Wall clock time and date at job start Tue Mar 31 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47195 * 2 1 4 4 C 1.35368 * 126.38852 * 275.30085 * 3 2 1 5 5 C 1.41500 * 105.50384 * 180.14122 * 4 3 2 6 6 C 1.47714 * 126.51515 * 179.83930 * 5 4 3 7 7 O 1.21565 * 120.00088 * 359.71878 * 6 5 4 8 8 N 1.34776 * 119.99610 * 179.71485 * 6 5 4 9 9 C 1.46500 * 119.99923 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47226 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47434 * 64.99688 * 10 9 8 12 12 C 1.52997 * 109.47114 * 184.99495 * 10 9 8 13 13 C 1.53007 * 109.47262 * 184.99769 * 12 10 9 14 14 N 1.46498 * 109.46963 * 304.99288 * 10 9 8 15 15 C 1.36943 * 119.99752 * 154.72381 * 14 10 9 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 10 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 10 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 N 1.31807 * 106.96299 * 359.58400 * 5 4 3 24 24 N 1.28465 * 110.07368 * 0.25945 * 23 5 4 25 25 H 0.96995 * 124.88396 * 179.97438 * 24 23 5 26 26 H 1.09006 * 109.46553 * 299.99904 * 1 2 3 27 27 H 1.08997 * 109.46926 * 59.99284 * 1 2 3 28 28 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47076 * 240.00146 * 2 1 3 30 30 H 1.09001 * 109.47388 * 120.00555 * 2 1 3 31 31 H 1.08003 * 127.24678 * 359.97438 * 4 3 2 32 32 H 0.96998 * 119.99957 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.47176 * 59.99567 * 9 8 6 34 34 H 1.09008 * 109.46559 * 299.99697 * 9 8 6 35 35 H 1.09000 * 109.47396 * 304.99878 * 12 10 9 36 36 H 1.09005 * 109.47103 * 64.99798 * 12 10 9 37 37 H 1.09000 * 109.46616 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47004 * 300.00349 * 13 12 10 39 39 H 1.08997 * 109.46461 * 60.00164 * 13 12 10 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 10 9 41 41 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6929 3.4413 -0.5831 6 6 3.0428 4.6375 -1.3760 7 8 2.9246 4.6208 -2.5858 8 7 3.4929 5.7474 -0.7581 9 6 3.8393 6.9340 -1.5443 10 6 4.3199 8.0441 -0.6075 11 1 5.2479 7.7365 -0.1255 12 6 4.5630 9.3218 -1.4133 13 6 5.1611 10.3944 -0.5006 14 7 3.3000 8.2972 0.4132 15 6 3.6592 8.8288 1.6231 16 1 4.6938 9.0656 1.8230 17 6 2.6937 9.0633 2.5924 18 7 1.4329 8.7742 2.3488 19 14 3.1836 9.7891 4.2424 20 1 3.8107 11.1186 4.0317 21 1 1.9770 9.9399 5.0948 22 1 4.1527 8.8853 4.9126 23 7 2.7705 3.3183 0.7269 24 7 2.3883 2.1446 1.0830 25 1 2.3599 1.8242 1.9981 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0138 1.9564 -2.1170 32 1 3.5874 5.7606 0.2072 33 1 2.9615 7.2755 -2.0927 34 1 4.6332 6.6842 -2.2483 35 1 5.2552 9.1111 -2.2285 36 1 3.6178 9.6787 -1.8224 37 1 5.3339 11.3047 -1.0747 38 1 4.4689 10.6051 0.3145 39 1 6.1063 10.0374 -0.0916 40 1 2.3708 8.0845 0.2337 41 1 0.7581 8.9384 3.0260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714060726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:41 Heat of formation + Delta-G solvation = 29.508407 kcal Electronic energy + Delta-G solvation = -21731.076719 eV Core-core repulsion = 18454.293319 eV Total energy + Delta-G solvation = -3276.783399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.62234 -38.98034 -36.59114 -34.50920 -33.57397 -32.33747 -31.74931 -29.74847 -29.38676 -27.84188 -24.46175 -23.95653 -23.19130 -21.96199 -21.05076 -20.05061 -19.35162 -17.67557 -17.29934 -16.51723 -15.77200 -15.38925 -15.14385 -14.65918 -14.36262 -14.04068 -13.87643 -13.64444 -13.36445 -13.10922 -12.90435 -12.71065 -12.50546 -12.06791 -11.85698 -11.44751 -11.38975 -10.92194 -10.84011 -10.73354 -10.67476 -10.39792 -10.15786 -9.99673 -9.74075 -9.48399 -9.32171 -8.95963 -8.90199 -8.51232 -6.97686 -5.75841 -3.04780 1.76292 2.14217 2.87108 3.42991 3.48165 3.48650 3.63377 3.76739 4.43817 4.56121 4.58715 4.75245 4.97272 5.23503 5.36129 5.46238 5.49424 5.52086 5.62160 5.62994 5.67241 5.89134 5.95226 5.98809 6.01444 6.03234 6.21241 6.43279 6.48315 6.60492 6.63359 6.65851 6.94918 7.01312 7.08688 7.28856 7.70614 7.83600 8.15029 8.41300 8.64549 9.53068 10.08802 10.44675 11.46056 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.004419 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.927231 B = 6334.967423 C = 7696.235293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C 0.008 3.992 4 C -0.177 4.177 5 C -0.007 4.007 6 C 0.598 3.402 7 O -0.549 6.549 8 N -0.697 5.697 9 C 0.114 3.886 10 C 0.163 3.837 11 H 0.054 0.946 12 C -0.133 4.133 13 C -0.146 4.146 14 N -0.721 5.721 15 C -0.236 4.236 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.287 1.287 23 N -0.246 5.246 24 N -0.381 5.381 25 H 0.443 0.557 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -15.793 -4.405 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.205 4.205 5 C -0.168 4.168 6 C 0.382 3.618 7 O -0.426 6.426 8 N -0.348 5.348 9 C -0.011 4.011 10 C 0.053 3.947 11 H 0.072 0.928 12 C -0.174 4.174 13 C -0.204 4.204 14 N -0.363 5.363 15 C -0.367 4.367 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.214 1.214 23 N -0.081 5.081 24 N -0.095 5.095 25 H 0.287 0.713 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.110 -15.084 -4.186 15.796 hybrid contribution -0.333 -0.126 1.211 1.262 sum 1.778 -15.210 -2.975 15.600 Atomic orbital electron populations 1.21794 0.94074 1.02086 1.02871 1.20087 0.96414 0.88800 1.03774 1.21418 1.05997 0.96829 0.87492 1.21465 1.07032 0.92393 0.99653 1.22023 1.07956 0.96943 0.89865 1.16893 0.77295 0.81410 0.86218 1.90744 1.55181 1.83381 1.13287 1.45858 1.64502 1.12062 1.12394 1.21728 1.00249 0.84923 0.94174 1.20564 0.93612 0.91083 0.89479 0.92840 1.22067 0.99935 0.97719 0.97695 1.21768 1.00923 0.96847 1.00819 1.42441 1.05728 1.75727 1.12397 1.19159 0.93312 1.33813 0.90436 0.90991 1.24718 0.95413 1.02228 0.98332 1.69661 0.99828 1.53755 1.34476 0.86344 0.76931 0.79062 0.84285 1.21302 1.21859 1.21366 1.73712 1.17386 1.01958 1.15068 1.43343 1.47721 1.08647 1.09777 0.71290 0.92591 0.91801 0.91871 0.89166 0.90767 0.82250 0.74561 0.91623 0.91671 0.93809 0.92489 0.94903 0.89682 0.94136 0.78053 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.65 16 2 C -0.05 -0.35 6.49 -27.88 -0.18 -0.53 16 3 C 0.01 0.09 6.48 -82.21 -0.53 -0.44 16 4 C -0.18 -2.46 10.73 -39.36 -0.42 -2.88 16 5 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 6 C 0.60 11.35 7.82 -12.39 -0.10 11.25 16 7 O -0.55 -11.43 16.93 5.31 0.09 -11.34 16 8 N -0.70 -13.06 5.39 -61.29 -0.33 -13.39 16 9 C 0.11 2.05 5.23 -4.04 -0.02 2.03 16 10 C 0.16 3.14 2.59 -67.93 -0.18 2.96 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.63 16 12 C -0.13 -2.36 5.61 -26.73 -0.15 -2.51 16 13 C -0.15 -2.67 9.18 37.16 0.34 -2.32 16 14 N -0.72 -17.06 4.50 -53.43 -0.24 -17.30 16 15 C -0.24 -6.16 7.76 -15.06 -0.12 -6.27 16 16 H 0.07 1.83 7.33 -52.49 -0.38 1.44 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 19 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 N -0.25 -3.92 11.92 33.42 0.40 -3.53 16 24 N -0.38 -4.47 6.83 33.50 0.23 -4.24 16 25 H 0.44 3.60 8.96 -190.45 -1.71 1.89 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.42 8.22 7.86 -40.82 -0.32 7.90 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.83 6.01 -51.93 -0.31 1.52 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -31.89 345.91 -8.29 -40.18 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -7.67 Total: 14.66 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.67 Total: -0.46 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.78 Total: -65.14 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.89 -8.29 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714060726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.687 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds