Wall clock time and date at job start Tue Mar 31 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 C 1.46499 * 124.88662 * 180.14926 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47709 * 126.52140 * 180.02562 * 7 6 4 9 9 O 1.21570 * 120.00151 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99866 * 359.95506 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46934 * 35.00082 * 11 10 8 13 13 C 1.53005 * 109.46873 * 275.00162 * 11 10 8 14 14 C 1.52999 * 109.46845 * 155.00500 * 11 10 8 15 15 C 1.53000 * 109.46835 * 294.99702 * 14 11 10 16 16 N 1.46503 * 109.47185 * 180.02562 * 15 14 11 17 17 C 1.36929 * 120.00392 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99937 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00125 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00065 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00041 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47649 * 89.99410 * 21 19 17 23 23 H 1.48497 * 109.47425 * 209.99869 * 21 19 17 24 24 H 1.48508 * 109.47167 * 329.99431 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 28 28 H 1.08005 * 126.38490 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47503 * 270.26646 * 5 4 3 30 30 H 1.09004 * 109.46887 * 30.26184 * 5 4 3 31 31 H 1.08993 * 109.47239 * 150.26613 * 5 4 3 32 32 H 0.97005 * 119.99733 * 0.02562 * 10 8 7 33 33 H 1.08993 * 109.47275 * 299.99711 * 13 11 10 34 34 H 1.08996 * 109.47375 * 60.00426 * 13 11 10 35 35 H 1.09000 * 109.46450 * 180.02562 * 13 11 10 36 36 H 1.08993 * 109.47464 * 54.99932 * 14 11 10 37 37 H 1.09005 * 109.47003 * 175.00418 * 14 11 10 38 38 H 1.08993 * 109.47282 * 300.00342 * 15 14 11 39 39 H 1.08997 * 109.47352 * 60.00560 * 15 14 11 40 40 H 0.97007 * 119.99899 * 0.02562 * 16 15 14 41 41 H 0.97000 * 119.99853 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 6 4.7938 1.4575 0.0067 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0193 11 6 2.4732 -4.9245 -0.0256 12 1 1.5627 -5.0351 -0.6145 13 6 2.2117 -5.3860 1.4095 14 6 3.5852 -5.7766 -0.6407 15 6 3.7613 -5.3996 -2.1131 16 7 4.8256 -6.2159 -2.7023 17 6 5.1636 -6.0535 -4.0192 18 1 4.6452 -5.3240 -4.6238 19 6 6.1717 -6.8274 -4.5776 20 7 6.8030 -7.7169 -3.8410 21 14 6.6332 -6.6054 -6.3740 22 1 7.6994 -5.5781 -6.4880 23 1 7.1273 -7.8944 -6.9212 24 1 5.4395 -6.1672 -7.1413 25 1 -0.3633 -0.0057 1.0277 26 1 -0.3633 -0.8871 -0.5188 27 1 -0.3633 0.8929 -0.5089 28 1 2.0220 2.1138 -0.0004 29 1 5.0910 1.6715 -1.0199 30 1 4.5794 2.3920 0.5252 31 1 5.6027 0.9356 0.5178 32 1 3.8250 -3.2870 -0.0186 33 1 3.1222 -5.2754 1.9984 34 1 1.4196 -4.7790 1.8478 35 1 1.9074 -6.4326 1.4047 36 1 4.5179 -5.5979 -0.1059 37 1 3.3191 -6.8309 -0.5650 38 1 2.8285 -5.5782 -2.6479 39 1 4.0274 -4.3453 -2.1889 40 1 5.2910 -6.8715 -2.1594 41 1 7.5077 -8.2573 -4.2311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716139359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:13 Heat of formation + Delta-G solvation = 17.752433 kcal Electronic energy + Delta-G solvation = -21607.151663 eV Core-core repulsion = 18329.858486 eV Total energy + Delta-G solvation = -3277.293177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61885 -40.64018 -37.87074 -36.12890 -34.81564 -33.75685 -32.95909 -31.85324 -29.46025 -28.99889 -27.53616 -25.90076 -24.14365 -23.13004 -22.00947 -21.44908 -21.10932 -19.26679 -18.54725 -17.49150 -17.29147 -17.01261 -16.68367 -15.85142 -15.52971 -15.37044 -15.19702 -14.97971 -14.47024 -14.26914 -14.16908 -14.10717 -13.59887 -13.32899 -13.24430 -13.10883 -13.01085 -12.90158 -12.87147 -12.39981 -12.27705 -12.02840 -11.96333 -11.77675 -11.65450 -11.05447 -10.96247 -10.29705 -10.04783 -9.66283 -9.03567 -7.97963 -5.27422 0.54521 1.17370 1.45161 1.47182 1.56041 1.62921 2.22650 2.38290 2.53668 3.35216 3.37796 3.61381 3.89650 4.02968 4.05887 4.15286 4.36289 4.38412 4.41710 4.49937 4.54764 4.60805 4.63463 4.70379 4.74745 4.85108 4.91882 4.97196 5.07483 5.18689 5.23020 5.25053 5.31740 5.45375 5.52889 5.55253 5.93528 6.24514 6.45931 6.91751 7.19471 7.30873 8.05015 8.30777 9.25440 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003857 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.617255 B = 7257.791638 C = 8269.816613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.279 5.279 5 C 0.076 3.924 6 N -0.282 5.282 7 C -0.051 4.051 8 C 0.600 3.400 9 O -0.564 6.564 10 N -0.704 5.704 11 C 0.151 3.849 12 H 0.074 0.926 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.155 3.845 16 N -0.745 5.745 17 C -0.252 4.252 18 H 0.069 0.931 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.273 1.273 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.227 0.773 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.009 0.991 39 H 0.015 0.985 40 H 0.376 0.624 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 21.307 12.910 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.185 4.185 3 C -0.149 4.149 4 N -0.068 5.068 5 C -0.063 4.063 6 N -0.120 5.120 7 C -0.209 4.209 8 C 0.386 3.614 9 O -0.442 6.442 10 N -0.355 5.355 11 C 0.046 3.954 12 H 0.093 0.907 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.028 3.972 16 N -0.388 5.388 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.198 1.198 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.243 0.757 29 H 0.114 0.886 30 H 0.152 0.848 31 H 0.115 0.885 32 H 0.244 0.756 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.027 0.973 39 H 0.033 0.967 40 H 0.208 0.792 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.519 20.882 12.740 25.591 hybrid contribution 0.330 -0.143 -0.916 0.984 sum -7.189 20.739 11.824 24.932 Atomic orbital electron populations 1.20118 0.87520 1.02926 1.02430 1.20740 0.98338 0.90730 1.08665 1.23236 0.82752 1.01734 1.07198 1.45802 1.08832 1.03115 1.49023 1.22622 0.83366 0.94350 1.05921 1.73477 1.22955 0.95692 1.19858 1.21866 0.90687 0.94873 1.13494 1.17170 0.85195 0.83515 0.75563 1.90712 1.17826 1.83348 1.52277 1.45993 1.10049 1.05926 1.73517 1.20926 0.97519 0.79156 0.97795 0.90737 1.22076 1.02114 1.02219 0.94536 1.21896 0.98742 1.00530 0.94414 1.20728 0.90079 0.93538 0.92818 1.42541 1.41741 1.45204 1.09280 1.19592 1.14173 1.16242 0.88343 0.91337 1.25561 0.99379 0.98943 1.02488 1.69807 1.27606 1.27257 1.37057 0.85138 0.78071 0.76712 0.79822 1.21109 1.21695 1.19766 0.91210 0.92748 0.89376 0.75653 0.88568 0.84848 0.88475 0.75563 0.91472 0.92973 0.89943 0.90632 0.89472 0.97300 0.96713 0.79151 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.93 71.24 0.71 -0.80 16 2 C -0.17 -4.16 6.25 -19.72 -0.12 -4.29 16 3 C -0.01 -0.10 11.40 83.53 0.95 0.85 16 4 N -0.28 -5.14 3.70 -369.46 -1.37 -6.51 16 5 C 0.08 0.59 11.31 127.77 1.44 2.03 16 6 N -0.28 -7.56 11.67 -48.17 -0.56 -8.13 16 7 C -0.05 -1.52 7.13 42.46 0.30 -1.21 16 8 C 0.60 19.94 7.79 86.75 0.68 20.62 16 9 O -0.56 -21.04 14.78 -3.94 -0.06 -21.10 16 10 N -0.70 -21.59 4.53 -445.54 -2.02 -23.60 16 11 C 0.15 4.49 2.58 44.99 0.12 4.60 16 12 H 0.07 2.47 7.57 -2.39 -0.02 2.45 16 13 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 14 C -0.12 -3.87 4.87 30.59 0.15 -3.72 16 15 C 0.15 6.66 6.15 86.38 0.53 7.19 16 16 N -0.74 -39.67 5.60 -343.47 -1.92 -41.59 16 17 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 21 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.45 6.72 -2.39 -0.02 1.44 16 27 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.13 0.01 8.13 -2.38 -0.02 -0.01 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.41 12.12 8.33 -92.70 -0.77 11.35 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.01 0.66 7.75 -2.39 -0.02 0.64 16 40 H 0.38 20.80 7.67 -92.70 -0.71 20.09 16 41 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.92 348.37 2.68 -75.24 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.45 Total: 31.62 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 6.74 Total: 4.61 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -5.59 Total: -139.54 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -77.92 2.68 -75.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716139359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.991 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds