Wall clock time and date at job start Tue Mar 31 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 C 1.36886 * 126.39840 * 89.99452 * 11 10 8 13 13 C 1.34670 * 106.81837 * 180.02562 * 12 11 10 14 14 N 1.34128 * 108.01978 * 0.02562 * 13 12 11 15 15 C 1.30503 * 109.25810 * 359.71951 * 14 13 12 16 16 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 17 17 C 1.36938 * 120.00226 * 275.00057 * 16 4 2 18 18 H 1.08003 * 119.99566 * 359.97438 * 17 16 4 19 19 C 1.38807 * 120.00578 * 180.02562 * 17 16 4 20 20 N 1.31630 * 119.99516 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00700 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47139 * 89.99661 * 21 19 17 23 23 H 1.48497 * 109.47830 * 210.00357 * 21 19 17 24 24 H 1.48509 * 109.46944 * 330.00365 * 21 19 17 25 25 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 26 26 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 27 27 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 29 29 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 30 30 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 32 32 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 33 33 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 34 34 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 35 35 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 36 36 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 37 37 H 1.08002 * 126.59064 * 359.97284 * 12 11 10 38 38 H 1.07999 * 125.98980 * 180.02562 * 13 12 11 39 39 H 1.07998 * 125.65186 * 180.29452 * 15 14 13 40 40 H 0.96996 * 119.99960 * 95.00040 * 16 4 2 41 41 H 0.97001 * 119.99721 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 7 1.7755 -6.2673 3.8310 12 6 2.5434 -7.2978 3.3597 13 6 1.8098 -8.4200 3.4860 14 7 0.6259 -8.0839 4.0195 15 6 0.6003 -6.7968 4.2340 16 7 1.4559 -0.1036 2.4424 17 6 2.0440 1.0003 2.9997 18 1 2.9389 1.4154 2.5599 19 6 1.4909 1.5853 4.1305 20 7 0.4006 1.0790 4.6668 21 14 2.2936 3.0907 4.8912 22 1 1.7223 4.3180 4.2807 23 1 2.0396 3.1012 6.3542 24 1 3.7572 3.0497 4.6432 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.1410 -2.6764 0.3508 33 1 0.5565 -2.2706 1.0528 34 1 2.4584 -2.3550 3.1388 35 1 3.2378 -4.7763 4.0241 36 1 1.6538 -4.3770 4.7312 37 1 3.5449 -7.2247 2.9620 38 1 2.1202 -9.4160 3.2068 39 1 -0.2248 -6.2461 4.6609 40 1 0.6524 -0.4766 2.8376 41 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715511214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:10 Heat of formation + Delta-G solvation = 14.986776 kcal Electronic energy + Delta-G solvation = -22055.004295 eV Core-core repulsion = 18777.591191 eV Total energy + Delta-G solvation = -3277.413105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 6.76 seconds Orbital eigenvalues (eV) -42.96851 -40.68811 -38.82295 -35.34391 -34.91263 -34.70960 -31.98746 -30.50671 -30.03952 -28.25724 -27.71824 -25.51022 -23.72323 -22.27147 -22.23062 -21.44342 -20.27858 -19.27145 -18.55930 -18.25376 -16.89784 -16.75164 -16.36595 -15.90992 -15.83076 -15.22855 -15.08421 -14.93358 -14.76789 -14.62369 -14.34226 -14.06584 -13.81593 -13.55833 -13.13376 -12.89430 -12.77189 -12.69729 -12.41932 -12.13932 -11.92898 -11.90960 -11.46345 -11.35240 -11.16989 -10.97643 -10.84000 -10.44987 -10.04492 -9.40659 -8.91444 -7.84387 -5.09862 1.05960 1.51023 1.51558 1.54995 1.59981 1.75250 2.24875 2.39611 2.62656 3.49646 3.69523 3.82066 3.88493 3.92316 3.95895 4.03655 4.20160 4.28496 4.35810 4.44688 4.59611 4.68386 4.76569 4.78293 4.95326 4.98900 5.11800 5.22428 5.29484 5.31985 5.34202 5.51133 5.59786 5.66186 5.81130 5.84726 6.19739 6.36107 6.54544 7.14016 7.17048 7.45358 8.16655 8.41936 9.38126 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.004161 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.410104 B = 6727.299141 C = 7711.891187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.171 3.829 5 H 0.061 0.939 6 C 0.122 3.878 7 N -0.701 5.701 8 C 0.493 3.507 9 O -0.580 6.580 10 C 0.090 3.910 11 N -0.444 5.444 12 C -0.045 4.045 13 C -0.058 4.058 14 N -0.535 5.535 15 C 0.178 3.822 16 N -0.719 5.719 17 C -0.211 4.211 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.952 3.048 22 H -0.300 1.300 23 H -0.304 1.304 24 H -0.269 1.269 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.416 0.584 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.200 0.800 38 H 0.184 0.816 39 H 0.219 0.781 40 H 0.374 0.626 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.538 -9.132 -3.976 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.196 4.196 4 C 0.062 3.938 5 H 0.079 0.921 6 C -0.003 4.003 7 N -0.353 5.353 8 C 0.279 3.721 9 O -0.460 6.460 10 C -0.036 4.036 11 N -0.126 5.126 12 C -0.178 4.178 13 C -0.205 4.205 14 N -0.254 5.254 15 C -0.105 4.105 16 N -0.360 5.360 17 C -0.343 4.343 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.616 5.616 21 Si 0.784 3.216 22 H -0.228 1.228 23 H -0.232 1.232 24 H -0.194 1.194 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.253 0.747 35 H 0.175 0.825 36 H 0.166 0.834 37 H 0.217 0.783 38 H 0.202 0.798 39 H 0.235 0.765 40 H 0.206 0.794 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.712 -9.830 -4.390 12.687 hybrid contribution 0.408 1.812 0.745 2.001 sum 7.119 -8.018 -3.646 11.325 Atomic orbital electron populations 1.21685 0.96068 1.00628 1.00748 1.21600 0.95775 0.96984 0.98393 1.21770 1.00107 0.96442 1.01239 1.20671 0.96898 0.88896 0.87365 0.92136 1.21596 0.99842 0.92647 0.86203 1.45872 1.60355 1.09028 1.20059 1.21206 0.78874 0.82506 0.89521 1.90750 1.44202 1.65697 1.45367 1.21918 1.06536 0.78330 0.96805 1.45163 1.14039 1.07352 1.46084 1.23169 1.00599 0.87199 1.06800 1.22671 0.91279 1.00066 1.06436 1.70232 1.22826 1.12714 1.19623 1.25370 0.90801 0.90548 1.03743 1.42485 1.31400 1.32617 1.29460 1.19453 1.06187 1.03486 1.05195 0.90336 1.25237 0.98738 1.01905 1.00042 1.69783 1.23703 1.43698 1.24440 0.85454 0.78501 0.80707 0.76950 1.22800 1.23159 1.19441 0.94430 0.92865 0.93338 0.90503 0.93076 0.93160 0.93192 0.90710 0.92909 0.74688 0.82519 0.83434 0.78291 0.79847 0.76500 0.79372 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.74 71.98 0.63 -3.60 16 2 C -0.11 -3.15 2.74 -10.79 -0.03 -3.18 16 3 C -0.14 -4.32 8.46 71.98 0.61 -3.72 16 4 C 0.17 5.36 2.29 44.99 0.10 5.47 16 5 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 6 C 0.12 3.52 5.10 86.38 0.44 3.96 16 7 N -0.70 -18.36 5.39 -463.07 -2.49 -20.85 16 8 C 0.49 12.97 7.90 87.66 0.69 13.66 16 9 O -0.58 -20.55 16.43 -3.04 -0.05 -20.60 16 10 C 0.09 1.59 6.63 85.63 0.57 2.16 16 11 N -0.44 -10.18 2.24 -533.13 -1.19 -11.37 16 12 C -0.04 -0.99 11.58 83.09 0.96 -0.03 16 13 C -0.06 -1.48 11.87 83.52 0.99 -0.49 16 14 N -0.54 -16.17 11.25 -200.31 -2.25 -18.43 16 15 C 0.18 4.68 12.56 180.26 2.26 6.94 16 16 N -0.72 -28.95 3.53 -322.94 -1.14 -30.09 16 17 C -0.21 -9.71 7.75 84.03 0.65 -9.06 16 18 H 0.08 3.50 7.32 -2.91 -0.02 3.48 16 19 C -0.07 -3.37 5.50 84.86 0.47 -2.90 16 20 N -0.96 -52.99 13.06 21.65 0.28 -52.70 16 21 Si 0.95 42.10 29.55 68.60 2.03 44.13 16 22 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H 0.04 1.44 7.47 -2.39 -0.02 1.42 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.46 6.46 -2.39 -0.02 1.44 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.72 6.34 -2.39 -0.02 1.71 16 34 H 0.42 10.46 8.14 -92.71 -0.75 9.70 16 35 H 0.16 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.20 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.22 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.37 16.98 7.80 -92.71 -0.72 16.25 16 41 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -66.79 340.98 3.09 -63.70 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.44 Total: 36.98 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 8.35 Total: 9.22 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -6.80 Total: -133.44 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -66.79 3.09 -63.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715511214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.690 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.76 seconds