Wall clock time and date at job start Tue Mar 31 2020 01:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35366 * 127.24468 * 2 1 4 4 N 1.35034 * 107.22263 * 180.09562 * 3 2 1 5 5 C 1.46506 * 124.88249 * 179.89594 * 4 3 2 6 6 N 1.28466 * 110.23334 * 359.62252 * 4 3 2 7 7 C 1.31812 * 110.07358 * 0.23351 * 6 4 3 8 8 C 1.47704 * 126.51559 * 179.97438 * 7 6 4 9 9 O 1.21571 * 119.99723 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00400 * 359.97438 * 8 7 6 11 11 C 1.46494 * 120.00073 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47244 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47284 * 54.99349 * 12 11 10 14 14 C 1.53005 * 109.46539 * 294.99589 * 12 11 10 15 15 C 1.52998 * 109.47258 * 174.99749 * 12 11 10 16 16 N 1.46496 * 109.46904 * 184.99656 * 15 12 11 17 17 C 1.36944 * 119.99949 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00072 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99877 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99659 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00450 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47246 * 89.99980 * 21 19 17 23 23 H 1.48501 * 109.47199 * 210.00456 * 21 19 17 24 24 H 1.48511 * 109.46802 * 330.00068 * 21 19 17 25 25 H 1.09000 * 109.47129 * 270.31074 * 1 2 3 26 26 H 1.08997 * 109.47357 * 30.31423 * 1 2 3 27 27 H 1.09004 * 109.46911 * 150.31605 * 1 2 3 28 28 H 1.07989 * 126.38737 * 359.96295 * 3 2 1 29 29 H 1.08999 * 109.46871 * 269.71642 * 5 4 3 30 30 H 1.08994 * 109.46947 * 29.71350 * 5 4 3 31 31 H 1.08997 * 109.47271 * 149.71867 * 5 4 3 32 32 H 0.97002 * 119.99605 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46970 * 299.99529 * 11 10 8 34 34 H 1.09002 * 109.47848 * 59.99606 * 11 10 8 35 35 H 1.08999 * 109.46994 * 60.00243 * 14 12 11 36 36 H 1.09000 * 109.46403 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47137 * 299.99851 * 14 12 11 38 38 H 1.09000 * 109.47257 * 305.00264 * 15 12 11 39 39 H 1.09008 * 109.47079 * 64.99841 * 15 12 11 40 40 H 0.96996 * 120.00291 * 359.97438 * 16 15 12 41 41 H 0.97009 * 119.99949 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0022 5 6 4.7937 1.4576 -0.0051 6 7 3.5998 -0.6694 0.0045 7 6 2.3634 -1.1264 0.0062 8 6 1.9506 -2.5445 0.0128 9 8 0.7698 -2.8338 0.0143 10 7 2.8829 -3.5179 0.0172 11 6 2.4734 -4.9244 0.0243 12 6 3.7158 -5.8173 0.0276 13 1 4.3556 -5.5467 0.8675 14 6 4.4845 -5.6262 -1.2815 15 6 3.2914 -7.2812 0.1608 16 7 4.4823 -8.1256 0.2838 17 6 4.3491 -9.4822 0.4151 18 1 3.3663 -9.9297 0.4275 19 6 5.4775 -10.2821 0.5322 20 7 5.3495 -11.5861 0.6578 21 14 7.1775 -9.5084 0.5100 22 1 7.5826 -9.1636 1.8964 23 1 8.1517 -10.4701 -0.0657 24 1 7.1498 -8.2762 -0.3185 25 1 -0.3633 0.0056 1.0276 26 1 -0.3634 0.8871 -0.5187 27 1 -0.3633 -0.8929 -0.5089 28 1 2.0220 2.1137 -0.0006 29 1 5.0919 1.6616 -1.0335 30 1 4.5788 2.3970 0.5040 31 1 5.6022 0.9408 0.5119 32 1 3.8250 -3.2870 0.0157 33 1 1.8789 -5.1252 0.9157 34 1 1.8780 -5.1341 -0.8643 35 1 4.7868 -4.5833 -1.3763 36 1 5.3698 -6.2620 -1.2790 37 1 3.8447 -5.8969 -2.1214 38 1 2.6687 -7.3998 1.0474 39 1 2.7257 -7.5774 -0.7227 40 1 5.3650 -7.7239 0.2715 41 1 6.1380 -12.1452 0.7393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714391115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:47 Heat of formation + Delta-G solvation = 47.288941 kcal Electronic energy + Delta-G solvation = -21293.757849 eV Core-core repulsion = 18017.745471 eV Total energy + Delta-G solvation = -3276.012378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.93393 -39.44097 -36.91085 -34.48630 -34.18014 -32.68946 -31.93013 -30.47722 -28.58824 -27.28628 -26.36925 -25.30094 -22.85933 -21.77893 -20.92435 -20.42102 -19.79367 -17.98918 -17.36547 -16.65573 -16.50068 -15.93040 -15.32435 -14.62819 -14.34708 -14.21535 -13.95444 -13.77448 -13.55709 -13.35681 -13.09872 -12.92972 -12.75753 -12.51875 -12.39592 -12.28376 -12.15954 -11.40423 -11.04916 -11.00176 -10.71403 -10.56697 -10.55217 -10.13340 -9.96180 -9.55386 -9.53755 -9.08709 -8.90326 -8.86918 -7.20051 -5.74099 -3.09392 1.38312 1.84519 2.13247 3.18397 3.35392 3.38260 3.40873 3.46332 4.01528 4.43503 4.57668 4.61012 4.61122 4.86968 4.91704 4.99343 5.07313 5.16233 5.29316 5.31897 5.56909 5.61430 5.71856 5.75675 5.80296 5.93461 5.95374 5.96200 6.16173 6.26777 6.30215 6.43323 6.49813 6.52845 6.70762 6.80416 7.40873 7.70065 8.02800 8.20871 8.45016 9.24133 9.96330 10.16303 11.44453 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.003065 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.897306 B = 9132.812589 C = 9951.275854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.145 4.145 3 C -0.026 4.026 4 N -0.285 5.285 5 C 0.087 3.913 6 N -0.261 5.261 7 C -0.015 4.015 8 C 0.602 3.398 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.127 3.873 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.144 4.144 15 C 0.165 3.835 16 N -0.755 5.755 17 C -0.242 4.242 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.181 0.819 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.361 0.639 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 31.546 -2.225 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C -0.169 4.169 4 N -0.073 5.073 5 C -0.053 4.053 6 N -0.097 5.097 7 C -0.176 4.176 8 C 0.386 3.614 9 O -0.407 6.407 10 N -0.365 5.365 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.094 0.906 14 C -0.201 4.201 15 C 0.037 3.963 16 N -0.400 5.400 17 C -0.372 4.372 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.198 0.802 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.241 0.759 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.194 0.806 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.063 30.813 -2.210 31.044 hybrid contribution 1.183 0.944 0.007 1.513 sum -1.880 31.757 -2.203 31.888 Atomic orbital electron populations 1.20184 0.87999 1.03094 1.02416 1.20407 0.97554 0.90419 1.07112 1.22612 0.83662 1.00537 1.10043 1.45262 1.07110 1.03747 1.51156 1.22179 0.84842 0.93772 1.04511 1.73503 1.23300 0.93802 1.19136 1.21905 0.89445 0.95151 1.11050 1.16854 0.85479 0.82520 0.76575 1.90773 1.16820 1.82668 1.50423 1.45919 1.09976 1.06348 1.74218 1.21436 0.97010 0.78395 1.02807 1.21606 0.96082 0.96649 0.99053 0.90571 1.21820 1.00967 1.00430 0.96917 1.20554 0.90295 0.86539 0.98873 1.42693 1.02643 1.04503 1.90207 1.19078 0.95083 0.81030 1.42011 0.89149 1.24673 0.97293 0.95209 1.02105 1.69707 1.28644 1.02869 1.57096 0.86544 0.85808 0.78363 0.77776 1.21115 1.21756 1.20354 0.91429 0.92075 0.89784 0.80208 0.89661 0.88624 0.88447 0.75950 0.90918 0.90940 0.93579 0.91824 0.92372 0.95159 0.95107 0.80636 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.93 36.01 0.36 -0.40 16 2 C -0.14 -1.58 6.25 -104.40 -0.65 -2.23 16 3 C -0.03 -0.21 11.40 -17.17 -0.20 -0.40 16 4 N -0.28 -2.39 3.70 -68.13 -0.25 -2.64 16 5 C 0.09 0.30 11.31 59.85 0.68 0.98 16 6 N -0.26 -3.01 11.67 33.42 0.39 -2.62 16 7 C -0.02 -0.20 7.13 -82.77 -0.59 -0.79 16 8 C 0.60 8.78 7.82 -12.39 -0.10 8.68 16 9 O -0.53 -9.01 15.11 5.30 0.08 -8.93 16 10 N -0.71 -9.46 5.28 -61.29 -0.32 -9.78 16 11 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 12 C -0.11 -1.74 2.46 -90.62 -0.22 -1.97 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 15 C 0.17 3.20 5.65 -4.04 -0.02 3.18 16 16 N -0.75 -18.08 5.13 -59.91 -0.31 -18.39 16 17 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 21 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.97 6.72 -51.93 -0.35 0.63 16 28 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.07 8.13 -51.93 -0.42 -0.35 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.41 4.86 7.38 -40.82 -0.30 4.56 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.57 7.18 -51.93 -0.37 0.20 16 36 H 0.06 1.04 7.18 -51.93 -0.37 0.67 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.36 8.38 4.71 -40.82 -0.19 8.18 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -35.81 342.41 -6.13 -41.94 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.25 Total: 6.77 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.69 Total: -0.08 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.28 Total: -62.43 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.81 -6.13 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714391115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.227 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds