Wall clock time and date at job start Tue Mar 31 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47213 * 2 1 4 4 N 1.46496 * 109.47316 * 180.02562 * 3 2 1 5 5 C 1.36946 * 119.99662 * 275.30802 * 4 3 2 6 6 H 1.08003 * 119.99784 * 37.57765 * 5 4 3 7 7 C 1.38814 * 119.99741 * 217.57644 * 5 4 3 8 8 N 1.31613 * 119.99902 * 21.42529 * 7 5 4 9 9 Si 1.86798 * 119.99611 * 201.41992 * 7 5 4 10 10 H 1.48503 * 109.47237 * 60.00476 * 9 7 5 11 11 H 1.48497 * 109.46796 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47344 * 300.00263 * 9 7 5 13 13 C 1.46497 * 120.00446 * 95.30303 * 4 3 2 14 14 C 1.52998 * 109.47279 * 270.00185 * 13 4 3 15 15 N 1.46505 * 109.47203 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00110 * 179.72105 * 15 14 13 17 17 O 1.21283 * 120.00194 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00027 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47219 * 180.02562 * 18 16 15 20 20 N 1.30500 * 125.64701 * 304.69356 * 19 18 16 21 21 C 1.34131 * 109.25525 * 179.89308 * 20 19 18 22 22 C 1.34669 * 108.02059 * 0.36882 * 21 20 19 23 23 N 1.35044 * 125.65245 * 124.99756 * 19 18 16 24 24 H 0.96994 * 126.39443 * 359.97438 * 23 19 18 25 25 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47444 * 300.00309 * 1 2 3 27 27 H 1.09001 * 109.46851 * 60.00650 * 1 2 3 28 28 H 1.09001 * 109.47231 * 239.99264 * 2 1 3 29 29 H 1.09004 * 109.46682 * 119.99857 * 2 1 3 30 30 H 1.08997 * 109.47168 * 59.99522 * 3 2 1 31 31 H 1.09004 * 109.47179 * 299.99552 * 3 2 1 32 32 H 0.97004 * 120.00241 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47018 * 149.99843 * 13 4 3 34 34 H 1.08995 * 109.46952 * 30.00235 * 13 4 3 35 35 H 1.09007 * 109.47093 * 60.00105 * 14 13 4 36 36 H 1.08995 * 109.47169 * 299.99916 * 14 13 4 37 37 H 0.96998 * 119.99959 * 0.02562 * 15 14 13 38 38 H 1.08999 * 109.46870 * 300.00278 * 18 16 15 39 39 H 1.08992 * 109.46943 * 60.00761 * 18 16 15 40 40 H 1.08002 * 125.99185 * 180.11393 * 21 20 19 41 41 H 1.07997 * 126.58880 * 179.81323 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1800 6 1 3.8184 0.6869 1.9620 7 6 5.3623 2.0510 1.3716 8 7 5.6025 3.1237 0.6478 9 14 6.5988 1.4953 2.6569 10 1 7.0675 0.1240 2.3326 11 1 7.7562 2.4255 2.6649 12 1 5.9553 1.4949 3.9952 13 6 4.2370 1.5599 -1.2641 14 6 4.4918 0.1645 -1.8376 15 7 5.2234 0.2820 -3.1014 16 6 5.5649 -0.8263 -3.7879 17 8 5.2662 -1.9210 -3.3597 18 6 6.3179 -0.7054 -5.0877 19 6 6.5742 -2.0801 -5.6495 20 7 7.1752 -3.0565 -5.0263 21 6 7.2237 -4.1301 -5.8288 22 6 6.6374 -3.8042 -6.9965 23 7 6.2252 -2.5039 -6.8833 24 1 5.7679 -1.9838 -7.5625 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 6.4214 3.6260 0.7820 33 1 5.1895 2.0595 -1.0871 34 1 3.6477 2.1419 -1.9727 35 1 3.5393 -0.3350 -2.0146 36 1 5.0811 -0.4174 -1.1290 37 1 5.4658 1.1574 -3.4419 38 1 5.7264 -0.1275 -5.7979 39 1 7.2682 -0.2016 -4.9115 40 1 7.6603 -5.0869 -5.5832 41 1 6.5153 -4.4458 -7.8567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714659155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:29 Heat of formation + Delta-G solvation = 7.835533 kcal Electronic energy + Delta-G solvation = -21678.504716 eV Core-core repulsion = 18400.781510 eV Total energy + Delta-G solvation = -3277.723206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.94501 -40.47976 -38.22170 -35.67281 -34.60146 -33.45517 -33.15610 -32.46710 -29.95856 -28.05634 -27.33575 -25.08353 -22.78028 -22.46528 -22.16598 -21.81125 -21.08943 -18.93486 -18.69844 -17.88300 -17.00659 -16.75004 -16.56120 -15.98389 -15.74869 -15.60475 -15.06197 -14.86548 -14.62214 -14.46115 -14.34454 -14.18615 -13.85275 -13.34400 -13.15096 -12.97825 -12.89512 -12.62565 -12.52424 -12.21792 -12.02358 -11.87188 -11.65819 -11.32900 -10.97956 -10.93699 -10.82138 -10.52259 -9.96752 -9.32395 -8.58061 -7.85735 -5.48269 1.10141 1.43696 1.47872 1.53935 1.72316 2.00282 2.27066 2.46746 2.60881 3.22277 3.40449 3.74992 4.05526 4.06787 4.22454 4.35654 4.38703 4.44006 4.45970 4.55697 4.62203 4.68764 4.75224 4.80383 4.86832 4.99282 5.15771 5.17378 5.24620 5.27681 5.43312 5.48189 5.62664 5.66771 5.76658 5.84581 6.45404 6.55593 6.70884 7.15726 7.25137 7.38400 7.83827 8.35089 9.09698 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.004117 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.172198 B = 6799.647533 C = 7834.169112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.147 3.853 4 N -0.598 5.598 5 C -0.274 4.274 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.146 3.854 14 C 0.122 3.878 15 N -0.712 5.712 16 C 0.506 3.494 17 O -0.579 6.579 18 C -0.045 4.045 19 C 0.200 3.800 20 N -0.522 5.522 21 C -0.073 4.073 22 C -0.032 4.032 23 N -0.551 5.551 24 H 0.437 0.563 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.020 0.980 37 H 0.415 0.585 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.175 0.825 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -5.008 -19.003 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.405 4.405 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.019 3.981 14 C -0.004 4.004 15 N -0.365 5.365 16 C 0.292 3.708 17 O -0.457 6.457 18 C -0.086 4.086 19 C -0.065 4.065 20 N -0.242 5.242 21 C -0.220 4.220 22 C -0.167 4.167 23 N -0.157 5.157 24 H 0.278 0.722 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.252 0.748 38 H 0.173 0.827 39 H 0.156 0.844 40 H 0.192 0.808 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.394 -5.607 -17.851 18.763 hybrid contribution 0.464 -0.024 -0.051 0.468 sum -0.929 -5.631 -17.902 18.790 Atomic orbital electron populations 1.21650 0.94152 1.01723 1.02086 1.22024 0.96498 0.98931 1.00078 1.21037 0.83332 0.94361 0.99155 1.43837 1.00884 1.85076 1.02025 1.19112 1.06462 1.20026 0.94853 0.93376 1.25680 1.01880 0.94683 0.99920 1.70056 1.25968 1.15341 1.43694 0.85674 0.79319 0.77371 0.80090 1.21659 1.21095 1.19987 1.20934 0.99251 0.91807 0.86115 1.21854 0.94089 1.00791 0.83711 1.45874 1.57833 1.09492 1.23338 1.20967 0.79262 0.83780 0.86777 1.90736 1.55778 1.28425 1.70808 1.20040 1.03901 0.90624 0.94039 1.22626 1.02088 0.97419 0.84337 1.70176 1.20125 1.01163 1.32732 1.22778 1.07661 0.99152 0.92413 1.23303 1.04638 0.86261 1.02508 1.43167 1.45906 1.12389 1.14191 0.72158 0.92419 0.92541 0.91912 0.93792 0.94589 0.94657 0.92975 0.93600 0.90787 0.93312 0.93743 0.96115 0.74845 0.82673 0.84410 0.80794 0.76328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.14 -5.00 6.23 30.59 0.19 -4.81 16 3 C 0.15 6.06 5.72 86.38 0.49 6.55 16 4 N -0.60 -29.30 2.43 -702.03 -1.71 -31.01 16 5 C -0.27 -15.11 9.45 84.03 0.79 -14.32 16 6 H 0.05 2.71 7.92 -2.91 -0.02 2.69 16 7 C -0.02 -1.27 4.95 84.86 0.42 -0.85 16 8 N -0.91 -50.81 11.47 21.65 0.25 -50.56 16 9 Si 0.95 45.12 29.60 68.60 2.03 47.15 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.15 6.44 5.45 86.38 0.47 6.92 16 14 C 0.12 5.08 6.00 86.38 0.52 5.60 16 15 N -0.71 -22.70 5.56 -463.06 -2.57 -25.27 16 16 C 0.51 16.59 7.82 87.66 0.69 17.28 16 17 O -0.58 -25.76 15.56 -3.04 -0.05 -25.80 16 18 C -0.04 -0.92 6.33 29.10 0.18 -0.73 16 19 C 0.20 5.13 6.95 138.13 0.96 6.09 16 20 N -0.52 -17.59 10.60 -188.12 -1.99 -19.58 16 21 C -0.07 -1.89 11.87 83.52 0.99 -0.90 16 22 C -0.03 -0.56 12.04 83.09 1.00 0.44 16 23 N -0.55 -9.19 6.15 -186.27 -1.15 -10.33 16 24 H 0.44 3.34 8.96 -92.71 -0.83 2.51 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 32 H 0.25 13.78 8.31 -92.71 -0.77 13.00 16 33 H 0.07 3.69 5.52 -2.39 -0.01 3.68 16 34 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 35 H 0.04 1.89 6.64 -2.38 -0.02 1.88 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.41 10.08 8.47 -92.71 -0.79 9.30 16 38 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -80.79 344.75 1.66 -79.13 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.57 Total: 18.18 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 7.42 Total: 18.09 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -7.17 Total: -136.75 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -80.79 1.66 -79.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.962 kcal (2) G-P(sol) polarization free energy of solvation -80.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds