Wall clock time and date at job start Tue Mar 31 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46831 * 2 1 4 4 N 1.30449 * 125.99341 * 269.95831 * 3 2 1 5 5 N 1.39930 * 108.89532 * 179.78418 * 4 3 2 6 6 H 0.97009 * 125.75132 * 180.29969 * 5 4 3 7 7 C 1.34256 * 108.49763 * 0.43011 * 5 4 3 8 8 C 1.38045 * 107.41401 * 359.58113 * 7 5 4 9 9 C 1.47433 * 126.41520 * 180.28078 * 8 7 5 10 10 O 1.21605 * 119.99637 * 140.95477 * 9 8 7 11 11 N 1.34773 * 120.00163 * 320.95945 * 9 8 7 12 12 C 1.46500 * 119.99596 * 5.09791 * 11 9 8 13 13 C 1.46499 * 119.99777 * 185.10152 * 11 9 8 14 14 C 1.53004 * 109.46957 * 90.00004 * 13 11 9 15 15 N 1.46502 * 109.46844 * 179.97438 * 14 13 11 16 16 C 1.46497 * 120.00321 * 269.99857 * 15 14 13 17 17 C 1.36945 * 119.99824 * 89.99852 * 15 14 13 18 18 H 1.08001 * 119.99659 * 22.81148 * 17 15 14 19 19 C 1.38808 * 119.99804 * 202.80919 * 17 15 14 20 20 N 1.31623 * 119.99942 * 11.34418 * 19 17 15 21 21 Si 1.86801 * 120.00058 * 191.34067 * 19 17 15 22 22 H 1.48501 * 109.46668 * 60.00379 * 21 19 17 23 23 H 1.48497 * 109.47365 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46931 * 300.00391 * 21 19 17 25 25 H 1.09001 * 109.46598 * 299.99308 * 1 2 3 26 26 H 1.08994 * 109.46962 * 59.99551 * 1 2 3 27 27 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 240.00493 * 2 1 3 29 29 H 1.09004 * 109.47509 * 120.00331 * 2 1 3 30 30 H 1.07993 * 126.29614 * 179.85278 * 7 5 4 31 31 H 1.08998 * 109.47216 * 84.92895 * 12 11 9 32 32 H 1.09010 * 109.46508 * 204.92273 * 12 11 9 33 33 H 1.08999 * 109.47760 * 324.92080 * 12 11 9 34 34 H 1.09002 * 109.46686 * 209.99461 * 13 11 9 35 35 H 1.08997 * 109.47453 * 329.99406 * 13 11 9 36 36 H 1.08992 * 109.47069 * 299.99338 * 14 13 11 37 37 H 1.09002 * 109.47342 * 59.99891 * 14 13 11 38 38 H 1.08997 * 109.47117 * 95.02763 * 16 15 14 39 39 H 1.08997 * 109.47411 * 215.03088 * 16 15 14 40 40 H 1.09005 * 109.46886 * 335.03217 * 16 15 14 41 41 H 0.97007 * 119.99737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2885 2.1434 -1.0554 5 7 2.7293 3.4062 -0.6440 6 1 2.9825 4.1367 -1.2299 7 6 2.7454 3.4353 0.6981 8 6 2.3091 2.2036 1.1433 9 6 2.1596 1.7836 2.5486 10 8 1.2124 1.0969 2.8804 11 7 3.0724 2.1609 3.4655 12 6 4.1508 3.0790 3.0907 13 6 2.9863 1.6530 4.8369 14 6 3.7858 0.3534 4.9505 15 7 3.7001 -0.1543 6.3221 16 6 4.6928 0.2560 7.3184 17 6 2.6922 -1.0123 6.6729 18 1 2.1950 -1.5998 5.9152 19 6 2.3095 -1.1269 8.0023 20 7 2.7503 -0.2617 8.8909 21 14 1.1690 -2.5090 8.5302 22 1 1.8024 -3.8171 8.2251 23 1 0.9142 -2.4103 9.9898 24 1 -0.1165 -2.3979 7.7950 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0408 4.2703 1.3159 31 1 3.7973 4.1069 3.1710 32 1 5.0001 2.9336 3.7584 33 1 4.4575 2.8794 2.0639 34 1 3.3959 2.3928 5.5247 35 1 1.9433 1.4611 5.0886 36 1 3.3763 -0.3864 4.2628 37 1 4.8289 0.5452 4.6990 38 1 4.3092 1.1040 7.8856 39 1 4.8921 -0.5742 7.9960 40 1 5.6157 0.5434 6.8147 41 1 2.4825 -0.3416 9.8199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715523097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:43 Heat of formation + Delta-G solvation = 39.961849 kcal Electronic energy + Delta-G solvation = -22337.792097 eV Core-core repulsion = 19061.461993 eV Total energy + Delta-G solvation = -3276.330104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.47517 -40.27697 -37.74486 -36.38180 -35.14876 -33.52306 -31.77672 -31.28816 -29.72023 -27.89499 -27.55134 -25.55622 -25.02242 -23.38468 -22.27598 -21.07998 -20.17753 -18.82992 -18.64157 -17.56640 -17.03196 -16.74340 -16.33540 -15.83196 -15.59928 -15.44821 -15.08083 -14.91785 -14.67541 -14.21972 -14.07864 -13.84599 -13.58382 -13.35177 -13.10002 -12.94939 -12.74582 -12.71820 -12.43762 -12.40392 -12.19632 -12.06639 -11.98867 -11.69483 -11.55368 -10.85420 -10.66072 -10.51207 -9.79592 -9.62551 -8.73605 -7.83417 -5.31358 0.64986 1.13774 1.45470 1.47899 1.54366 1.78990 2.08192 2.36852 2.53469 3.31016 3.45095 3.73432 3.79926 4.00056 4.13922 4.28158 4.39262 4.42374 4.48522 4.52299 4.54494 4.66136 4.67163 4.78921 4.86745 4.95370 5.01363 5.04340 5.12230 5.23408 5.31671 5.35872 5.41785 5.60863 5.69701 5.75597 6.30587 6.33902 6.50630 6.63146 7.16776 7.35081 7.87149 8.27959 9.19301 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004413 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.725984 B = 6342.774773 C = 7269.018320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 C 0.119 3.881 4 N -0.317 5.317 5 N -0.445 5.445 6 H 0.462 0.538 7 C 0.131 3.869 8 C -0.310 4.310 9 C 0.580 3.420 10 O -0.583 6.583 11 N -0.608 5.608 12 C 0.067 3.933 13 C 0.115 3.885 14 C 0.149 3.851 15 N -0.617 5.617 16 C 0.177 3.823 17 C -0.264 4.264 18 H 0.057 0.943 19 C -0.046 4.046 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.283 1.283 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.231 0.769 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.016 0.984 40 H 0.036 0.964 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 11.785 -19.344 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.049 4.049 4 N -0.140 5.140 5 N -0.152 5.152 6 H 0.311 0.689 7 C -0.022 4.022 8 C -0.325 4.325 9 C 0.369 3.631 10 O -0.463 6.463 11 N -0.341 5.341 12 C -0.074 4.074 13 C -0.011 4.011 14 C 0.022 3.978 15 N -0.340 5.340 16 C 0.033 3.967 17 C -0.395 4.395 18 H 0.075 0.925 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.209 1.209 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.247 0.753 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.303 11.478 -20.270 23.688 hybrid contribution -0.709 -0.391 1.470 1.678 sum 3.593 11.086 -18.800 22.119 Atomic orbital electron populations 1.21582 0.93636 1.02615 1.01421 1.19976 0.96958 0.88439 1.03090 1.22472 0.95769 0.97390 0.89227 1.77058 1.22792 0.91968 1.22160 1.46097 1.50714 1.12581 1.05762 0.68917 1.23754 0.94545 0.98383 0.85566 1.20196 1.21226 0.98102 0.92950 1.17825 0.81341 0.79105 0.84789 1.90774 1.33009 1.41101 1.81415 1.47879 1.28822 1.47494 1.09887 1.22282 0.89500 0.92997 1.02657 1.21971 1.00713 0.97072 0.81324 1.21137 0.97926 0.93228 0.85499 1.44154 1.29666 1.52968 1.07252 1.20604 0.88338 0.97514 0.90269 1.19382 1.12133 1.15294 0.92641 0.92495 1.25694 1.00758 1.00698 0.96972 1.70192 1.49068 1.36772 1.02057 0.85398 0.79023 0.79661 0.76730 1.20279 1.21285 1.20892 0.94072 0.92058 0.90898 0.88816 0.91634 0.75324 0.89818 0.90001 0.89516 0.90489 0.94230 0.95767 0.91658 0.97250 0.96511 0.94540 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.89 71.98 0.71 -2.81 16 2 C -0.05 -1.21 5.99 29.85 0.18 -1.03 16 3 C 0.12 3.16 6.51 43.52 0.28 3.45 16 4 N -0.32 -7.21 12.63 -46.67 -0.59 -7.80 16 5 N -0.44 -6.08 7.29 -56.32 -0.41 -6.49 16 6 H 0.46 2.28 8.96 -213.42 -1.91 0.37 16 7 C 0.13 1.92 9.75 84.28 0.82 2.74 16 8 C -0.31 -8.00 5.34 -20.15 -0.11 -8.10 16 9 C 0.58 19.76 7.35 86.67 0.64 20.40 16 10 O -0.58 -25.98 15.51 -4.05 -0.06 -26.05 16 11 N -0.61 -18.29 2.87 -850.65 -2.44 -20.74 16 12 C 0.07 1.13 9.06 127.77 1.16 2.29 16 13 C 0.11 4.50 5.75 86.38 0.50 5.00 16 14 C 0.15 6.41 6.03 86.38 0.52 6.93 16 15 N -0.62 -32.24 2.92 -726.94 -2.13 -34.37 16 16 C 0.18 8.74 9.01 127.77 1.15 9.89 16 17 C -0.26 -15.49 9.67 84.03 0.81 -14.68 16 18 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 19 C -0.05 -2.68 5.13 84.86 0.44 -2.25 16 20 N -0.93 -56.17 10.61 21.65 0.23 -55.95 16 21 Si 0.96 47.39 29.57 68.60 2.03 49.42 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 25 H 0.04 1.31 7.65 -2.39 -0.02 1.29 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.03 7.77 -2.39 -0.02 2.02 16 30 H 0.23 1.21 6.40 -2.91 -0.02 1.19 16 31 H 0.08 0.89 7.37 -2.39 -0.02 0.87 16 32 H 0.08 1.31 8.03 -2.38 -0.02 1.29 16 33 H 0.09 1.15 5.91 -2.39 -0.01 1.14 16 34 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 35 H 0.04 1.93 7.36 -2.39 -0.02 1.92 16 36 H 0.02 1.13 8.03 -2.39 -0.02 1.11 16 37 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 38 H 0.01 0.49 7.36 -2.39 -0.02 0.47 16 39 H 0.02 0.88 7.28 -2.39 -0.02 0.86 16 40 H 0.04 1.47 7.84 -2.38 -0.02 1.45 16 41 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -80.25 338.68 2.85 -77.41 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -0.88 Total: 2.72 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.10 Total: 21.84 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.34 Total: -125.34 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.25 2.85 -77.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715523097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.368 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds