Wall clock time and date at job start Tue Mar 31 2020 01:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47207 * 2 1 4 4 C 1.35376 * 126.38169 * 85.32381 * 3 2 1 5 5 C 1.41500 * 105.50122 * 180.08894 * 4 3 2 6 6 C 1.47712 * 126.51820 * 179.90276 * 5 4 3 7 7 O 1.21563 * 119.99789 * 359.71231 * 6 5 4 8 8 N 1.34769 * 119.99779 * 179.71298 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99412 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00351 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47308 * 89.99659 * 18 16 14 20 20 H 1.48499 * 109.47402 * 209.99959 * 18 16 14 21 21 H 1.48506 * 109.47175 * 330.00158 * 18 16 14 22 22 N 1.31813 * 106.96462 * 359.63781 * 5 4 3 23 23 N 1.28466 * 110.07177 * 0.23128 * 22 5 4 24 24 C 1.46504 * 124.88544 * 180.02562 * 23 22 5 25 25 H 1.09005 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46934 * 299.99223 * 1 2 3 27 27 H 1.08995 * 109.47290 * 59.99204 * 1 2 3 28 28 H 1.09005 * 109.46934 * 240.00776 * 2 1 3 29 29 H 1.08995 * 109.47290 * 120.00796 * 2 1 3 30 30 H 1.08001 * 127.24551 * 359.97438 * 4 3 2 31 31 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 34 34 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 35 35 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 36 36 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 37 37 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 38 38 H 0.97000 * 119.99644 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47410 * 89.96705 * 24 23 22 40 40 H 1.08997 * 109.46928 * 209.97253 * 24 23 22 41 41 H 1.09005 * 109.47145 * 329.97016 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2163 2.2075 1.0863 5 6 2.6938 3.4409 0.5834 6 6 3.0447 4.6367 1.3764 7 8 2.9274 4.6196 2.5862 8 7 3.4950 5.7466 0.7586 9 6 3.8437 6.9324 1.5452 10 1 3.1675 7.0157 2.3960 11 6 5.2831 6.8058 2.0481 12 6 3.7175 8.1805 0.6694 13 7 2.3725 8.2376 0.0914 14 6 2.0249 9.2744 -0.7329 15 1 2.7424 10.0498 -0.9573 16 6 0.7507 9.3281 -1.2809 17 7 0.4168 10.3244 -2.0737 18 14 -0.4901 7.9866 -0.8935 19 1 -1.2643 8.3629 0.3166 20 1 -1.4164 7.8222 -2.0424 21 1 0.2240 6.7082 -0.6464 22 7 2.7713 3.3181 -0.7267 23 7 2.3886 2.1446 -1.0829 24 6 2.3456 1.6609 -2.4651 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0348 1.9487 2.1190 31 1 3.5891 5.7601 -0.2067 32 1 5.5423 7.6878 2.6337 33 1 5.3731 5.9165 2.6721 34 1 5.9593 6.7224 1.1972 35 1 3.8901 9.0693 1.2763 36 1 4.4556 8.1386 -0.1316 37 1 1.7279 7.5414 0.2932 38 1 -0.4737 10.3622 -2.4563 39 1 3.3001 1.1995 -2.7185 40 1 1.5478 0.9254 -2.5679 41 1 2.1568 2.4980 -3.1373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716012199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:56 Heat of formation + Delta-G solvation = 46.921952 kcal Electronic energy + Delta-G solvation = -22045.097250 eV Core-core repulsion = 18769.068958 eV Total energy + Delta-G solvation = -3276.028291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.74512 -39.29212 -36.22730 -34.65965 -33.65854 -33.48077 -31.41246 -30.31810 -29.41163 -27.48836 -25.91713 -24.01199 -23.44419 -22.06378 -20.99788 -20.51217 -19.52222 -17.75399 -17.13414 -16.47683 -16.39982 -15.74290 -14.84927 -14.76991 -14.49145 -14.26098 -13.95087 -13.70205 -13.59243 -13.16055 -12.83727 -12.81487 -12.57111 -12.54906 -12.33414 -12.15601 -11.93054 -11.76578 -11.48563 -11.05314 -10.85071 -10.79122 -10.45022 -10.09517 -9.86062 -9.58359 -9.17235 -9.00191 -8.90343 -8.70812 -7.22500 -5.75795 -3.11041 1.64099 2.05974 2.36002 3.40486 3.44021 3.46351 3.48218 3.63864 4.22346 4.31042 4.60152 4.61726 4.78888 4.84253 4.92747 5.08512 5.14591 5.18114 5.27276 5.38703 5.45061 5.52697 5.56702 5.61193 5.64618 5.83055 5.89056 5.90032 5.99384 6.10880 6.36533 6.38018 6.44672 6.65169 6.67418 6.90352 7.71559 7.99500 8.00903 8.43019 8.49228 9.22496 9.95189 10.14934 11.42495 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005347 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.260178 B = 5235.810465 C = 6406.419958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.012 4.012 6 C 0.603 3.397 7 O -0.541 6.541 8 N -0.702 5.702 9 C 0.128 3.872 10 H 0.089 0.911 11 C -0.157 4.157 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.934 5.934 18 Si 0.880 3.120 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.276 1.276 22 N -0.255 5.255 23 N -0.281 5.281 24 C 0.084 3.916 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.410 0.590 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.363 0.637 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -23.161 2.201 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.205 4.205 5 C -0.172 4.172 6 C 0.387 3.613 7 O -0.417 6.417 8 N -0.353 5.353 9 C 0.024 3.976 10 H 0.107 0.893 11 C -0.216 4.216 12 C 0.022 3.978 13 N -0.402 5.402 14 C -0.374 4.374 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.582 5.582 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 N -0.091 5.091 23 N -0.070 5.070 24 C -0.056 4.056 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.178 0.822 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.196 0.804 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.657 -22.375 1.830 23.152 hybrid contribution -1.218 -1.257 0.242 1.767 sum 4.439 -23.632 2.073 24.134 Atomic orbital electron populations 1.21785 0.94054 1.02096 1.02832 1.20084 0.96419 0.88780 1.03719 1.21370 1.06386 0.96984 0.86920 1.21472 1.07094 0.92382 0.99540 1.21958 1.08554 0.96862 0.89859 1.16888 0.76756 0.81338 0.86293 1.90753 1.54800 1.82991 1.13174 1.45932 1.65225 1.12415 1.11679 1.21365 0.96526 0.84501 0.95203 0.89310 1.22090 0.95860 1.02315 1.01288 1.20968 0.88498 0.93663 0.94717 1.42720 1.10309 1.28826 1.58303 1.19060 0.97815 1.00818 1.19658 0.89074 1.24629 0.97184 0.97650 0.99384 1.69704 1.20348 1.31932 1.36180 0.86598 0.82123 0.82640 0.77554 1.21060 1.21798 1.20257 1.73605 1.18102 1.02390 1.14980 1.45314 1.45664 1.08212 1.07793 1.22163 1.03982 1.01718 0.77765 0.91771 0.91799 0.92717 0.90805 0.89167 0.82230 0.75423 0.91386 0.92313 0.92401 0.93837 0.94912 0.80369 0.93096 0.89727 0.88824 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.36 6.00 -27.88 -0.17 -0.53 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.49 10.73 -39.36 -0.42 -2.91 16 5 C -0.01 -0.20 7.13 -82.76 -0.59 -0.79 16 6 C 0.60 11.12 7.79 -12.39 -0.10 11.03 16 7 O -0.54 -11.01 16.59 5.31 0.09 -10.92 16 8 N -0.70 -12.40 4.51 -54.79 -0.25 -12.65 16 9 C 0.13 2.21 2.73 -67.93 -0.19 2.02 16 10 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 11 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 12 C 0.15 2.92 5.82 -4.04 -0.02 2.90 16 13 N -0.76 -18.52 5.24 -59.91 -0.31 -18.84 16 14 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 15 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 18 Si 0.88 23.19 27.74 -169.99 -4.71 18.47 16 19 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 21 H -0.28 -7.08 6.52 56.52 0.37 -6.71 16 22 N -0.26 -4.02 11.67 33.42 0.39 -3.63 16 23 N -0.28 -3.42 3.70 -63.85 -0.24 -3.66 16 24 C 0.08 0.61 10.89 59.85 0.65 1.26 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 7.42 -51.93 -0.39 -0.01 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.41 7.23 8.33 -40.82 -0.34 6.89 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.36 9.04 5.20 -40.82 -0.21 8.83 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.43 7.45 -51.93 -0.39 0.05 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -36.05 346.72 -6.29 -42.34 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.38 Total: 9.67 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.87 Total: 3.00 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 0.37 Total: -67.78 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.71 Total: 18.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.05 -6.29 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716012199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.262 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds