Wall clock time and date at job start Tue Mar 31 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 C 1.36886 * 126.39840 * 89.99452 * 11 10 8 13 13 C 1.34670 * 106.81837 * 180.02562 * 12 11 10 14 14 N 1.34128 * 108.01978 * 0.02562 * 13 12 11 15 15 C 1.30503 * 109.25810 * 359.71951 * 14 13 12 16 16 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 17 17 C 1.36938 * 120.00226 * 275.00057 * 16 4 2 18 18 H 1.08003 * 119.99566 * 359.97438 * 17 16 4 19 19 C 1.38807 * 120.00578 * 180.02562 * 17 16 4 20 20 N 1.31630 * 119.99516 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00700 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47139 * 89.99661 * 21 19 17 23 23 H 1.48497 * 109.47830 * 210.00357 * 21 19 17 24 24 H 1.48509 * 109.46944 * 330.00365 * 21 19 17 25 25 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 26 26 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 27 27 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 29 29 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 30 30 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 32 32 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 33 33 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 34 34 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 35 35 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 36 36 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 37 37 H 1.08002 * 126.59064 * 359.97284 * 12 11 10 38 38 H 1.07999 * 125.98980 * 180.02562 * 13 12 11 39 39 H 1.07998 * 125.65186 * 180.29452 * 15 14 13 40 40 H 0.96996 * 119.99960 * 95.00040 * 16 4 2 41 41 H 0.97001 * 119.99721 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 7 1.7755 -6.2673 3.8310 12 6 2.5434 -7.2978 3.3597 13 6 1.8098 -8.4200 3.4860 14 7 0.6259 -8.0839 4.0195 15 6 0.6003 -6.7968 4.2340 16 7 1.4559 -0.1036 2.4424 17 6 2.0440 1.0003 2.9997 18 1 2.9389 1.4154 2.5599 19 6 1.4909 1.5853 4.1305 20 7 0.4006 1.0790 4.6668 21 14 2.2936 3.0907 4.8912 22 1 1.7223 4.3180 4.2807 23 1 2.0396 3.1012 6.3542 24 1 3.7572 3.0497 4.6432 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.1410 -2.6764 0.3508 33 1 0.5565 -2.2706 1.0528 34 1 2.4584 -2.3550 3.1388 35 1 3.2378 -4.7763 4.0241 36 1 1.6538 -4.3770 4.7312 37 1 3.5449 -7.2247 2.9620 38 1 2.1202 -9.4160 3.2068 39 1 -0.2248 -6.2461 4.6609 40 1 0.6524 -0.4766 2.8376 41 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715511214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:17 Heat of formation + Delta-G solvation = 33.923475 kcal Electronic energy + Delta-G solvation = -22054.183138 eV Core-core repulsion = 18777.591191 eV Total energy + Delta-G solvation = -3276.591948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.02037 -39.50162 -37.42222 -34.07299 -33.92796 -33.00712 -30.39113 -29.49868 -28.79967 -27.08878 -26.37394 -23.81266 -22.37921 -21.30445 -21.19527 -20.35093 -18.93232 -17.76326 -17.37259 -17.07965 -15.64955 -15.54598 -14.99864 -14.69798 -14.34222 -14.17027 -13.87380 -13.65274 -13.51046 -13.26516 -13.15987 -13.03851 -12.51912 -12.31606 -11.91099 -11.38865 -11.10195 -11.03313 -10.90895 -10.65726 -10.37235 -10.27274 -10.21846 -10.01626 -9.96511 -9.57325 -9.40747 -9.03104 -8.82905 -8.46093 -7.13601 -5.92279 -3.21519 2.01800 2.59804 2.64634 3.23844 3.32009 3.38226 3.40287 3.44609 4.44831 4.57419 4.71841 4.77051 4.89266 4.91634 5.25881 5.32986 5.41952 5.44449 5.64805 5.69647 5.74355 5.77587 5.99275 6.12981 6.24850 6.26813 6.31757 6.43700 6.54213 6.59382 6.72832 6.74640 6.78408 6.99188 7.14004 7.21560 7.57012 7.66221 8.10874 8.24739 8.28113 9.37497 9.91105 10.27374 11.29318 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.004161 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.410104 B = 6727.299141 C = 7711.891187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.054 0.946 6 C 0.113 3.887 7 N -0.705 5.705 8 C 0.492 3.508 9 O -0.536 6.536 10 C 0.084 3.916 11 N -0.442 5.442 12 C -0.048 4.048 13 C -0.033 4.033 14 N -0.498 5.498 15 C 0.195 3.805 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.203 0.797 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -8.982 -3.072 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.358 5.358 8 C 0.275 3.725 9 O -0.413 6.413 10 C -0.043 4.043 11 N -0.124 5.124 12 C -0.180 4.180 13 C -0.181 4.181 14 N -0.216 5.216 15 C -0.088 4.088 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.219 0.781 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.719 -9.688 -3.458 11.318 hybrid contribution 0.982 1.792 0.598 2.129 sum 5.701 -7.896 -2.861 10.151 Atomic orbital electron populations 1.21772 0.95640 1.00604 1.01783 1.21615 0.96222 0.97201 0.97873 1.21843 0.99545 0.96337 1.02199 1.20549 0.96900 0.88240 0.88567 0.92824 1.21776 1.00729 0.93536 0.85072 1.45920 1.60592 1.08824 1.20419 1.20610 0.80128 0.82935 0.88832 1.90763 1.42182 1.64864 1.43462 1.21730 1.04154 0.79732 0.98645 1.45014 1.14347 1.06548 1.46519 1.22648 0.99675 0.87699 1.08019 1.22211 0.91449 0.98546 1.05878 1.70275 1.21450 1.11513 1.18394 1.24976 0.89818 0.90555 1.03446 1.42426 1.31914 1.33217 1.28418 1.19192 1.07150 1.03980 1.06634 0.90921 1.24710 0.97763 0.99442 0.98613 1.69655 1.21919 1.42239 1.23878 0.86279 0.78620 0.83269 0.78516 1.21746 1.21866 1.20799 0.90953 0.94353 0.93848 0.93267 0.89562 0.94138 0.94790 0.91891 0.91281 0.75132 0.86148 0.85505 0.81228 0.81566 0.78067 0.78058 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.74 37.16 0.32 -1.99 16 2 C -0.11 -1.72 2.74 -90.61 -0.25 -1.97 16 3 C -0.14 -2.38 8.46 37.16 0.31 -2.07 16 4 C 0.17 2.81 2.29 -67.93 -0.16 2.65 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C 0.11 1.74 5.10 -4.04 -0.02 1.72 16 7 N -0.71 -9.92 5.39 -60.30 -0.32 -10.24 16 8 C 0.49 6.94 7.90 -10.98 -0.09 6.85 16 9 O -0.54 -9.79 16.43 5.55 0.09 -9.70 16 10 C 0.08 0.86 6.63 -5.19 -0.03 0.83 16 11 N -0.44 -5.48 2.24 -119.86 -0.27 -5.75 16 12 C -0.05 -0.57 11.58 -16.56 -0.19 -0.77 16 13 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 14 N -0.50 -7.60 11.25 -14.66 -0.16 -7.76 16 15 C 0.19 2.63 12.56 -90.37 -1.14 1.49 16 16 N -0.72 -14.74 3.53 -53.43 -0.19 -14.93 16 17 C -0.24 -5.60 7.75 -15.06 -0.12 -5.72 16 18 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -25.13 13.06 55.49 0.72 -24.41 16 21 Si 0.90 20.45 29.55 -169.99 -5.02 15.42 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.07 1.40 7.47 -51.93 -0.39 1.01 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.68 6.46 -51.93 -0.34 0.34 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.71 5.99 -51.93 -0.31 1.40 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 34 H 0.41 5.64 8.14 -40.82 -0.33 5.30 16 35 H 0.12 0.90 8.14 -51.92 -0.42 0.47 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.20 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.39 8.75 7.80 -40.82 -0.32 8.43 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -30.68 340.98 -7.86 -38.53 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.18 Total: 13.63 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.66 Total: 0.07 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.22 Total: -63.10 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.68 -7.86 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715511214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.457 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds