Wall clock time and date at job start Tue Mar 31 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46925 * 2 1 4 4 N 1.30450 * 125.99009 * 269.99500 * 3 2 1 5 5 N 1.39930 * 108.89878 * 179.97438 * 4 3 2 6 6 H 0.96999 * 125.75400 * 180.02562 * 5 4 3 7 7 C 1.34261 * 108.49354 * 359.75667 * 5 4 3 8 8 C 1.38048 * 107.41281 * 0.39118 * 7 5 4 9 9 C 1.47425 * 126.41104 * 179.87101 * 8 7 5 10 10 O 1.21605 * 120.00304 * 179.68505 * 9 8 7 11 11 N 1.34776 * 120.00239 * 359.69057 * 9 8 7 12 12 C 1.46502 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47022 * 324.99994 * 12 11 9 14 14 C 1.52997 * 109.46828 * 84.99718 * 12 11 9 15 15 C 1.52999 * 109.47435 * 205.00054 * 12 11 9 16 16 N 1.46503 * 109.47152 * 54.99785 * 15 12 11 17 17 C 1.46509 * 119.99911 * 270.00323 * 16 15 12 18 18 C 1.36932 * 119.99911 * 90.00356 * 16 15 12 19 19 H 1.08000 * 119.99928 * 339.75262 * 18 16 15 20 20 C 1.38808 * 120.00023 * 160.03269 * 18 16 15 21 21 N 1.31620 * 119.99958 * 344.64414 * 20 18 16 22 22 Si 1.86803 * 120.00012 * 164.63939 * 20 18 16 23 23 H 1.48498 * 109.46811 * 60.00621 * 22 20 18 24 24 H 1.48503 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47092 * 300.00252 * 22 20 18 26 26 H 1.09001 * 109.47272 * 60.00627 * 1 2 3 27 27 H 1.09009 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47563 * 299.99778 * 1 2 3 29 29 H 1.09002 * 109.47381 * 239.99475 * 2 1 3 30 30 H 1.09010 * 109.46988 * 119.99933 * 2 1 3 31 31 H 1.07995 * 126.29137 * 180.23946 * 7 5 4 32 32 H 0.97007 * 120.00011 * 359.97438 * 11 9 8 33 33 H 1.09006 * 109.46621 * 180.02562 * 14 12 11 34 34 H 1.08991 * 109.47513 * 300.00231 * 14 12 11 35 35 H 1.09002 * 109.47086 * 60.00874 * 14 12 11 36 36 H 1.09001 * 109.46866 * 295.00083 * 15 12 11 37 37 H 1.08991 * 109.47261 * 175.00307 * 15 12 11 38 38 H 1.09002 * 109.46449 * 264.77656 * 17 16 15 39 39 H 1.08997 * 109.47038 * 24.77447 * 17 16 15 40 40 H 1.08994 * 109.47061 * 144.77704 * 17 16 15 41 41 H 0.96999 * 120.00043 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1435 -1.0555 5 7 2.7330 3.4047 -0.6442 6 1 2.9903 4.1338 -1.2301 7 6 2.7384 3.4377 0.6979 8 6 2.3085 2.2038 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.7633 0.6641 2.8098 11 7 2.4617 2.6409 3.5437 12 6 2.3130 2.2238 4.9402 13 1 1.4529 1.5604 5.0316 14 6 3.5760 1.4862 5.3894 15 6 2.1019 3.4568 5.8211 16 7 0.9625 4.2277 5.3172 17 6 1.1736 5.2795 4.3194 18 6 -0.2996 3.9651 5.7787 19 1 -0.5180 3.0147 6.2430 20 6 -1.2999 4.9181 5.6447 21 7 -0.9874 6.1647 5.3607 22 14 -3.0896 4.4313 5.8671 23 1 -3.2894 3.8919 7.2361 24 1 -3.9544 5.6231 5.6742 25 1 -3.4478 3.3923 4.8684 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.0284 4.2747 1.3156 32 1 2.7779 3.5340 3.3354 33 1 3.4651 1.1755 6.4283 34 1 3.7264 0.6078 4.7619 35 1 4.4360 2.1496 5.2980 36 1 2.9982 4.0767 5.7992 37 1 1.9030 3.1418 6.8454 38 1 1.2658 6.2428 4.8211 39 1 2.0860 5.0722 3.7604 40 1 0.3260 5.3061 3.6347 41 1 -1.6864 6.8306 5.2666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716485234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:58 Heat of formation + Delta-G solvation = 50.776259 kcal Electronic energy + Delta-G solvation = -22730.881186 eV Core-core repulsion = 19455.020030 eV Total energy + Delta-G solvation = -3275.861156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34553 -38.86870 -36.33450 -34.32656 -33.80161 -31.65429 -30.62162 -30.23283 -29.29253 -26.21328 -25.61814 -23.96128 -23.35770 -21.67451 -20.61580 -19.79098 -19.34774 -18.20899 -16.76126 -16.19549 -15.30335 -15.15315 -14.94196 -14.59663 -14.06544 -13.91607 -13.64898 -13.55383 -13.23160 -12.91463 -12.72995 -12.21042 -12.11680 -11.98008 -11.44799 -11.37233 -11.30354 -11.07164 -10.80620 -10.67037 -10.65666 -10.59601 -10.18635 -10.02235 -9.85098 -9.52023 -9.31154 -8.78679 -8.57831 -8.34757 -6.77494 -5.73313 -3.16084 1.59379 2.28349 2.70289 3.41100 3.46028 3.49492 3.74918 3.89733 4.51635 4.53335 4.68982 5.14396 5.30097 5.39529 5.47654 5.48630 5.55560 5.61729 5.69870 5.77141 5.86105 5.97722 6.07292 6.10633 6.21224 6.28059 6.43220 6.49127 6.53715 6.54667 6.59450 6.83808 7.07430 7.16710 7.29870 7.55877 7.63627 7.81139 8.11952 8.37071 8.82206 9.22614 9.86065 10.32503 11.31991 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.005570 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.447691 B = 5025.969477 C = 5437.769311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.136 3.864 4 N -0.304 5.304 5 N -0.465 5.465 6 H 0.442 0.558 7 C 0.103 3.897 8 C -0.277 4.277 9 C 0.591 3.409 10 O -0.549 6.549 11 N -0.702 5.702 12 C 0.119 3.881 13 H 0.085 0.915 14 C -0.158 4.158 15 C 0.143 3.857 16 N -0.598 5.598 17 C 0.170 3.830 18 C -0.250 4.250 19 H 0.068 0.932 20 C 0.001 3.999 21 N -0.910 5.910 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.184 0.816 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.029 0.971 39 H -0.011 1.011 40 H 0.042 0.958 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 -5.129 -9.095 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.032 4.032 4 N -0.127 5.127 5 N -0.169 5.169 6 H 0.286 0.714 7 C -0.049 4.049 8 C -0.292 4.292 9 C 0.378 3.622 10 O -0.428 6.428 11 N -0.353 5.353 12 C 0.011 3.989 13 H 0.103 0.897 14 C -0.217 4.217 15 C 0.014 3.986 16 N -0.320 5.320 17 C 0.025 3.975 18 C -0.379 4.379 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.556 5.556 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.201 0.799 32 H 0.227 0.773 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.007 0.993 40 H 0.061 0.939 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.940 -5.711 -10.169 15.324 hybrid contribution -0.741 0.975 0.538 1.337 sum 9.199 -4.736 -9.631 14.136 Atomic orbital electron populations 1.21623 0.93966 1.01928 1.02246 1.20100 0.96575 0.88087 1.03805 1.22460 0.94950 0.96977 0.88777 1.77101 1.22260 0.90766 1.22561 1.46046 1.52171 1.13268 1.05447 0.71405 1.23175 0.97403 0.98788 0.85550 1.20446 1.18404 0.95203 0.95142 1.17174 0.76866 0.84802 0.83368 1.90692 1.47442 1.20473 1.84227 1.45859 1.67150 1.16145 1.06146 1.21879 0.97355 0.98993 0.80642 0.89682 1.22126 0.98063 1.00328 1.01180 1.21057 0.90738 0.91010 0.95756 1.43807 1.02749 1.39740 1.45701 1.20800 0.94755 0.91258 0.90700 1.19136 0.85635 0.98150 1.35007 0.91385 1.24902 0.98459 0.94848 1.01444 1.70059 1.31404 1.00415 1.53731 0.86372 0.85075 0.77228 0.78153 1.20908 1.21734 1.21098 0.93151 0.92052 0.91769 0.90996 0.88037 0.79879 0.77282 0.92042 0.92808 0.93196 0.94216 0.91913 0.95243 0.99270 0.93899 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.54 16 2 C -0.05 -0.64 5.97 -27.89 -0.17 -0.81 16 3 C 0.14 2.07 6.52 -82.02 -0.53 1.54 16 4 N -0.30 -4.33 12.63 33.89 0.43 -3.90 16 5 N -0.46 -5.11 7.29 30.85 0.22 -4.88 16 6 H 0.44 3.11 8.96 -182.73 -1.64 1.47 16 7 C 0.10 1.22 11.52 -16.56 -0.19 1.03 16 8 C -0.28 -4.26 6.13 -105.07 -0.64 -4.90 16 9 C 0.59 10.47 7.78 -12.52 -0.10 10.37 16 10 O -0.55 -11.15 14.58 5.27 0.08 -11.07 16 11 N -0.70 -11.62 4.51 -54.88 -0.25 -11.87 16 12 C 0.12 2.07 2.88 -67.93 -0.20 1.87 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 14 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 15 C 0.14 2.70 5.29 -4.04 -0.02 2.68 16 16 N -0.60 -14.13 2.78 -181.12 -0.50 -14.63 16 17 C 0.17 3.83 8.52 59.85 0.51 4.34 16 18 C -0.25 -6.74 9.67 -15.06 -0.15 -6.89 16 19 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 20 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 21 N -0.91 -26.07 10.66 55.49 0.59 -25.48 16 22 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.52 6.55 -51.92 -0.34 1.18 16 31 H 0.18 1.56 7.46 -52.49 -0.39 1.17 16 32 H 0.39 5.78 5.13 -40.82 -0.21 5.58 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 37 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 38 H 0.03 0.73 7.40 -51.93 -0.38 0.35 16 39 H -0.01 -0.20 5.76 -51.93 -0.30 -0.50 16 40 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -33.13 337.41 -7.60 -40.73 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.37 Total: 3.18 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.85 Total: 5.74 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.49 Total: -60.76 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.13 -7.60 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716485234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.505 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds