Wall clock time and date at job start Tue Mar 31 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47207 * 2 1 4 4 C 1.35376 * 126.38169 * 85.32381 * 3 2 1 5 5 C 1.41500 * 105.50122 * 180.08894 * 4 3 2 6 6 C 1.47712 * 126.51820 * 179.90276 * 5 4 3 7 7 O 1.21563 * 119.99789 * 359.71231 * 6 5 4 8 8 N 1.34769 * 119.99779 * 179.71298 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99412 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00351 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47308 * 89.99659 * 18 16 14 20 20 H 1.48499 * 109.47402 * 209.99959 * 18 16 14 21 21 H 1.48506 * 109.47175 * 330.00158 * 18 16 14 22 22 N 1.31813 * 106.96462 * 359.63781 * 5 4 3 23 23 N 1.28466 * 110.07177 * 0.23128 * 22 5 4 24 24 C 1.46504 * 124.88544 * 180.02562 * 23 22 5 25 25 H 1.09005 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46934 * 299.99223 * 1 2 3 27 27 H 1.08995 * 109.47290 * 59.99204 * 1 2 3 28 28 H 1.09005 * 109.46934 * 240.00776 * 2 1 3 29 29 H 1.08995 * 109.47290 * 120.00796 * 2 1 3 30 30 H 1.08001 * 127.24551 * 359.97438 * 4 3 2 31 31 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 34 34 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 35 35 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 36 36 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 37 37 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 38 38 H 0.97000 * 119.99644 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47410 * 89.96705 * 24 23 22 40 40 H 1.08997 * 109.46928 * 209.97253 * 24 23 22 41 41 H 1.09005 * 109.47145 * 329.97016 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2163 2.2075 1.0863 5 6 2.6938 3.4409 0.5834 6 6 3.0447 4.6367 1.3764 7 8 2.9274 4.6196 2.5862 8 7 3.4950 5.7466 0.7586 9 6 3.8437 6.9324 1.5452 10 1 3.1675 7.0157 2.3960 11 6 5.2831 6.8058 2.0481 12 6 3.7175 8.1805 0.6694 13 7 2.3725 8.2376 0.0914 14 6 2.0249 9.2744 -0.7329 15 1 2.7424 10.0498 -0.9573 16 6 0.7507 9.3281 -1.2809 17 7 0.4168 10.3244 -2.0737 18 14 -0.4901 7.9866 -0.8935 19 1 -1.2643 8.3629 0.3166 20 1 -1.4164 7.8222 -2.0424 21 1 0.2240 6.7082 -0.6464 22 7 2.7713 3.3181 -0.7267 23 7 2.3886 2.1446 -1.0829 24 6 2.3456 1.6609 -2.4651 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0348 1.9487 2.1190 31 1 3.5891 5.7601 -0.2067 32 1 5.5423 7.6878 2.6337 33 1 5.3731 5.9165 2.6721 34 1 5.9593 6.7224 1.1972 35 1 3.8901 9.0693 1.2763 36 1 4.4556 8.1386 -0.1316 37 1 1.7279 7.5414 0.2932 38 1 -0.4737 10.3622 -2.4563 39 1 3.3001 1.1995 -2.7185 40 1 1.5478 0.9254 -2.5679 41 1 2.1568 2.4980 -3.1373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716012199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:55 Heat of formation + Delta-G solvation = 20.496608 kcal Electronic energy + Delta-G solvation = -22046.243139 eV Core-core repulsion = 18769.068958 eV Total energy + Delta-G solvation = -3277.174180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73578 -40.69989 -37.83733 -35.59478 -35.33446 -34.37368 -33.32790 -31.86907 -30.28454 -28.35998 -27.65729 -24.88925 -24.44967 -23.95484 -22.18142 -21.82579 -20.72543 -19.76203 -18.20701 -17.66018 -17.34473 -17.11161 -16.71739 -15.91228 -15.85899 -15.49318 -15.17627 -14.88171 -14.86748 -14.33143 -14.19150 -13.92832 -13.76087 -13.72336 -13.45923 -13.26746 -13.19855 -12.95023 -12.65041 -12.52361 -12.26881 -12.07943 -11.93068 -11.79214 -11.72042 -11.29106 -11.05263 -10.31021 -10.00358 -9.96597 -9.35331 -8.07759 -5.39974 0.47952 1.07515 1.29957 1.31768 1.38172 1.53955 2.15135 2.33155 2.40867 3.24366 3.29272 3.53366 3.59151 3.83239 3.94942 4.14532 4.24075 4.31383 4.38046 4.40270 4.44860 4.51230 4.61876 4.67000 4.77127 4.78456 4.81976 4.90365 5.03713 5.06865 5.15802 5.27926 5.29784 5.36416 5.48773 5.72039 5.85659 6.16627 6.40155 6.86320 7.01873 7.11785 7.78122 7.95928 9.13729 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005347 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.260178 B = 5235.810465 C = 6406.419958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C 0.026 3.974 4 C -0.202 4.202 5 C -0.047 4.047 6 C 0.600 3.400 7 O -0.570 6.570 8 N -0.701 5.701 9 C 0.134 3.866 10 H 0.073 0.927 11 C -0.146 4.146 12 C 0.148 3.852 13 N -0.759 5.759 14 C -0.230 4.230 15 H 0.068 0.932 16 C -0.053 4.053 17 N -0.978 5.978 18 Si 0.945 3.055 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.268 1.268 22 N -0.280 5.280 23 N -0.276 5.276 24 C 0.070 3.930 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.163 0.837 31 H 0.410 0.590 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -26.129 1.922 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.099 4.099 4 C -0.230 4.230 5 C -0.205 4.205 6 C 0.385 3.615 7 O -0.448 6.448 8 N -0.352 5.352 9 C 0.030 3.970 10 H 0.091 0.909 11 C -0.205 4.205 12 C 0.022 3.978 13 N -0.405 5.405 14 C -0.361 4.361 15 H 0.086 0.914 16 C -0.245 4.245 17 N -0.629 5.629 18 Si 0.773 3.227 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.194 1.194 22 N -0.118 5.118 23 N -0.065 5.065 24 C -0.068 4.068 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.180 0.820 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.904 -25.357 1.558 26.082 hybrid contribution -1.206 -0.366 0.279 1.291 sum 4.698 -25.723 1.837 26.213 Atomic orbital electron populations 1.21780 0.93767 1.03326 1.01773 1.20295 0.96421 0.86036 1.05914 1.21968 1.03967 0.98268 0.85713 1.21684 1.08331 0.92206 1.00741 1.21860 1.10857 0.97159 0.90604 1.17192 0.76162 0.81923 0.86195 1.90716 1.56132 1.83641 1.14319 1.45953 1.65160 1.12430 1.11619 1.21300 0.98345 0.83383 0.93975 0.90872 1.22006 0.93569 1.03055 1.01836 1.21150 0.86141 0.95270 0.95242 1.42759 1.12254 1.27610 1.57885 1.19088 0.97141 1.00818 1.19021 0.91425 1.25300 0.99222 0.99951 1.00037 1.69846 1.20883 1.34099 1.38027 0.85567 0.79719 0.80247 0.77125 1.20996 1.21635 1.19381 1.73526 1.19295 1.04416 1.14524 1.45819 1.43815 1.07231 1.09646 1.22635 1.06645 1.02356 0.75159 0.89395 0.93496 0.93197 0.87818 0.87787 0.81986 0.75457 0.89432 0.92710 0.91146 0.92963 0.93853 0.80538 0.93252 0.87327 0.85590 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.05 -0.50 6.00 29.85 0.18 -0.32 16 3 C 0.03 0.53 6.17 41.41 0.26 0.79 16 4 C -0.20 -5.57 10.73 22.41 0.24 -5.33 16 5 C -0.05 -1.56 7.13 42.46 0.30 -1.26 16 6 C 0.60 22.37 7.79 86.75 0.68 23.05 16 7 O -0.57 -23.61 16.59 -3.92 -0.06 -23.67 16 8 N -0.70 -24.72 4.51 -445.54 -2.01 -26.73 16 9 C 0.13 4.54 2.73 44.99 0.12 4.66 16 10 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 11 C -0.15 -3.86 9.48 71.98 0.68 -3.17 16 12 C 0.15 5.67 5.82 86.38 0.50 6.18 16 13 N -0.76 -36.96 5.24 -343.45 -1.80 -38.76 16 14 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 15 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 16 C -0.05 -3.21 5.50 84.86 0.47 -2.74 16 17 N -0.98 -63.35 13.97 21.65 0.30 -63.05 16 18 Si 0.94 48.41 27.74 68.60 1.90 50.31 16 19 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 20 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.27 -13.22 6.52 99.48 0.65 -12.57 16 22 N -0.28 -8.64 11.67 -48.17 -0.56 -9.20 16 23 N -0.28 -6.16 3.70 -355.91 -1.32 -7.48 16 24 C 0.07 0.80 10.89 127.77 1.39 2.19 16 25 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.52 7.42 -2.38 -0.02 0.50 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.16 4.18 8.06 -2.91 -0.02 4.15 16 31 H 0.41 14.41 8.33 -92.71 -0.77 13.63 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.36 17.82 5.20 -92.71 -0.48 17.33 16 38 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.13 0.62 7.45 -2.39 -0.02 0.60 16 41 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -79.28 346.72 2.59 -76.69 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.28 Total: 31.17 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.41 Total: 10.72 kcal Atomic # 7 Polarization: -139.83 SS G_CDS: -5.39 Total: -145.22 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.90 Total: 50.31 kcal Total: -79.28 2.59 -76.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716012199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.190 kcal (2) G-P(sol) polarization free energy of solvation -79.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds