Wall clock time and date at job start Tue Mar 31 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46925 * 2 1 4 4 N 1.30450 * 125.99009 * 269.99500 * 3 2 1 5 5 N 1.39930 * 108.89878 * 179.97438 * 4 3 2 6 6 H 0.96999 * 125.75400 * 180.02562 * 5 4 3 7 7 C 1.34261 * 108.49354 * 359.75667 * 5 4 3 8 8 C 1.38048 * 107.41281 * 0.39118 * 7 5 4 9 9 C 1.47425 * 126.41104 * 179.87101 * 8 7 5 10 10 O 1.21605 * 120.00304 * 179.68505 * 9 8 7 11 11 N 1.34776 * 120.00239 * 359.69057 * 9 8 7 12 12 C 1.46502 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47022 * 324.99994 * 12 11 9 14 14 C 1.52997 * 109.46828 * 84.99718 * 12 11 9 15 15 C 1.52999 * 109.47435 * 205.00054 * 12 11 9 16 16 N 1.46503 * 109.47152 * 54.99785 * 15 12 11 17 17 C 1.46509 * 119.99911 * 270.00323 * 16 15 12 18 18 C 1.36932 * 119.99911 * 90.00356 * 16 15 12 19 19 H 1.08000 * 119.99928 * 339.75262 * 18 16 15 20 20 C 1.38808 * 120.00023 * 160.03269 * 18 16 15 21 21 N 1.31620 * 119.99958 * 344.64414 * 20 18 16 22 22 Si 1.86803 * 120.00012 * 164.63939 * 20 18 16 23 23 H 1.48498 * 109.46811 * 60.00621 * 22 20 18 24 24 H 1.48503 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47092 * 300.00252 * 22 20 18 26 26 H 1.09001 * 109.47272 * 60.00627 * 1 2 3 27 27 H 1.09009 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47563 * 299.99778 * 1 2 3 29 29 H 1.09002 * 109.47381 * 239.99475 * 2 1 3 30 30 H 1.09010 * 109.46988 * 119.99933 * 2 1 3 31 31 H 1.07995 * 126.29137 * 180.23946 * 7 5 4 32 32 H 0.97007 * 120.00011 * 359.97438 * 11 9 8 33 33 H 1.09006 * 109.46621 * 180.02562 * 14 12 11 34 34 H 1.08991 * 109.47513 * 300.00231 * 14 12 11 35 35 H 1.09002 * 109.47086 * 60.00874 * 14 12 11 36 36 H 1.09001 * 109.46866 * 295.00083 * 15 12 11 37 37 H 1.08991 * 109.47261 * 175.00307 * 15 12 11 38 38 H 1.09002 * 109.46449 * 264.77656 * 17 16 15 39 39 H 1.08997 * 109.47038 * 24.77447 * 17 16 15 40 40 H 1.08994 * 109.47061 * 144.77704 * 17 16 15 41 41 H 0.96999 * 120.00043 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1435 -1.0555 5 7 2.7330 3.4047 -0.6442 6 1 2.9903 4.1338 -1.2301 7 6 2.7384 3.4377 0.6979 8 6 2.3085 2.2038 1.1432 9 6 2.1593 1.7838 2.5485 10 8 1.7633 0.6641 2.8098 11 7 2.4617 2.6409 3.5437 12 6 2.3130 2.2238 4.9402 13 1 1.4529 1.5604 5.0316 14 6 3.5760 1.4862 5.3894 15 6 2.1019 3.4568 5.8211 16 7 0.9625 4.2277 5.3172 17 6 1.1736 5.2795 4.3194 18 6 -0.2996 3.9651 5.7787 19 1 -0.5180 3.0147 6.2430 20 6 -1.2999 4.9181 5.6447 21 7 -0.9874 6.1647 5.3607 22 14 -3.0896 4.4313 5.8671 23 1 -3.2894 3.8919 7.2361 24 1 -3.9544 5.6231 5.6742 25 1 -3.4478 3.3923 4.8684 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.0284 4.2747 1.3156 32 1 2.7779 3.5340 3.3354 33 1 3.4651 1.1755 6.4283 34 1 3.7264 0.6078 4.7619 35 1 4.4360 2.1496 5.2980 36 1 2.9982 4.0767 5.7992 37 1 1.9030 3.1418 6.8454 38 1 1.2658 6.2428 4.8211 39 1 2.0860 5.0722 3.7604 40 1 0.3260 5.3061 3.6347 41 1 -1.6864 6.8306 5.2666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716485234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:57 Heat of formation + Delta-G solvation = 27.937926 kcal Electronic energy + Delta-G solvation = -22731.871530 eV Core-core repulsion = 19455.020030 eV Total energy + Delta-G solvation = -3276.851501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40033 -40.23440 -37.96069 -35.80810 -35.07410 -33.21836 -32.28004 -31.28584 -30.48329 -27.97543 -27.37703 -25.06213 -24.59485 -23.27680 -22.03285 -21.11493 -20.47469 -19.32267 -18.68985 -17.45476 -16.93355 -16.66372 -16.23564 -15.67501 -15.58806 -15.26056 -15.09748 -15.04285 -14.73968 -14.43051 -13.89116 -13.63913 -13.41406 -13.28352 -13.18229 -12.77832 -12.70185 -12.49164 -12.44245 -12.27882 -12.13170 -11.98593 -11.83511 -11.78777 -11.69972 -10.71282 -10.59817 -10.52536 -10.00630 -9.64444 -8.72493 -7.81150 -5.24152 0.58035 1.12371 1.43734 1.46653 1.52306 1.81934 2.44276 2.52326 2.62090 3.31364 3.47869 3.73822 3.76401 4.10351 4.18590 4.31883 4.41929 4.45260 4.47771 4.55891 4.61631 4.68953 4.81945 4.84169 4.99234 5.01715 5.06380 5.17661 5.26029 5.29405 5.35159 5.45477 5.50329 5.65280 5.77459 5.82323 6.27370 6.34671 6.51888 6.83712 7.19365 7.50710 7.92882 8.31261 9.20636 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.005570 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.447691 B = 5025.969477 C = 5437.769311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C 0.122 3.878 4 N -0.320 5.320 5 N -0.446 5.446 6 H 0.461 0.539 7 C 0.130 3.870 8 C -0.316 4.316 9 C 0.587 3.413 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.128 3.872 13 H 0.045 0.955 14 C -0.146 4.146 15 C 0.143 3.857 16 N -0.612 5.612 17 C 0.182 3.818 18 C -0.253 4.253 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.222 0.778 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.004 0.996 39 H 0.041 0.959 40 H 0.009 0.991 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.949 -4.667 -9.781 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.046 4.046 4 N -0.143 5.143 5 N -0.152 5.152 6 H 0.309 0.691 7 C -0.024 4.024 8 C -0.331 4.331 9 C 0.375 3.625 10 O -0.467 6.467 11 N -0.349 5.349 12 C 0.020 3.980 13 H 0.063 0.937 14 C -0.205 4.205 15 C 0.016 3.984 16 N -0.335 5.335 17 C 0.037 3.963 18 C -0.384 4.384 19 H 0.079 0.921 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.594 -5.242 -10.874 16.737 hybrid contribution -1.170 0.830 0.722 1.606 sum 10.424 -4.412 -10.152 15.205 Atomic orbital electron populations 1.21559 0.94074 1.02700 1.00754 1.20076 0.96424 0.88079 1.03911 1.22635 0.95294 0.97550 0.89093 1.77045 1.22852 0.91925 1.22469 1.46083 1.50546 1.12879 1.05679 0.69089 1.23619 0.94658 0.98271 0.85899 1.20400 1.21569 0.97171 0.93936 1.17530 0.76117 0.84392 0.84434 1.90667 1.49100 1.22058 1.84908 1.45755 1.67001 1.16491 1.05616 1.21604 0.97609 0.97667 0.81082 0.93705 1.22004 0.96970 0.99932 1.01558 1.21228 0.90175 0.91265 0.95712 1.44017 1.03018 1.40261 1.46179 1.20574 0.95686 0.90012 0.89987 1.19365 0.87459 0.97616 1.33911 0.92087 1.25486 1.01385 0.95057 1.02434 1.70189 1.31740 1.00899 1.55258 0.85554 0.81645 0.76505 0.78071 1.20131 1.21848 1.21750 0.92622 0.90231 0.95018 0.89010 0.89662 0.76164 0.76134 0.90774 0.93802 0.90752 0.91172 0.92197 0.97773 0.94127 0.97194 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.89 71.98 0.71 -2.94 16 2 C -0.05 -1.27 5.97 29.85 0.18 -1.09 16 3 C 0.12 3.61 6.52 43.51 0.28 3.89 16 4 N -0.32 -8.53 12.63 -46.68 -0.59 -9.12 16 5 N -0.45 -8.47 7.29 -56.32 -0.41 -8.88 16 6 H 0.46 4.87 8.96 -213.43 -1.91 2.96 16 7 C 0.13 2.67 11.52 84.28 0.97 3.64 16 8 C -0.32 -9.33 6.13 -20.15 -0.12 -9.45 16 9 C 0.59 20.57 7.78 86.66 0.67 21.24 16 10 O -0.59 -24.40 14.58 -4.05 -0.06 -24.46 16 11 N -0.70 -21.97 4.51 -445.80 -2.01 -23.98 16 12 C 0.13 4.31 2.88 44.99 0.13 4.44 16 13 H 0.04 1.89 7.58 -2.39 -0.02 1.87 16 14 C -0.15 -3.84 9.48 71.98 0.68 -3.15 16 15 C 0.14 5.15 5.29 86.38 0.46 5.61 16 16 N -0.61 -28.44 2.78 -726.94 -2.02 -30.47 16 17 C 0.18 8.00 8.52 127.77 1.09 9.09 16 18 C -0.25 -13.71 9.67 84.03 0.81 -12.90 16 19 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 20 C -0.05 -2.71 5.06 84.86 0.43 -2.28 16 21 N -0.93 -53.92 10.66 21.65 0.23 -53.69 16 22 Si 0.95 46.01 29.58 68.60 2.03 48.04 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.63 6.55 -2.38 -0.02 2.62 16 31 H 0.22 2.70 7.46 -2.91 -0.02 2.67 16 32 H 0.40 10.60 5.13 -92.70 -0.48 10.12 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 37 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 38 H 0.00 0.20 7.40 -2.39 -0.02 0.18 16 39 H 0.04 1.32 5.76 -2.39 -0.01 1.31 16 40 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.64 337.41 2.12 -71.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -1.34 Total: 14.96 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.29 Total: 16.09 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -4.80 Total: -126.14 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.64 2.12 -71.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716485234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.458 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds