Wall clock time and date at job start Tue Mar 31 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21680 * 120.00123 * 359.97438 * 7 6 5 9 9 C 1.46769 * 119.99770 * 179.97438 * 7 6 5 10 10 N 1.38151 * 126.84397 * 0.02562 * 9 7 6 11 11 H 0.96991 * 126.47419 * 359.97438 * 10 9 7 12 12 C 1.34499 * 107.05215 * 179.97438 * 10 9 7 13 13 C 1.50696 * 125.41563 * 180.02562 * 12 10 9 14 14 N 1.30859 * 109.16412 * 359.97438 * 12 10 9 15 15 C 1.33324 * 109.68150 * 359.76626 * 14 12 10 16 16 C 1.50704 * 126.10153 * 180.27198 * 15 14 12 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 28 28 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.09001 * 109.47410 * 90.00089 * 13 12 10 35 35 H 1.09002 * 109.46802 * 209.99452 * 13 12 10 36 36 H 1.08999 * 109.47470 * 329.99739 * 13 12 10 37 37 H 1.09001 * 109.47435 * 270.12432 * 16 15 14 38 38 H 1.09004 * 109.47143 * 30.12608 * 16 15 14 39 39 H 1.09002 * 109.46930 * 150.12434 * 16 15 14 40 40 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1661 2.1452 0.2577 9 6 5.8849 4.4378 -0.0347 10 7 5.1309 5.5788 -0.2302 11 1 4.1657 5.6245 -0.3148 12 6 5.9879 6.6141 -0.2810 13 6 5.6031 8.0573 -0.4809 14 7 7.2089 6.1689 -0.1280 15 6 7.1877 4.8454 0.0307 16 6 8.3866 3.9570 0.2415 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 0.8912 3.3339 -3.5651 22 14 -1.6337 4.0915 -2.7099 23 1 -1.7782 5.1545 -1.6831 24 1 -1.7766 4.6867 -4.0628 25 1 -2.6855 3.0627 -2.5086 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 5.4271 8.5241 0.4882 35 1 6.4095 8.5804 -0.9950 36 1 4.6945 8.1114 -1.0806 37 1 8.7644 3.6212 -0.7243 38 1 9.1651 4.5147 0.7622 39 1 8.0976 3.0924 0.8391 40 1 2.2720 2.1232 -1.9978 41 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715083681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:34 Heat of formation + Delta-G solvation = -9.548060 kcal Electronic energy + Delta-G solvation = -22106.645312 eV Core-core repulsion = 18828.168297 eV Total energy + Delta-G solvation = -3278.477015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -43.30790 -40.44904 -38.28170 -35.49190 -34.43507 -34.04403 -33.09982 -31.51628 -30.07373 -29.71100 -27.42275 -25.57668 -24.19784 -22.66024 -21.87330 -21.67066 -20.80580 -19.56621 -19.01467 -17.20540 -17.01728 -16.87121 -16.73760 -16.01855 -15.51448 -15.39161 -14.99220 -14.78681 -14.56844 -14.20105 -14.05169 -13.96750 -13.75501 -13.30541 -13.24185 -13.04618 -12.98208 -12.80399 -12.75652 -12.39368 -12.15520 -11.89947 -11.65185 -11.55242 -11.34216 -11.04994 -10.99736 -10.85127 -10.18815 -9.38682 -9.00113 -7.89190 -5.16796 0.21650 1.49395 1.51961 1.56665 1.72374 1.84966 2.15678 2.24187 2.58420 3.30330 3.44507 3.76819 3.86083 3.91619 4.01489 4.13716 4.35526 4.46480 4.53801 4.55765 4.69028 4.72507 4.75907 4.82209 4.86187 4.97377 5.04846 5.07671 5.09627 5.14323 5.20401 5.40278 5.54517 5.56289 5.59989 5.71251 6.23329 6.30242 6.43357 6.86707 7.06857 7.38567 8.09660 8.35084 9.33144 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.005178 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.179725 B = 5405.880702 C = 6924.237000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.060 0.940 5 C 0.123 3.877 6 N -0.707 5.707 7 C 0.591 3.409 8 O -0.561 6.561 9 C -0.112 4.112 10 N -0.543 5.543 11 H 0.433 0.567 12 C 0.248 3.752 13 C -0.073 4.073 14 N -0.524 5.524 15 C 0.080 3.920 16 C -0.071 4.071 17 N -0.727 5.727 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.968 5.968 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.305 1.305 25 H -0.285 1.285 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.372 0.628 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 4.754 9.475 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.379 3.621 8 O -0.441 6.441 9 C -0.228 4.228 10 N -0.149 5.149 11 H 0.274 0.726 12 C -0.017 4.017 13 C -0.131 4.131 14 N -0.246 5.246 15 C -0.055 4.055 16 C -0.128 4.128 17 N -0.368 5.368 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.789 3.211 23 H -0.202 1.202 24 H -0.232 1.232 25 H -0.212 1.212 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.241 0.759 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.203 0.797 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.701 4.592 9.661 13.181 hybrid contribution -2.297 0.106 -1.043 2.525 sum 5.404 4.699 8.618 11.205 Atomic orbital electron populations 1.21694 0.95949 1.00592 1.01779 1.21987 0.96629 0.97278 1.01134 1.20725 0.90703 0.93422 0.89568 0.92179 1.21648 0.94497 0.82080 1.01894 1.45811 1.06423 1.11029 1.72467 1.16976 0.82426 0.86188 0.76543 1.90752 1.56450 1.44811 1.52067 1.20829 0.93216 0.87545 1.21166 1.43226 1.11215 1.06083 1.54342 0.72622 1.24254 0.84560 0.93695 0.99155 1.20539 1.04069 0.83333 1.05129 1.70099 1.21661 1.09903 1.22913 1.21407 0.93513 0.91196 0.99352 1.20251 0.92637 0.97022 1.02902 1.42579 1.15787 1.66151 1.12288 1.19457 0.92559 1.25276 0.97640 0.90178 1.25347 1.00814 1.03444 0.96607 1.69803 1.36890 1.50799 1.04383 0.85435 0.81076 0.78542 0.76022 1.20239 1.23191 1.21162 0.93127 0.93325 0.92927 0.93606 0.90559 0.89712 0.92746 0.75934 0.87573 0.87958 0.88571 0.90630 0.89790 0.90237 0.79653 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.18 71.98 0.66 -3.96 16 2 C -0.13 -4.03 5.61 30.59 0.17 -3.86 16 3 C 0.16 5.55 2.59 44.99 0.12 5.67 16 4 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 5 C 0.12 3.88 5.23 86.38 0.45 4.34 16 6 N -0.71 -22.66 5.38 -466.98 -2.51 -25.17 16 7 C 0.59 20.22 7.79 86.47 0.67 20.89 16 8 O -0.56 -21.46 14.82 -4.29 -0.06 -21.52 16 9 C -0.11 -3.53 7.08 40.01 0.28 -3.25 16 10 N -0.54 -14.04 6.07 -176.11 -1.07 -15.11 16 11 H 0.43 9.58 8.32 -92.71 -0.77 8.81 16 12 C 0.25 6.09 8.12 138.19 1.12 7.22 16 13 C -0.07 -1.05 10.51 71.23 0.75 -0.30 16 14 N -0.52 -15.65 11.20 -175.57 -1.97 -17.62 16 15 C 0.08 2.53 7.15 41.96 0.30 2.83 16 16 C -0.07 -1.93 9.88 71.24 0.70 -1.22 16 17 N -0.73 -31.37 4.51 -322.93 -1.46 -32.82 16 18 C -0.22 -10.41 7.75 84.04 0.65 -9.76 16 19 H 0.08 3.68 7.32 -2.91 -0.02 3.66 16 20 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 21 N -0.97 -54.80 13.06 21.65 0.28 -54.51 16 22 Si 0.96 42.61 29.55 68.60 2.03 44.63 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.93 5.99 -2.39 -0.01 1.91 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.40 12.79 7.38 -92.71 -0.68 12.10 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.08 2.31 6.49 -2.39 -0.02 2.29 16 40 H 0.37 18.12 7.80 -92.71 -0.72 17.39 16 41 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -63.97 341.55 0.48 -63.49 By element: Atomic # 1 Polarization: 44.32 SS G_CDS: -1.11 Total: 43.21 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.35 Total: 15.43 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -6.72 Total: -145.24 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.97 0.48 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.940 kcal (2) G-P(sol) polarization free energy of solvation -63.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.85 seconds