Wall clock time and date at job start Tue Mar 31 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 N 1.46508 * 109.47633 * 119.99983 * 2 1 3 5 5 N 1.28442 * 125.18444 * 305.25280 * 4 2 1 6 6 C 1.30873 * 110.92188 * 180.31000 * 5 4 2 7 7 C 1.39667 * 107.86130 * 359.70962 * 6 5 4 8 8 C 1.36591 * 125.19161 * 125.07401 * 4 2 1 9 9 C 1.47169 * 126.88454 * 359.96797 * 8 4 2 10 10 O 1.21623 * 120.00028 * 354.53637 * 9 8 4 11 11 N 1.34778 * 119.99929 * 174.81604 * 9 8 4 12 12 C 1.46497 * 120.00091 * 184.76047 * 11 9 8 13 13 C 1.52997 * 109.47198 * 179.97438 * 12 11 9 14 14 N 1.46502 * 109.46865 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99837 * 269.99679 * 14 13 12 16 16 C 1.36936 * 119.99890 * 90.00361 * 14 13 12 17 17 H 1.07998 * 120.00261 * 356.16472 * 16 14 13 18 18 C 1.38815 * 119.99687 * 176.16085 * 16 14 13 19 19 N 1.31615 * 120.00279 * 34.43105 * 18 16 14 20 20 Si 1.86805 * 119.99694 * 214.42636 * 18 16 14 21 21 H 1.48502 * 109.46873 * 95.00392 * 20 18 16 22 22 H 1.48506 * 109.46646 * 215.00024 * 20 18 16 23 23 H 1.48500 * 109.47158 * 334.99999 * 20 18 16 24 24 H 1.09009 * 109.46989 * 299.99810 * 1 2 3 25 25 H 1.09000 * 109.47220 * 60.00229 * 1 2 3 26 26 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47607 * 240.00098 * 2 1 3 28 28 H 1.09000 * 109.47303 * 299.99882 * 3 2 1 29 29 H 1.09003 * 109.47179 * 59.99765 * 3 2 1 30 30 H 1.09005 * 109.47702 * 180.02562 * 3 2 1 31 31 H 1.07997 * 126.06507 * 179.68975 * 6 5 4 32 32 H 1.07999 * 127.32231 * 179.97438 * 7 6 5 33 33 H 0.97005 * 119.99853 * 4.75761 * 11 9 8 34 34 H 1.09006 * 109.46929 * 299.99914 * 12 11 9 35 35 H 1.09001 * 109.47077 * 59.99360 * 12 11 9 36 36 H 1.08998 * 109.47514 * 300.00186 * 13 12 11 37 37 H 1.09003 * 109.47048 * 60.00513 * 13 12 11 38 38 H 1.09001 * 109.46814 * 95.82238 * 15 14 13 39 39 H 1.08998 * 109.46924 * 215.81664 * 15 14 13 40 40 H 1.08998 * 109.47620 * 335.82180 * 15 14 13 41 41 H 0.96998 * 120.00351 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.6939 -0.3981 2.4040 6 6 2.2974 -1.1888 3.2546 7 6 3.0836 -2.0831 2.5246 8 6 2.8856 -1.7459 1.1969 9 6 3.4927 -2.3912 0.0218 10 8 3.1584 -2.0535 -1.0978 11 7 4.4149 -3.3601 0.1863 12 6 5.0952 -3.9295 -0.9795 13 6 6.0855 -5.0011 -0.5192 14 7 6.7662 -5.5700 -1.6851 15 6 6.1992 -6.7358 -2.3677 16 6 7.9324 -5.0122 -2.1368 17 1 8.3178 -4.1164 -1.6726 18 6 8.6192 -5.5982 -3.1912 19 7 7.9551 -6.1873 -4.1628 20 14 10.4862 -5.5504 -3.2311 21 1 11.0260 -6.8047 -2.6474 22 1 10.9480 -5.4195 -4.6364 23 1 10.9687 -4.3890 -2.4413 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 2.2042 -1.1554 4.3300 32 1 3.7127 -2.8700 2.9135 33 1 4.6282 -3.6805 1.0767 34 1 4.3589 -4.3773 -1.6470 35 1 5.6323 -3.1415 -1.5075 36 1 6.8217 -4.5530 0.1480 37 1 5.5486 -5.7892 0.0088 38 1 5.6039 -6.4046 -3.2186 39 1 7.0060 -7.3799 -2.7175 40 1 5.5660 -7.2901 -1.6750 41 1 8.4350 -6.5965 -4.8998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714545910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:07 Heat of formation + Delta-G solvation = 45.106054 kcal Electronic energy + Delta-G solvation = -21751.896350 eV Core-core repulsion = 18475.789315 eV Total energy + Delta-G solvation = -3276.107035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55599 -40.49931 -37.91026 -36.80257 -35.74847 -33.46246 -32.05988 -31.30222 -29.63415 -28.32330 -27.94980 -25.65232 -24.15214 -23.69110 -22.46627 -21.87862 -20.63151 -19.00448 -18.66638 -17.39189 -17.09420 -16.75994 -16.54298 -16.24745 -15.79997 -15.54961 -15.42204 -15.00587 -14.85615 -14.34633 -14.22745 -14.03997 -13.97546 -13.29137 -13.20269 -13.14156 -12.80479 -12.71880 -12.46139 -12.45166 -12.34789 -12.09697 -11.93787 -11.80653 -11.78219 -11.07235 -10.41030 -10.37460 -10.07127 -9.95774 -9.07298 -7.99047 -5.14617 0.21972 1.33796 1.47726 1.52189 1.59774 1.69031 2.11457 2.16037 2.54270 3.14851 3.47573 3.50110 3.81562 3.84612 3.98292 4.14350 4.17352 4.22149 4.29084 4.55326 4.57869 4.61333 4.64974 4.69128 4.81865 4.83988 4.89364 5.03325 5.05407 5.09404 5.14651 5.32939 5.40030 5.59014 5.60393 5.73780 5.79827 6.22222 6.40680 7.04348 7.08957 7.12842 7.84677 8.24239 9.10703 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.003262 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.123736 B = 8582.140281 C = 8786.312750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 C -0.151 4.151 4 N -0.259 5.259 5 N -0.292 5.292 6 C -0.008 4.008 7 C -0.174 4.174 8 C -0.065 4.065 9 C 0.582 3.418 10 O -0.582 6.582 11 N -0.690 5.690 12 C 0.114 3.886 13 C 0.148 3.852 14 N -0.615 5.615 15 C 0.160 3.840 16 C -0.277 4.277 17 H 0.081 0.919 18 C -0.043 4.043 19 N -0.920 5.920 20 Si 0.948 3.052 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.268 1.268 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.220 0.780 32 H 0.193 0.807 33 H 0.420 0.580 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.079 0.921 38 H -0.014 1.014 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 9.648 15.861 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.209 4.209 4 N -0.048 5.048 5 N -0.124 5.124 6 C -0.183 4.183 7 C -0.203 4.203 8 C -0.193 4.193 9 C 0.369 3.631 10 O -0.464 6.464 11 N -0.342 5.342 12 C -0.013 4.013 13 C 0.020 3.980 14 N -0.338 5.338 15 C 0.015 3.985 16 C -0.406 4.406 17 H 0.099 0.901 18 C -0.239 4.239 19 N -0.566 5.566 20 Si 0.777 3.223 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.193 1.193 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.237 0.763 32 H 0.211 0.789 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.004 0.996 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.720 10.757 14.714 22.813 hybrid contribution 1.560 -0.824 -0.440 1.819 sum -12.160 9.932 14.274 21.219 Atomic orbital electron populations 1.22035 0.91242 1.02667 1.04612 1.22197 0.97346 0.94936 0.83930 1.22077 1.00940 0.93242 1.04595 1.46153 1.30589 1.22095 1.06006 1.73101 1.23542 1.25817 0.89972 1.24212 0.98099 0.94701 1.01277 1.22718 1.04383 1.03881 0.89286 1.21459 1.03748 0.98009 0.96067 1.17330 0.79207 0.79726 0.86845 1.90712 1.63292 1.65346 1.27012 1.45513 1.39397 1.37530 1.11724 1.22121 0.94797 0.96852 0.87519 1.21101 0.93506 0.94192 0.89167 1.44375 1.25346 1.32071 1.32048 1.20885 0.96027 0.88474 0.93076 1.19531 0.97241 1.09636 1.14146 0.90068 1.25420 1.01832 1.01122 0.95543 1.70460 1.35405 1.42192 1.08541 0.85532 0.82453 0.78108 0.76252 1.21281 1.22876 1.19274 0.90818 0.88229 0.93192 0.86894 0.88175 0.90923 0.93535 0.76328 0.78946 0.74248 0.94022 0.94461 0.91160 0.90288 0.99580 0.94113 0.94065 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.30 71.98 0.67 -2.08 16 2 C 0.12 2.73 3.56 44.99 0.16 2.89 16 3 C -0.15 -2.93 9.45 71.98 0.68 -2.25 16 4 N -0.26 -6.65 3.09 -314.29 -0.97 -7.62 16 5 N -0.29 -6.81 11.52 -57.14 -0.66 -7.47 16 6 C -0.01 -0.14 12.03 85.18 1.02 0.88 16 7 C -0.17 -3.21 10.50 22.66 0.24 -2.97 16 8 C -0.06 -1.69 6.96 40.79 0.28 -1.40 16 9 C 0.58 18.24 7.79 86.59 0.67 18.91 16 10 O -0.58 -22.72 14.40 -4.10 -0.06 -22.78 16 11 N -0.69 -19.00 5.54 -466.63 -2.59 -21.59 16 12 C 0.11 4.10 6.00 86.38 0.52 4.62 16 13 C 0.15 5.22 5.82 86.38 0.50 5.72 16 14 N -0.62 -29.47 2.93 -726.92 -2.13 -31.60 16 15 C 0.16 7.72 9.24 127.77 1.18 8.90 16 16 C -0.28 -14.83 9.64 84.03 0.81 -14.01 16 17 H 0.08 4.23 8.02 -2.91 -0.02 4.20 16 18 C -0.04 -2.38 4.85 84.86 0.41 -1.97 16 19 N -0.92 -54.05 10.80 21.65 0.23 -53.82 16 20 Si 0.95 44.09 29.67 68.60 2.04 46.12 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.11 3.25 5.32 -2.39 -0.01 3.24 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.19 2.08 7.58 -2.91 -0.02 2.06 16 33 H 0.42 8.07 7.50 -92.70 -0.70 7.37 16 34 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 37 H 0.08 2.31 7.86 -2.39 -0.02 2.30 16 38 H -0.01 -0.76 8.04 -2.39 -0.02 -0.78 16 39 H 0.04 2.16 6.18 -2.39 -0.01 2.14 16 40 H 0.04 1.63 7.83 -2.39 -0.02 1.61 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -71.30 342.26 3.34 -67.96 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.33 Total: 13.56 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.15 Total: 17.23 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -6.12 Total: -122.09 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.06 Total: -22.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.04 Total: 46.12 kcal Total: -71.30 3.34 -67.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714545910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.062 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds