Wall clock time and date at job start Tue Mar 31 2020 01:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35368 * 127.24656 * 2 1 4 4 N 1.35034 * 107.22815 * 180.02562 * 3 2 1 5 5 C 1.46500 * 124.88545 * 180.02562 * 4 3 2 6 6 N 1.28472 * 110.23192 * 359.71842 * 4 3 2 7 7 C 1.31805 * 110.07062 * 0.46042 * 6 4 3 8 8 C 1.47716 * 126.52040 * 179.81811 * 7 6 4 9 9 O 1.21566 * 120.00487 * 179.41569 * 8 7 6 10 10 N 1.34777 * 119.99741 * 359.68510 * 8 7 6 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46997 * 325.00809 * 11 10 8 13 13 C 1.53007 * 109.46722 * 85.00322 * 11 10 8 14 14 C 1.52994 * 109.47471 * 205.00150 * 11 10 8 15 15 C 1.52998 * 109.47073 * 65.00011 * 14 11 10 16 16 N 1.46500 * 109.47341 * 179.97438 * 15 14 11 17 17 C 1.36940 * 120.00102 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99994 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99935 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46810 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46982 * 119.99602 * 21 19 17 24 24 H 1.48506 * 109.46706 * 239.99617 * 21 19 17 25 25 H 1.09007 * 109.47246 * 269.99940 * 1 2 3 26 26 H 1.08994 * 109.47124 * 30.00439 * 1 2 3 27 27 H 1.09005 * 109.46978 * 150.00515 * 1 2 3 28 28 H 1.07991 * 126.38582 * 359.96978 * 3 2 1 29 29 H 1.09000 * 109.47381 * 89.99894 * 5 4 3 30 30 H 1.09005 * 109.47109 * 209.99647 * 5 4 3 31 31 H 1.09000 * 109.47152 * 329.98904 * 5 4 3 32 32 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47129 * 300.00089 * 13 11 10 34 34 H 1.08994 * 109.47176 * 60.00197 * 13 11 10 35 35 H 1.09002 * 109.46998 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47370 * 185.00060 * 14 11 10 37 37 H 1.08998 * 109.47506 * 305.00016 * 14 11 10 38 38 H 1.08991 * 109.47626 * 300.00278 * 15 14 11 39 39 H 1.09007 * 109.47182 * 60.00234 * 15 14 11 40 40 H 0.97000 * 119.99895 * 0.02562 * 16 15 14 41 41 H 0.97008 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0006 5 6 4.7937 1.4576 -0.0002 6 7 3.5998 -0.6694 0.0050 7 6 2.3635 -1.1263 -0.0004 8 6 1.9506 -2.5446 -0.0006 9 8 0.7699 -2.8340 0.0048 10 7 2.8829 -3.5179 -0.0011 11 6 2.4734 -4.9245 -0.0007 12 1 1.5639 -5.0379 0.5893 13 6 2.2092 -5.3791 -1.4375 14 6 3.5864 -5.7795 0.6083 15 6 3.7653 -5.4096 2.0820 16 7 4.8307 -6.2287 2.6654 17 6 5.1704 -6.0733 3.9828 18 1 4.6532 -5.3467 4.5917 19 6 6.1802 -6.8491 4.5353 20 7 6.8108 -7.7344 3.7931 21 14 6.6440 -6.6367 6.3324 22 1 5.7920 -5.5845 6.9424 23 1 6.4384 -7.9195 7.0516 24 1 8.0708 -6.2368 6.4313 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 2.0219 2.1137 -0.0005 29 1 5.0912 1.6659 1.0275 30 1 5.6026 0.9387 -0.5146 31 1 4.5792 2.3950 -0.5135 32 1 3.8250 -3.2871 -0.0011 33 1 1.4163 -4.7700 -1.8714 34 1 3.1186 -5.2656 -2.0275 35 1 1.9042 -6.4256 -1.4372 36 1 3.3202 -6.8334 0.5279 37 1 4.5182 -5.5983 0.0725 38 1 4.0315 -4.3557 2.1625 39 1 2.8335 -5.5909 2.6179 40 1 5.2955 -6.8811 2.1183 41 1 7.5163 -8.2768 4.1793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716139358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:11 Heat of formation + Delta-G solvation = 43.106516 kcal Electronic energy + Delta-G solvation = -21606.511892 eV Core-core repulsion = 18330.318151 eV Total energy + Delta-G solvation = -3276.193741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.77137 -39.41676 -36.42819 -34.30769 -34.01942 -32.41743 -31.51996 -30.47980 -28.31783 -27.79829 -26.67423 -24.03543 -23.02494 -21.50343 -20.93853 -20.37563 -20.00515 -17.75197 -16.98941 -16.49430 -16.44555 -15.88265 -14.84449 -14.48750 -14.21042 -13.94196 -13.67992 -13.55678 -13.43127 -13.24578 -13.20026 -12.78970 -12.76263 -12.59550 -12.26823 -12.15821 -11.76646 -11.14796 -10.97517 -10.88037 -10.74290 -10.56640 -10.49395 -9.97515 -9.84349 -9.65702 -9.37297 -8.94516 -8.83983 -8.74571 -6.87209 -5.72807 -3.00945 1.55655 1.99304 2.29815 3.33926 3.45694 3.51331 3.52030 3.53815 4.17294 4.57425 4.61378 4.73185 4.77510 5.01348 5.04462 5.13113 5.21338 5.34771 5.43091 5.46068 5.60364 5.72751 5.80247 5.85350 5.88432 6.01802 6.08696 6.11955 6.30968 6.36892 6.39460 6.43241 6.60071 6.68713 6.90567 6.95433 7.59157 7.75043 7.88125 8.38097 8.46540 9.57538 10.15995 10.51011 11.50362 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003858 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.616775 B = 7256.111520 C = 8269.151466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.146 4.146 3 C -0.028 4.028 4 N -0.285 5.285 5 C 0.087 3.913 6 N -0.257 5.257 7 C -0.015 4.015 8 C 0.605 3.395 9 O -0.536 6.536 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.134 4.134 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.180 0.820 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.407 0.593 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 19.178 -12.712 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.157 4.157 3 C -0.170 4.170 4 N -0.073 5.073 5 C -0.053 4.053 6 N -0.093 5.093 7 C -0.176 4.176 8 C 0.389 3.611 9 O -0.412 6.412 10 N -0.357 5.357 11 C 0.040 3.960 12 H 0.108 0.892 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.197 0.803 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.800 18.747 -12.528 23.858 hybrid contribution 0.387 0.415 0.907 1.070 sum -7.413 19.162 -11.621 23.604 Atomic orbital electron populations 1.20164 0.88110 1.02871 1.02401 1.20389 0.97470 0.90472 1.07320 1.22590 0.83735 1.00466 1.10202 1.45271 1.07073 1.03788 1.51133 1.22177 0.84855 0.93658 1.04617 1.73546 1.23285 0.93707 1.18761 1.21916 0.89419 0.95186 1.11034 1.16847 0.85493 0.82544 0.76171 1.90742 1.16865 1.82687 1.50873 1.45988 1.10038 1.05944 1.73717 1.21016 0.99046 0.79280 0.96618 0.89179 1.22164 1.01787 1.01571 0.96357 1.22057 0.97719 0.99861 0.97621 1.20644 0.92072 0.94530 0.90190 1.42376 1.40708 1.44940 1.09794 1.19292 1.13995 1.16481 0.86963 0.91226 1.24730 0.99210 0.99066 0.98109 1.69674 1.27094 1.26523 1.35081 0.86122 0.77903 0.77237 0.85008 1.20589 1.21839 1.21903 0.91460 0.92213 0.89884 0.80308 0.89604 0.88421 0.88715 0.75772 0.92359 0.92547 0.91474 0.90173 0.91361 0.96268 0.96382 0.78333 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.92 36.00 0.36 -0.48 16 2 C -0.15 -1.81 6.25 -104.40 -0.65 -2.46 16 3 C -0.03 -0.26 11.40 -17.17 -0.20 -0.46 16 4 N -0.28 -2.93 3.70 -68.13 -0.25 -3.18 16 5 C 0.09 0.47 11.31 59.85 0.68 1.15 16 6 N -0.26 -3.50 11.67 33.42 0.39 -3.11 16 7 C -0.02 -0.23 7.13 -82.76 -0.59 -0.82 16 8 C 0.61 9.71 7.79 -12.39 -0.10 9.61 16 9 O -0.54 -9.56 14.78 5.31 0.08 -9.49 16 10 N -0.71 -10.56 4.53 -54.79 -0.25 -10.81 16 11 C 0.14 2.14 2.58 -67.93 -0.18 1.97 16 12 H 0.09 1.45 7.57 -51.93 -0.39 1.06 16 13 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 14 C -0.13 -2.21 4.87 -26.73 -0.13 -2.34 16 15 C 0.15 3.25 6.15 -4.04 -0.02 3.22 16 16 N -0.73 -19.31 5.60 -59.91 -0.34 -19.64 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 21 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.04 6.72 -51.93 -0.35 0.69 16 28 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.22 8.13 -51.93 -0.42 -0.20 16 32 H 0.41 5.90 8.33 -40.82 -0.34 5.56 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -35.51 348.37 -6.56 -42.07 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.42 Total: 8.95 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.72 Total: 0.14 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.28 Total: -64.84 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.51 -6.56 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716139358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.172 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds