Wall clock time and date at job start Tue Mar 31 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47195 * 2 1 4 4 C 1.35368 * 126.38852 * 275.30085 * 3 2 1 5 5 C 1.41500 * 105.50384 * 180.14122 * 4 3 2 6 6 C 1.47714 * 126.51515 * 179.83930 * 5 4 3 7 7 O 1.21565 * 120.00088 * 359.71878 * 6 5 4 8 8 N 1.34776 * 119.99610 * 179.71485 * 6 5 4 9 9 C 1.46500 * 119.99923 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47226 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47434 * 64.99688 * 10 9 8 12 12 C 1.52997 * 109.47114 * 184.99495 * 10 9 8 13 13 C 1.53007 * 109.47262 * 184.99769 * 12 10 9 14 14 N 1.46498 * 109.46963 * 304.99288 * 10 9 8 15 15 C 1.36943 * 119.99752 * 154.72381 * 14 10 9 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 10 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 10 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 N 1.31807 * 106.96299 * 359.58400 * 5 4 3 24 24 N 1.28465 * 110.07368 * 0.25945 * 23 5 4 25 25 H 0.96995 * 124.88396 * 179.97438 * 24 23 5 26 26 H 1.09006 * 109.46553 * 299.99904 * 1 2 3 27 27 H 1.08997 * 109.46926 * 59.99284 * 1 2 3 28 28 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47076 * 240.00146 * 2 1 3 30 30 H 1.09001 * 109.47388 * 120.00555 * 2 1 3 31 31 H 1.08003 * 127.24678 * 359.97438 * 4 3 2 32 32 H 0.96998 * 119.99957 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.47176 * 59.99567 * 9 8 6 34 34 H 1.09008 * 109.46559 * 299.99697 * 9 8 6 35 35 H 1.09000 * 109.47396 * 304.99878 * 12 10 9 36 36 H 1.09005 * 109.47103 * 64.99798 * 12 10 9 37 37 H 1.09000 * 109.46616 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47004 * 300.00349 * 13 12 10 39 39 H 1.08997 * 109.46461 * 60.00164 * 13 12 10 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 10 9 41 41 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6929 3.4413 -0.5831 6 6 3.0428 4.6375 -1.3760 7 8 2.9246 4.6208 -2.5858 8 7 3.4929 5.7474 -0.7581 9 6 3.8393 6.9340 -1.5443 10 6 4.3199 8.0441 -0.6075 11 1 5.2479 7.7365 -0.1255 12 6 4.5630 9.3218 -1.4133 13 6 5.1611 10.3944 -0.5006 14 7 3.3000 8.2972 0.4132 15 6 3.6592 8.8288 1.6231 16 1 4.6938 9.0656 1.8230 17 6 2.6937 9.0633 2.5924 18 7 1.4329 8.7742 2.3488 19 14 3.1836 9.7891 4.2424 20 1 3.8107 11.1186 4.0317 21 1 1.9770 9.9399 5.0948 22 1 4.1527 8.8853 4.9126 23 7 2.7705 3.3183 0.7269 24 7 2.3883 2.1446 1.0830 25 1 2.3599 1.8242 1.9981 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0138 1.9564 -2.1170 32 1 3.5874 5.7606 0.2072 33 1 2.9615 7.2755 -2.0927 34 1 4.6332 6.6842 -2.2483 35 1 5.2552 9.1111 -2.2285 36 1 3.6178 9.6787 -1.8224 37 1 5.3339 11.3047 -1.0747 38 1 4.4689 10.6051 0.3145 39 1 6.1063 10.0374 -0.0916 40 1 2.3708 8.0845 0.2337 41 1 0.7581 8.9384 3.0260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714060726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:41 Heat of formation + Delta-G solvation = 6.496977 kcal Electronic energy + Delta-G solvation = -21732.074569 eV Core-core repulsion = 18454.293319 eV Total energy + Delta-G solvation = -3277.781250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68836 -40.47307 -38.24020 -35.38261 -35.06824 -34.13162 -32.88860 -31.49307 -30.38400 -29.40647 -26.05900 -24.97874 -24.60908 -23.36071 -22.03550 -21.61552 -20.77821 -19.20950 -18.63469 -17.90448 -17.08745 -16.84022 -16.71032 -16.00942 -15.54097 -15.35610 -15.26108 -14.88764 -14.71798 -14.53604 -14.18704 -14.12742 -13.74232 -13.30610 -12.97286 -12.79061 -12.73464 -12.49731 -12.37638 -12.13601 -12.06594 -11.88460 -11.70067 -11.62429 -11.33168 -11.23101 -10.86328 -10.49174 -9.99325 -9.95524 -8.96571 -7.86181 -5.13528 0.52704 1.12451 1.49885 1.51234 1.56717 1.90447 2.30331 2.39479 2.60595 3.42023 3.48285 3.69348 3.89917 3.95877 4.03416 4.34026 4.40031 4.43126 4.48932 4.54359 4.58204 4.69149 4.77681 4.82654 4.88460 5.07865 5.10303 5.14644 5.20801 5.22405 5.32294 5.41445 5.46103 5.57856 5.61285 5.74183 6.12309 6.33425 6.49703 6.88679 7.16818 7.40970 8.13098 8.38078 9.36815 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.004419 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.927231 B = 6334.967423 C = 7696.235293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C 0.035 3.965 4 C -0.199 4.199 5 C -0.038 4.038 6 C 0.595 3.405 7 O -0.574 6.574 8 N -0.699 5.699 9 C 0.120 3.880 10 C 0.164 3.836 11 H 0.057 0.943 12 C -0.128 4.128 13 C -0.143 4.143 14 N -0.728 5.728 15 C -0.218 4.218 16 H 0.080 0.920 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.303 1.303 22 H -0.280 1.280 23 N -0.275 5.275 24 N -0.366 5.366 25 H 0.459 0.541 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.412 0.588 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.371 0.629 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -17.324 -4.350 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 C -0.091 4.091 4 C -0.227 4.227 5 C -0.197 4.197 6 C 0.380 3.620 7 O -0.453 6.453 8 N -0.349 5.349 9 C -0.004 4.004 10 C 0.056 3.944 11 H 0.075 0.925 12 C -0.169 4.169 13 C -0.200 4.200 14 N -0.369 5.369 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.266 4.266 18 N -0.620 5.620 19 Si 0.792 3.208 20 H -0.207 1.207 21 H -0.230 1.230 22 H -0.206 1.206 23 N -0.112 5.112 24 N -0.082 5.082 25 H 0.306 0.694 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.184 0.816 32 H 0.248 0.752 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.203 0.797 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.343 -16.610 -4.138 17.441 hybrid contribution -0.655 0.264 1.141 1.341 sum 2.689 -16.346 -2.998 16.835 Atomic orbital electron populations 1.21795 0.93829 1.03280 1.01889 1.20302 0.96376 0.86038 1.06001 1.21983 1.03143 0.97990 0.86026 1.21687 1.08063 0.91931 1.00989 1.21900 1.10092 0.97252 0.90483 1.17224 0.76622 0.81953 0.86170 1.90707 1.56364 1.83983 1.14292 1.45886 1.64598 1.12352 1.12037 1.21695 1.00391 0.84386 0.93977 1.20725 0.92414 0.92327 0.88959 0.92518 1.21977 1.00365 0.96311 0.98218 1.21695 1.00266 0.98073 0.99974 1.42569 1.05905 1.75517 1.12870 1.19481 0.93366 1.31274 0.90835 0.90210 1.25397 0.95508 1.04067 1.01582 1.69823 1.00755 1.56322 1.35139 0.85387 0.76140 0.78602 0.80698 1.20670 1.22969 1.20608 1.73620 1.18780 1.03996 1.14818 1.43442 1.46197 1.07609 1.10997 0.69363 0.93295 0.93129 0.89613 0.87504 0.87982 0.81616 0.75192 0.92642 0.89640 0.90397 0.93464 0.92702 0.93383 0.93202 0.79701 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.92 16 2 C -0.05 -0.50 6.49 29.85 0.19 -0.31 16 3 C 0.04 0.71 6.48 41.40 0.27 0.97 16 4 C -0.20 -5.42 10.73 22.41 0.24 -5.18 16 5 C -0.04 -1.29 7.13 42.46 0.30 -0.99 16 6 C 0.59 23.07 7.82 86.75 0.68 23.75 16 7 O -0.57 -24.35 16.93 -3.92 -0.07 -24.41 16 8 N -0.70 -26.62 5.39 -466.10 -2.51 -29.13 16 9 C 0.12 4.28 5.23 86.38 0.45 4.73 16 10 C 0.16 6.21 2.59 44.99 0.12 6.33 16 11 H 0.06 2.13 8.08 -2.39 -0.02 2.12 16 12 C -0.13 -4.32 5.61 30.60 0.17 -4.15 16 13 C -0.14 -4.94 9.18 71.98 0.66 -4.28 16 14 N -0.73 -34.79 4.50 -322.94 -1.45 -36.25 16 15 C -0.22 -11.37 7.76 84.03 0.65 -10.72 16 16 H 0.08 3.99 7.33 -2.91 -0.02 3.97 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 18 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 19 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 N -0.28 -8.80 11.92 -48.17 -0.57 -9.37 16 24 N -0.37 -8.12 6.83 -47.93 -0.33 -8.45 16 25 H 0.46 6.59 8.96 -220.00 -1.97 4.62 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.41 16.62 7.86 -92.71 -0.73 15.89 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -70.23 345.91 -0.07 -70.30 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -2.37 Total: 42.56 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 4.92 Total: 5.60 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -4.58 Total: -141.59 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.23 -0.07 -70.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714060726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.800 kcal (2) G-P(sol) polarization free energy of solvation -70.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds