Wall clock time and date at job start Tue Mar 31 2020 01:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46831 * 2 1 4 4 N 1.30449 * 125.99341 * 269.95831 * 3 2 1 5 5 N 1.39930 * 108.89532 * 179.78418 * 4 3 2 6 6 H 0.97009 * 125.75132 * 180.29969 * 5 4 3 7 7 C 1.34256 * 108.49763 * 0.43011 * 5 4 3 8 8 C 1.38045 * 107.41401 * 359.58113 * 7 5 4 9 9 C 1.47433 * 126.41520 * 180.28078 * 8 7 5 10 10 O 1.21605 * 119.99637 * 140.95477 * 9 8 7 11 11 N 1.34773 * 120.00163 * 320.95945 * 9 8 7 12 12 C 1.46500 * 119.99596 * 5.09791 * 11 9 8 13 13 C 1.46499 * 119.99777 * 185.10152 * 11 9 8 14 14 C 1.53004 * 109.46957 * 90.00004 * 13 11 9 15 15 N 1.46502 * 109.46844 * 179.97438 * 14 13 11 16 16 C 1.46497 * 120.00321 * 269.99857 * 15 14 13 17 17 C 1.36945 * 119.99824 * 89.99852 * 15 14 13 18 18 H 1.08001 * 119.99659 * 22.81148 * 17 15 14 19 19 C 1.38808 * 119.99804 * 202.80919 * 17 15 14 20 20 N 1.31623 * 119.99942 * 11.34418 * 19 17 15 21 21 Si 1.86801 * 120.00058 * 191.34067 * 19 17 15 22 22 H 1.48501 * 109.46668 * 60.00379 * 21 19 17 23 23 H 1.48497 * 109.47365 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46931 * 300.00391 * 21 19 17 25 25 H 1.09001 * 109.46598 * 299.99308 * 1 2 3 26 26 H 1.08994 * 109.46962 * 59.99551 * 1 2 3 27 27 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 240.00493 * 2 1 3 29 29 H 1.09004 * 109.47509 * 120.00331 * 2 1 3 30 30 H 1.07993 * 126.29614 * 179.85278 * 7 5 4 31 31 H 1.08998 * 109.47216 * 84.92895 * 12 11 9 32 32 H 1.09010 * 109.46508 * 204.92273 * 12 11 9 33 33 H 1.08999 * 109.47760 * 324.92080 * 12 11 9 34 34 H 1.09002 * 109.46686 * 209.99461 * 13 11 9 35 35 H 1.08997 * 109.47453 * 329.99406 * 13 11 9 36 36 H 1.08992 * 109.47069 * 299.99338 * 14 13 11 37 37 H 1.09002 * 109.47342 * 59.99891 * 14 13 11 38 38 H 1.08997 * 109.47117 * 95.02763 * 16 15 14 39 39 H 1.08997 * 109.47411 * 215.03088 * 16 15 14 40 40 H 1.09005 * 109.46886 * 335.03217 * 16 15 14 41 41 H 0.97007 * 119.99737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2885 2.1434 -1.0554 5 7 2.7293 3.4062 -0.6440 6 1 2.9825 4.1367 -1.2299 7 6 2.7454 3.4353 0.6981 8 6 2.3091 2.2036 1.1433 9 6 2.1596 1.7836 2.5486 10 8 1.2124 1.0969 2.8804 11 7 3.0724 2.1609 3.4655 12 6 4.1508 3.0790 3.0907 13 6 2.9863 1.6530 4.8369 14 6 3.7858 0.3534 4.9505 15 7 3.7001 -0.1543 6.3221 16 6 4.6928 0.2560 7.3184 17 6 2.6922 -1.0123 6.6729 18 1 2.1950 -1.5998 5.9152 19 6 2.3095 -1.1269 8.0023 20 7 2.7503 -0.2617 8.8909 21 14 1.1690 -2.5090 8.5302 22 1 1.8024 -3.8171 8.2251 23 1 0.9142 -2.4103 9.9898 24 1 -0.1165 -2.3979 7.7950 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0408 4.2703 1.3159 31 1 3.7973 4.1069 3.1710 32 1 5.0001 2.9336 3.7584 33 1 4.4575 2.8794 2.0639 34 1 3.3959 2.3928 5.5247 35 1 1.9433 1.4611 5.0886 36 1 3.3763 -0.3864 4.2628 37 1 4.8289 0.5452 4.6990 38 1 4.3092 1.1040 7.8856 39 1 4.8921 -0.5742 7.9960 40 1 5.6157 0.5434 6.8147 41 1 2.4825 -0.3416 9.8199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715523097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:44 Heat of formation + Delta-G solvation = 64.373694 kcal Electronic energy + Delta-G solvation = -22336.733520 eV Core-core repulsion = 19061.461993 eV Total energy + Delta-G solvation = -3275.271527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54881 -38.98950 -35.97686 -34.89075 -34.13033 -31.62735 -30.47148 -30.34809 -28.24689 -26.46022 -25.78968 -24.10150 -23.86259 -22.14799 -20.62207 -19.87913 -19.18474 -17.68445 -16.69702 -16.34101 -15.55390 -15.42895 -14.87667 -14.76427 -14.32595 -14.02915 -13.62103 -13.39865 -13.14275 -13.04328 -12.57561 -12.48132 -12.32380 -12.19372 -11.77768 -11.43785 -11.32092 -11.15570 -10.81064 -10.75572 -10.67599 -10.46558 -10.09560 -9.88100 -9.71736 -9.62999 -9.50521 -8.80539 -8.54331 -8.27074 -6.68024 -5.65435 -3.11135 1.49060 2.19970 2.55507 3.27138 3.47911 3.51043 3.53073 3.56152 4.39923 4.51902 4.59762 4.99195 5.06134 5.21973 5.38448 5.40635 5.47214 5.50095 5.52408 5.64010 5.68114 5.74729 5.91366 6.02003 6.14675 6.30967 6.33840 6.36050 6.45433 6.70622 6.76412 6.86136 6.94837 7.13310 7.41562 7.43336 7.76411 7.79534 7.91051 8.47391 8.61272 9.31865 9.93757 10.41741 11.39876 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004413 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.725984 B = 6342.774773 C = 7269.018320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.134 3.866 4 N -0.301 5.301 5 N -0.467 5.467 6 H 0.441 0.559 7 C 0.092 3.908 8 C -0.272 4.272 9 C 0.583 3.417 10 O -0.526 6.526 11 N -0.610 5.610 12 C 0.076 3.924 13 C 0.094 3.906 14 C 0.144 3.856 15 N -0.599 5.599 16 C 0.164 3.836 17 C -0.250 4.250 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.912 5.912 21 Si 0.905 3.095 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.186 0.814 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.043 0.957 40 H -0.004 1.004 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 9.828 -17.560 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.034 4.034 4 N -0.123 5.123 5 N -0.172 5.172 6 H 0.285 0.715 7 C -0.059 4.059 8 C -0.287 4.287 9 C 0.370 3.630 10 O -0.402 6.402 11 N -0.344 5.344 12 C -0.068 4.068 13 C -0.030 4.030 14 C 0.016 3.984 15 N -0.322 5.322 16 C 0.019 3.981 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.557 5.557 21 Si 0.735 3.265 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.835 9.472 -18.411 20.898 hybrid contribution -0.333 0.122 1.035 1.094 sum 2.501 9.594 -17.376 20.005 Atomic orbital electron populations 1.21663 0.93635 1.02215 1.02480 1.20022 0.96928 0.87906 1.03512 1.22444 0.95184 0.97096 0.88699 1.77109 1.22139 0.90635 1.22437 1.46068 1.52603 1.13139 1.05415 0.71458 1.23282 0.98008 0.99248 0.85391 1.20419 1.17407 0.95817 0.95027 1.17311 0.82128 0.80100 0.83422 1.90806 1.30596 1.38467 1.80342 1.47920 1.27643 1.46999 1.11799 1.21903 0.90896 0.92551 1.01405 1.22618 1.04138 0.97593 0.78617 1.21114 0.96098 0.93084 0.88113 1.43960 1.29950 1.52602 1.05708 1.20818 0.87162 0.99507 0.90608 1.19224 1.11571 1.14625 0.92575 0.91259 1.25018 0.99094 0.98509 0.96976 1.70052 1.48005 1.35547 1.02141 0.86318 0.80947 0.82012 0.77225 1.21089 1.21702 1.20788 0.91105 0.93181 0.91947 0.90564 0.89214 0.79706 0.93272 0.90761 0.91499 0.91535 0.89441 0.93560 0.94769 0.95219 0.93787 0.98597 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.04 -0.58 5.99 -27.88 -0.17 -0.75 16 3 C 0.13 1.84 6.51 -82.02 -0.53 1.30 16 4 N -0.30 -3.77 12.63 33.90 0.43 -3.34 16 5 N -0.47 -4.13 7.29 30.85 0.22 -3.90 16 6 H 0.44 2.13 8.96 -182.72 -1.64 0.50 16 7 C 0.09 0.87 9.75 -16.56 -0.16 0.71 16 8 C -0.27 -3.71 5.34 -105.06 -0.56 -4.27 16 9 C 0.58 9.89 7.35 -12.52 -0.09 9.80 16 10 O -0.53 -11.05 15.51 5.27 0.08 -10.97 16 11 N -0.61 -9.52 2.87 -182.84 -0.53 -10.05 16 12 C 0.08 0.80 9.06 59.85 0.54 1.34 16 13 C 0.09 1.84 5.75 -4.04 -0.02 1.82 16 14 C 0.14 3.09 6.03 -4.04 -0.02 3.06 16 15 N -0.60 -15.45 2.92 -181.12 -0.53 -15.98 16 16 C 0.16 4.04 9.01 59.85 0.54 4.58 16 17 C -0.25 -7.13 9.67 -15.06 -0.15 -7.28 16 18 H 0.07 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 20 N -0.91 -26.90 10.61 55.49 0.59 -26.31 16 21 Si 0.91 22.60 29.57 -169.99 -5.03 17.57 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 25 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.30 7.77 -51.93 -0.40 0.89 16 30 H 0.19 1.08 6.40 -52.49 -0.34 0.74 16 31 H 0.05 0.40 7.37 -51.93 -0.38 0.01 16 32 H 0.07 0.75 8.03 -51.92 -0.42 0.34 16 33 H 0.07 0.60 5.91 -51.93 -0.31 0.30 16 34 H 0.07 1.25 8.07 -51.93 -0.42 0.84 16 35 H 0.09 2.04 7.36 -51.93 -0.38 1.66 16 36 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 37 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 38 H 0.03 0.78 7.36 -51.93 -0.38 0.40 16 39 H 0.04 1.17 7.28 -51.93 -0.38 0.79 16 40 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -34.79 338.68 -7.49 -42.29 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -7.49 Total: -3.25 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.35 Total: 8.85 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.19 Total: -59.59 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.79 -7.49 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715523097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.660 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds