Wall clock time and date at job start Tue Mar 31 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47433 * 2 1 4 4 H 1.08996 * 109.46810 * 305.00016 * 3 2 1 5 5 C 1.52999 * 109.47072 * 185.00215 * 3 2 1 6 6 N 1.46501 * 109.46540 * 184.99917 * 5 3 2 7 7 C 1.34785 * 119.99476 * 179.97438 * 6 5 3 8 8 O 1.21680 * 119.99991 * 354.64539 * 7 6 5 9 9 C 1.46770 * 119.99655 * 174.64824 * 7 6 5 10 10 C 1.36658 * 126.84529 * 5.01287 * 9 7 6 11 11 N 1.33319 * 107.78466 * 179.89675 * 10 9 7 12 12 C 1.30858 * 109.68750 * 0.37972 * 11 10 9 13 13 C 1.50700 * 125.42024 * 179.74176 * 12 11 10 14 14 N 1.34495 * 109.15863 * 359.76272 * 12 11 10 15 15 C 1.46501 * 126.47024 * 179.97438 * 14 12 11 16 16 N 1.46498 * 109.47031 * 64.99737 * 3 2 1 17 17 C 1.36939 * 120.00128 * 275.00418 * 16 3 2 18 18 H 1.07996 * 120.00033 * 359.97438 * 17 16 3 19 19 C 1.38807 * 119.99684 * 180.02562 * 17 16 3 20 20 N 1.31619 * 120.00224 * 359.71710 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47232 * 179.72089 * 21 19 17 23 23 H 1.48498 * 109.46905 * 299.71983 * 21 19 17 24 24 H 1.48504 * 109.47164 * 59.71958 * 21 19 17 25 25 H 1.09004 * 109.47240 * 60.00065 * 1 2 3 26 26 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47059 * 300.00097 * 1 2 3 28 28 H 1.09003 * 109.47059 * 239.99903 * 2 1 3 29 29 H 1.09004 * 109.47240 * 119.99935 * 2 1 3 30 30 H 1.08996 * 109.47018 * 304.99411 * 5 3 2 31 31 H 1.08993 * 109.47547 * 65.00313 * 5 3 2 32 32 H 0.96995 * 120.00966 * 359.97438 * 6 5 3 33 33 H 1.07998 * 126.10794 * 0.02562 * 10 9 7 34 34 H 1.09001 * 109.46988 * 270.02409 * 13 12 11 35 35 H 1.09000 * 109.46903 * 30.02732 * 13 12 11 36 36 H 1.08999 * 109.46984 * 150.02472 * 13 12 11 37 37 H 1.09001 * 109.47354 * 273.00011 * 15 14 12 38 38 H 1.08996 * 109.47219 * 32.99980 * 15 14 12 39 39 H 1.09003 * 109.47189 * 153.00237 * 15 14 12 40 40 H 0.97004 * 119.99675 * 95.00435 * 16 3 2 41 41 H 0.96996 * 120.00414 * 0.28512 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0630 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0859 8 8 6.1733 2.1381 -0.1596 9 6 5.8762 4.4461 -0.0840 10 6 5.1319 5.5792 0.0878 11 7 5.9586 6.6232 0.0237 12 6 7.1807 6.2054 -0.1872 13 6 8.3940 7.0885 -0.3253 14 7 7.1814 4.8625 -0.2615 15 6 8.3463 4.0036 -0.4886 16 7 1.6524 2.0975 1.2518 17 6 0.4156 2.6735 1.3688 18 1 -0.2740 2.6452 0.5381 19 6 0.0487 3.2945 2.5547 20 7 0.8873 3.3249 3.5686 21 14 -1.6383 4.0809 2.7141 22 1 -1.7853 4.6664 4.0708 23 1 -1.7839 5.1509 1.6947 24 1 -2.6867 3.0505 2.5034 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8499 1.0377 -1.0960 32 1 3.4411 3.5483 0.1308 33 1 4.0648 5.6214 0.2489 34 1 8.5303 7.3575 -1.3728 35 1 8.2544 7.9929 0.2670 36 1 9.2749 6.5538 0.0301 37 1 8.5107 3.8900 -1.5601 38 1 9.2263 4.4566 -0.0320 39 1 8.1686 3.0250 -0.0426 40 1 2.2720 2.1231 1.9977 41 1 1.7634 2.9170 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715073668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:17 Heat of formation + Delta-G solvation = 3.768231 kcal Electronic energy + Delta-G solvation = -22108.129386 eV Core-core repulsion = 18830.229809 eV Total energy + Delta-G solvation = -3277.899577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -43.34618 -40.52897 -38.41335 -35.73073 -34.98971 -34.32702 -32.91321 -31.35210 -29.90918 -28.40146 -27.62719 -25.49800 -24.51818 -23.44334 -21.80235 -21.39221 -20.77100 -19.45866 -18.86681 -17.35035 -17.26900 -16.98594 -16.63460 -16.25107 -15.72306 -15.44207 -15.26125 -14.92956 -14.65759 -14.29368 -14.22498 -14.16945 -13.78551 -13.67896 -13.30426 -13.20738 -13.12691 -12.72829 -12.56385 -12.10831 -11.99556 -11.82548 -11.55655 -11.49304 -11.17281 -11.03163 -10.85454 -10.79162 -10.23917 -9.54762 -9.06373 -8.25211 -5.20962 0.16837 1.40240 1.63082 1.68707 1.71240 1.86561 2.18948 2.29487 2.76686 3.34563 3.50265 3.60990 3.74015 3.81660 3.86153 3.92112 4.27020 4.27893 4.31454 4.39953 4.48659 4.51551 4.62191 4.69524 4.72975 4.77245 5.01293 5.02029 5.04927 5.10448 5.14119 5.32780 5.39446 5.48289 5.66278 5.74687 6.04428 6.36342 6.59454 6.79956 7.01073 7.16160 8.06287 8.18721 9.25096 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.004637 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.714398 B = 6036.560693 C = 7301.600448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.058 0.942 5 C 0.125 3.875 6 N -0.699 5.699 7 C 0.593 3.407 8 O -0.580 6.580 9 C -0.109 4.109 10 C 0.037 3.963 11 N -0.528 5.528 12 C 0.231 3.769 13 C -0.068 4.068 14 N -0.429 5.429 15 C 0.061 3.939 16 N -0.739 5.739 17 C -0.305 4.305 18 H 0.073 0.927 19 C -0.103 4.103 20 N -0.980 5.980 21 Si 1.117 2.883 22 H -0.302 1.302 23 H -0.278 1.278 24 H -0.281 1.281 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.410 0.590 33 H 0.179 0.821 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.358 0.642 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.213 1.838 -11.761 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.076 0.924 5 C 0.001 3.999 6 N -0.349 5.349 7 C 0.380 3.620 8 O -0.462 6.462 9 C -0.226 4.226 10 C -0.118 4.118 11 N -0.248 5.248 12 C -0.032 4.032 13 C -0.126 4.126 14 N -0.109 5.109 15 C -0.080 4.080 16 N -0.382 5.382 17 C -0.437 4.437 18 H 0.091 0.909 19 C -0.294 4.294 20 N -0.629 5.629 21 Si 0.944 3.056 22 H -0.229 1.229 23 H -0.205 1.205 24 H -0.208 1.208 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.196 0.804 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.190 0.810 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.503 2.679 -10.979 17.608 hybrid contribution 0.777 -1.557 -0.367 1.779 sum 14.279 1.121 -11.346 18.272 Atomic orbital electron populations 1.21687 0.95908 1.00583 1.01787 1.21975 0.96715 0.97057 1.01144 1.20663 0.90679 0.93387 0.89186 0.92395 1.21662 0.94381 0.81870 1.01986 1.45637 1.06189 1.11160 1.71903 1.16908 0.82735 0.86204 0.76115 1.90708 1.55762 1.46250 1.53491 1.20636 0.86584 0.95075 1.20282 1.22840 1.00235 0.87254 1.01432 1.70121 1.00725 1.31625 1.22323 1.24428 0.97043 0.81371 1.00335 1.20530 0.89197 0.97492 1.05401 1.45288 1.07206 1.07769 1.50671 1.22507 0.85562 0.95371 1.04512 1.42593 1.15860 1.67349 1.12396 1.20228 0.93204 1.29888 1.00342 0.90942 1.26817 1.08026 1.01946 0.92622 1.70995 1.08594 1.49941 1.33354 0.82736 0.71718 0.75886 0.75252 1.22870 1.20471 1.20782 0.93229 0.92757 0.93423 0.90360 0.93642 0.92630 0.89523 0.75304 0.80389 0.87770 0.88344 0.87797 0.88768 0.85946 0.89639 0.81018 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -4.15 5.61 30.59 0.17 -3.98 16 3 C 0.17 6.03 2.59 44.99 0.12 6.14 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.13 4.06 5.24 86.38 0.45 4.51 16 6 N -0.70 -23.57 5.37 -467.00 -2.51 -26.08 16 7 C 0.59 20.50 7.78 86.47 0.67 21.17 16 8 O -0.58 -21.70 14.81 -4.28 -0.06 -21.76 16 9 C -0.11 -3.51 6.91 40.01 0.28 -3.24 16 10 C 0.04 1.22 11.37 84.10 0.96 2.18 16 11 N -0.53 -16.68 11.20 -187.40 -2.10 -18.77 16 12 C 0.23 5.66 7.88 138.20 1.09 6.74 16 13 C -0.07 -0.85 10.18 71.24 0.73 -0.13 16 14 N -0.43 -11.11 3.17 -524.94 -1.67 -12.77 16 15 C 0.06 1.10 10.57 127.77 1.35 2.45 16 16 N -0.74 -33.50 4.51 -322.95 -1.45 -34.96 16 17 C -0.31 -15.54 7.75 84.03 0.65 -14.89 16 18 H 0.07 3.59 7.32 -2.91 -0.02 3.57 16 19 C -0.10 -5.67 5.50 84.86 0.47 -5.20 16 20 N -0.98 -59.68 13.70 21.65 0.30 -59.38 16 21 Si 1.12 50.73 29.92 68.60 2.05 52.78 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.99 5.99 -2.39 -0.01 1.97 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.41 14.33 7.08 -92.71 -0.66 13.67 16 33 H 0.18 5.68 7.46 -2.91 -0.02 5.65 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 0.72 7.09 -2.39 -0.02 0.70 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.22 7.11 -2.39 -0.02 1.20 16 39 H 0.08 1.99 6.24 -2.39 -0.01 1.98 16 40 H 0.36 17.74 6.63 -92.71 -0.61 17.12 16 41 H 0.24 14.80 6.77 -92.71 -0.63 14.17 16 Total: -1.00 -70.80 337.62 2.07 -68.74 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.08 Total: 40.61 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.59 Total: 11.60 kcal Atomic # 7 Polarization: -144.53 SS G_CDS: -7.43 Total: -151.97 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.06 Total: -21.76 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -70.80 2.07 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715073668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.506 kcal (2) G-P(sol) polarization free energy of solvation -70.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds