Wall clock time and date at job start Tue Mar 31 2020 02:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47433 * 2 1 4 4 H 1.08996 * 109.46810 * 305.00016 * 3 2 1 5 5 C 1.52999 * 109.47072 * 185.00215 * 3 2 1 6 6 N 1.46501 * 109.46540 * 184.99917 * 5 3 2 7 7 C 1.34785 * 119.99476 * 179.97438 * 6 5 3 8 8 O 1.21680 * 119.99991 * 354.64539 * 7 6 5 9 9 C 1.46770 * 119.99655 * 174.64824 * 7 6 5 10 10 C 1.36658 * 126.84529 * 5.01287 * 9 7 6 11 11 N 1.33319 * 107.78466 * 179.89675 * 10 9 7 12 12 C 1.30858 * 109.68750 * 0.37972 * 11 10 9 13 13 C 1.50700 * 125.42024 * 179.74176 * 12 11 10 14 14 N 1.34495 * 109.15863 * 359.76272 * 12 11 10 15 15 C 1.46501 * 126.47024 * 179.97438 * 14 12 11 16 16 N 1.46498 * 109.47031 * 64.99737 * 3 2 1 17 17 C 1.36939 * 120.00128 * 275.00418 * 16 3 2 18 18 H 1.07996 * 120.00033 * 359.97438 * 17 16 3 19 19 C 1.38807 * 119.99684 * 180.02562 * 17 16 3 20 20 N 1.31619 * 120.00224 * 359.71710 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47232 * 179.72089 * 21 19 17 23 23 H 1.48498 * 109.46905 * 299.71983 * 21 19 17 24 24 H 1.48504 * 109.47164 * 59.71958 * 21 19 17 25 25 H 1.09004 * 109.47240 * 60.00065 * 1 2 3 26 26 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47059 * 300.00097 * 1 2 3 28 28 H 1.09003 * 109.47059 * 239.99903 * 2 1 3 29 29 H 1.09004 * 109.47240 * 119.99935 * 2 1 3 30 30 H 1.08996 * 109.47018 * 304.99411 * 5 3 2 31 31 H 1.08993 * 109.47547 * 65.00313 * 5 3 2 32 32 H 0.96995 * 120.00966 * 359.97438 * 6 5 3 33 33 H 1.07998 * 126.10794 * 0.02562 * 10 9 7 34 34 H 1.09001 * 109.46988 * 270.02409 * 13 12 11 35 35 H 1.09000 * 109.46903 * 30.02732 * 13 12 11 36 36 H 1.08999 * 109.46984 * 150.02472 * 13 12 11 37 37 H 1.09001 * 109.47354 * 273.00011 * 15 14 12 38 38 H 1.08996 * 109.47219 * 32.99980 * 15 14 12 39 39 H 1.09003 * 109.47189 * 153.00237 * 15 14 12 40 40 H 0.97004 * 119.99675 * 95.00435 * 16 3 2 41 41 H 0.96996 * 120.00414 * 0.28512 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0630 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0859 8 8 6.1733 2.1381 -0.1596 9 6 5.8762 4.4461 -0.0840 10 6 5.1319 5.5792 0.0878 11 7 5.9586 6.6232 0.0237 12 6 7.1807 6.2054 -0.1872 13 6 8.3940 7.0885 -0.3253 14 7 7.1814 4.8625 -0.2615 15 6 8.3463 4.0036 -0.4886 16 7 1.6524 2.0975 1.2518 17 6 0.4156 2.6735 1.3688 18 1 -0.2740 2.6452 0.5381 19 6 0.0487 3.2945 2.5547 20 7 0.8873 3.3249 3.5686 21 14 -1.6383 4.0809 2.7141 22 1 -1.7853 4.6664 4.0708 23 1 -1.7839 5.1509 1.6947 24 1 -2.6867 3.0505 2.5034 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8499 1.0377 -1.0960 32 1 3.4411 3.5483 0.1308 33 1 4.0648 5.6214 0.2489 34 1 8.5303 7.3575 -1.3728 35 1 8.2544 7.9929 0.2670 36 1 9.2749 6.5538 0.0301 37 1 8.5107 3.8900 -1.5601 38 1 9.2263 4.4566 -0.0320 39 1 8.1686 3.0250 -0.0426 40 1 2.2720 2.1231 1.9977 41 1 1.7634 2.9170 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715073668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:28 Heat of formation + Delta-G solvation = 25.590861 kcal Electronic energy + Delta-G solvation = -22107.183086 eV Core-core repulsion = 18830.229809 eV Total energy + Delta-G solvation = -3276.953277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 13.01 seconds Orbital eigenvalues (eV) -42.25251 -39.16302 -36.83732 -34.44025 -33.65345 -32.65092 -31.95513 -29.70253 -28.54242 -27.30397 -26.56942 -23.75180 -22.99406 -22.12935 -20.37214 -20.21961 -19.58646 -17.78755 -17.37543 -16.24907 -16.10492 -15.61600 -15.15997 -14.69454 -14.19405 -14.03968 -13.74943 -13.61939 -13.48531 -13.19143 -13.15314 -12.98315 -12.79746 -12.51866 -12.48916 -12.04594 -11.65661 -11.02421 -10.80001 -10.60634 -10.38068 -10.29771 -10.11828 -9.89645 -9.76569 -9.69443 -9.21363 -8.97160 -8.87707 -8.39784 -7.11398 -6.12103 -3.14472 1.34173 2.44718 2.81611 3.46955 3.50527 3.51510 3.53775 3.70905 4.25842 4.61990 4.63565 4.70224 4.94463 5.01441 5.22459 5.28276 5.30333 5.34185 5.42463 5.44507 5.52773 5.64280 5.80597 5.86249 5.88163 6.00250 6.14470 6.28694 6.43623 6.48950 6.51600 6.54589 6.75019 6.92478 6.99967 7.20097 7.72265 7.77765 7.92918 8.35478 8.71418 9.15559 10.02577 10.17090 11.34711 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.004637 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.714398 B = 6036.560693 C = 7301.600448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.116 3.884 6 N -0.698 5.698 7 C 0.592 3.408 8 O -0.561 6.561 9 C -0.086 4.086 10 C 0.046 3.954 11 N -0.493 5.493 12 C 0.219 3.781 13 C -0.069 4.069 14 N -0.426 5.426 15 C 0.065 3.935 16 N -0.733 5.733 17 C -0.331 4.331 18 H 0.068 0.932 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.075 2.925 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.296 1.296 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.368 0.632 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 1.778 -9.889 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.008 4.008 6 N -0.349 5.349 7 C 0.379 3.621 8 O -0.442 6.442 9 C -0.202 4.202 10 C -0.108 4.108 11 N -0.212 5.212 12 C -0.042 4.042 13 C -0.127 4.127 14 N -0.108 5.108 15 C -0.077 4.077 16 N -0.376 5.376 17 C -0.461 4.461 18 H 0.086 0.914 19 C -0.239 4.239 20 N -0.585 5.585 21 Si 0.906 3.094 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.223 1.223 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.200 0.800 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.201 0.799 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.352 2.658 -9.043 15.538 hybrid contribution 1.047 -1.511 -0.847 2.024 sum 13.399 1.147 -9.890 16.693 Atomic orbital electron populations 1.21764 0.95505 0.99625 1.03418 1.22056 0.97190 0.98164 0.99959 1.20507 0.89535 0.92901 0.91241 0.92583 1.21745 0.95826 0.81905 1.01314 1.45643 1.06140 1.11227 1.71922 1.16759 0.82951 0.85772 0.76666 1.90726 1.55446 1.45587 1.52409 1.20772 0.85078 0.95909 1.18440 1.22777 0.99988 0.86743 1.01310 1.70115 0.99343 1.31266 1.20473 1.23433 0.96439 0.81085 1.03287 1.20242 0.90640 0.98038 1.03773 1.45025 1.07332 1.07167 1.51233 1.22277 0.85658 0.96557 1.03198 1.42467 1.16877 1.67047 1.11228 1.19982 0.92607 1.32505 1.01023 0.91414 1.25694 1.05655 1.00299 0.92272 1.70888 1.08409 1.47245 1.31940 0.83303 0.74328 0.75890 0.75855 1.21143 1.22226 1.22322 0.94061 0.94870 0.89559 0.93781 0.92678 0.91627 0.91573 0.75008 0.80029 0.89878 0.88800 0.90709 0.90418 0.89744 0.87375 0.79856 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.15 0.34 -2.26 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.17 3.07 2.59 -67.93 -0.18 2.90 16 4 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 5 C 0.12 1.93 5.24 -4.04 -0.02 1.91 16 6 N -0.70 -11.69 5.37 -61.59 -0.33 -12.02 16 7 C 0.59 10.17 7.78 -12.81 -0.10 10.07 16 8 O -0.56 -10.52 14.81 5.21 0.08 -10.44 16 9 C -0.09 -1.38 6.91 -82.14 -0.57 -1.94 16 10 C 0.05 0.74 11.37 -17.48 -0.20 0.54 16 11 N -0.49 -7.86 11.20 -10.58 -0.12 -7.98 16 12 C 0.22 2.88 7.88 -155.61 -1.23 1.65 16 13 C -0.07 -0.54 10.18 36.01 0.37 -0.18 16 14 N -0.43 -5.80 3.17 -117.27 -0.37 -6.18 16 15 C 0.07 0.66 10.57 59.85 0.63 1.29 16 16 N -0.73 -16.44 4.51 -53.43 -0.24 -16.68 16 17 C -0.33 -8.39 7.75 -15.06 -0.12 -8.51 16 18 H 0.07 1.70 7.32 -52.49 -0.38 1.32 16 19 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 20 N -0.94 -27.79 13.70 55.49 0.76 -27.03 16 21 Si 1.08 24.92 29.92 -169.99 -5.09 19.83 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 7.04 7.08 -40.82 -0.29 6.75 16 33 H 0.18 2.74 7.46 -52.49 -0.39 2.35 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.43 7.09 -51.93 -0.37 0.06 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.58 7.11 -51.93 -0.37 0.21 16 39 H 0.11 1.31 6.24 -51.93 -0.32 0.99 16 40 H 0.37 8.85 6.63 -40.82 -0.27 8.58 16 41 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -32.07 337.62 -7.54 -39.61 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.01 Total: 13.94 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.31 Total: 1.85 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.30 Total: -69.89 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.07 -7.54 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715073668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.205 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.01 seconds