.47043 * 329.99940 * 10 8 6 14 14 C 1.34780 * 120.00403 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00571 * 174.73616 * 14 2 1 16 16 C 1.50700 * 119.99632 * 354.73370 * 14 2 1 17 17 C 1.53000 * 109.47488 * 305.71620 * 16 14 2 18 18 C 1.53001 * 109.47072 * 185.71958 * 16 14 2 19 19 C 1.50704 * 109.47163 * 65.72049 * 16 14 2 20 20 C 1.34670 * 126.58858 * 9.51629 * 19 16 14 21 21 N 1.34126 * 108.01974 * 179.97438 * 20 19 16 22 22 C 1.30508 * 109.25611 * 359.97438 * 21 20 19 23 23 N 1.35041 * 108.69734 * 0.26560 * 22 21 20 24 24 H 0.97000 * 126.39530 * 179.73405 * 23 22 21 25 25 H 1.09004 * 109.47357 * 273.47012 * 1 2 3 26 26 H 1.08997 * 109.47695 * 33.47238 * 1 2 3 27 27 H 1.09006 * 109.47161 * 153.47519 * 1 2 3 28 28 H 1.09007 * 109.46600 * 29.99833 * 3 2 1 29 29 H 1.08991 * 109.47347 * 149.99634 * 3 2 1 30 30 H 1.09003 * 109.46986 * 299.99855 * 4 3 2 31 31 H 1.08999 * 109.47135 * 59.99426 * 4 3 2 32 32 H 0.97002 * 119.99912 * 359.97438 * 5 4 3 33 33 H 0.97002 * 120.00317 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47580 * 190.05916 * 17 16 14 35 35 H 1.09000 * 109.47397 * 310.07089 * 17 16 14 36 36 H 1.09007 * 109.46669 * 70.06533 * 17 16 14 37 37 H 1.09002 * 109.46888 * 299.99613 * 18 16 14 38 38 H 1.09001 * 109.47436 * 60.00052 * 18 16 14 39 39 H 1.09003 * 109.46875 * 180.02562 * 18 16 14 40 40 H 1.07996 * 125.98983 * 359.95516 * 20 19 16 41 41 H 1.08000 * 125.64872 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5272 3.5721 -2.6284 7 1 3.2582 3.1039 -3.5637 8 6 4.2203 4.7748 -2.6283 9 7 4.5477 5.3457 -1.4885 10 14 4.6872 5.5838 -4.2461 11 1 3.5979 6.4973 -4.6752 12 1 5.9416 6.3584 -4.0683 13 1 4.8933 4.5387 -5.2808 14 6 2.1389 -1.1672 -0.0005 15 8 3.3478 -1.1694 -0.0969 16 6 1.3902 -2.4696 0.1187 17 6 0.5021 -2.4353 1.3641 18 6 2.3886 -3.6230 0.2360 19 6 0.5327 -2.6699 -1.1044 20 6 0.5585 -1.9341 -2.2320 21 7 -0.3551 -2.4362 -3.0760 22 6 -0.9456 -3.4556 -2.5143 23 7 -0.4249 -3.6319 -1.2809 24 1 -0.6803 -4.3141 -0.6404 25 1 -0.3634 0.0622 1.0258 26 1 -0.3634 0.8572 -0.5668 27 1 -0.3634 -0.9195 -0.4590 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1384 0.5138 30 1 3.0415 0.9507 -1.9563 31 1 1.5001 1.8407 -1.9563 32 1 3.4264 3.3997 -0.6024 33 1 5.0324 6.1859 -1.4885 34 1 0.0999 -3.4309 1.5512 35 1 1.0923 -2.1145 2.2225 36 1 -0.3188 -1.7358 1.2058 37 1 3.0213 -3.6475 -0.6513 38 1 3.0088 -3.4781 1.1206 39 1 1.8470 -4.5650 0.3218 40 1 1.2017 -1.0879 -2.4231 41 1 -1.7251 -4.0555 -2.9602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713654696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:10 Heat of formation + Delta-G solvation = 48.212099 kcal Electronic energy + Delta-G solvation = -22662.480758 eV Core-core repulsion = 19386.508412 eV Total energy + Delta-G solvation = -3275.972347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58727 -40.05711 -36.03764 -35.58573 -34.17021 -32.54508 -31.25818 -29.16626 -28.47734 -27.28258 -26.59296 -24.33367 -23.00242 -21.81711 -21.37247 -20.84261 -19.30271 -18.20931 -17.10833 -16.42332 -16.02817 -15.42024 -15.19082 -14.63652 -14.51542 -14.35092 -13.97354 -13.53433 -13.47232 -13.22478 -13.04121 -12.76476 -12.74165 -12.59136 -12.42012 -12.02863 -11.78475 -11.36146 -11.18096 -10.94166 -10.82864 -10.62310 -10.20751 -10.14533 -10.04896 -9.74133 -9.59409 -8.80503 -8.55367 -8.43565 -6.86391 -5.69815 -2.98550 1.76226 2.47198 2.94955 2.99501 3.10234 3.49964 3.54895 3.57473 4.20579 4.27815 4.59071 4.61062 4.67684 4.77981 5.11851 5.15449 5.22051 5.33363 5.37185 5.42469 5.44873 5.54551 5.58048 5.69011 5.70844 5.80323 5.89907 5.93314 6.03037 6.09122 6.17457 6.52360 6.61176 6.80862 6.97371 7.10492 7.49854 7.78020 7.86649 8.24887 8.48886 9.59901 10.16076 10.51207 11.53257 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.004103 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.750444 B = 6823.152213 C = 7365.233658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.108 3.892 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.236 4.236 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.527 3.473 15 O -0.521 6.521 16 C -0.004 4.004 17 C -0.156 4.156 18 C -0.126 4.126 19 C -0.015 4.015 20 C -0.006 4.006 21 N -0.486 5.486 22 C 0.184 3.816 23 N -0.563 5.563 24 H 0.418 0.582 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.170 0.830 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -21.540 7.359 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.335 5.335 3 C -0.015 4.015 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.367 4.367 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.312 3.688 15 O -0.396 6.396 16 C -0.009 4.009 17 C -0.213 4.213 18 C -0.184 4.184 19 C -0.131 4.131 20 C -0.154 4.154 21 N -0.205 5.205 22 C -0.100 4.100 23 N -0.167 5.167 24 H 0.255 0.745 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.187 0.813 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.950 -21.150 6.302 26.108 hybrid contribution 0.233 0.023 0.435 0.495 sum -13.717 -21.127 6.737 26.075 Atomic orbital electron populations 1.22283 0.79910 1.04336 1.01404 1.47708 1.06840 1.06092 1.72889 1.21743 0.97269 0.83113 0.99333 1.20915 0.95199 0.89427 0.93111 1.42202 1.67134 1.21594 1.06556 1.19227 1.29208 1.02244 0.86009 0.91151 1.24729 1.01333 0.98049 0.96879 1.69658 1.45254 1.19528 1.23939 0.86170 0.77626 0.79260 0.83065 1.21728 1.21769 1.20706 1.19974 0.87625 0.84507 0.76696 1.90757 1.13800 1.86778 1.48278 1.19232 0.94511 0.95287 0.91851 1.22214 1.00086 1.02948 0.96078 1.21694 0.97977 0.94624 1.04063 1.20646 0.97588 0.95702 0.99146 1.22319 1.00670 1.02304 0.90114 1.70367 1.09560 1.09385 1.31171 1.25047 1.02312 0.99279 0.83342 1.43137 1.30353 1.26903 1.16326 0.74453 0.92742 0.90723 0.89877 0.90407 0.89765 0.95775 0.96304 0.78316 0.93555 0.91933 0.91042 0.90401 0.91118 0.91088 0.92550 0.81263 0.77449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 8.09 59.84 0.48 1.18 16 2 N -0.60 -8.57 2.63 -181.58 -0.48 -9.05 16 3 C 0.11 1.88 5.50 -4.04 -0.02 1.85 16 4 C 0.14 3.09 6.58 -4.05 -0.03 3.06 16 5 N -0.73 -19.49 5.60 -59.91 -0.34 -19.83 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 10 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 14 C 0.53 7.82 5.40 -10.98 -0.06 7.76 16 15 O -0.52 -9.97 15.62 5.56 0.09 -9.88 16 16 C 0.00 -0.04 0.73 -156.81 -0.11 -0.16 16 17 C -0.16 -1.15 8.00 37.16 0.30 -0.86 16 18 C -0.13 -1.26 7.75 37.16 0.29 -0.97 16 19 C -0.02 -0.16 3.88 -81.60 -0.32 -0.48 16 20 C -0.01 -0.08 9.20 -17.81 -0.16 -0.24 16 21 N -0.49 -6.41 11.25 -14.67 -0.17 -6.58 16 22 C 0.18 1.55 13.04 -90.37 -1.18 0.37 16 23 N -0.56 -3.97 6.11 -10.30 -0.06 -4.04 16 24 H 0.42 1.46 8.96 -40.82 -0.37 1.09 16 25 H 0.05 0.47 7.17 -51.93 -0.37 0.10 16 26 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 27 H 0.08 0.85 3.36 -51.93 -0.17 0.68 16 28 H 0.08 1.24 8.07 -51.92 -0.42 0.82 16 29 H 0.08 1.61 7.50 -51.93 -0.39 1.22 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 35 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 36 H 0.08 0.55 4.64 -51.93 -0.24 0.31 16 37 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.17 2.72 7.38 -52.49 -0.39 2.33 16 41 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -36.43 332.67 -7.30 -43.73 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.00 Total: 6.84 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.06 Total: 3.92 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.32 Total: -67.83 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.43 -7.30 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713654696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.943 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds