Wall clock time and date at job start Tue Mar 31 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35357 * 127.24808 * 2 1 4 4 N 1.35039 * 107.22878 * 179.85095 * 3 2 1 5 5 C 1.46497 * 124.88654 * 180.16958 * 4 3 2 6 6 N 1.28463 * 110.22691 * 0.43179 * 4 3 2 7 7 C 1.31806 * 110.07944 * 359.73496 * 6 4 3 8 8 C 1.47708 * 126.52313 * 180.02562 * 7 6 4 9 9 O 1.21568 * 120.00094 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00013 * 359.96931 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47332 * 325.00229 * 11 10 8 13 13 C 1.52996 * 109.46903 * 85.00520 * 11 10 8 14 14 C 1.53001 * 109.46959 * 205.00130 * 11 10 8 15 15 H 1.08997 * 109.47180 * 300.00193 * 14 11 10 16 16 C 1.52996 * 109.46995 * 60.00446 * 14 11 10 17 17 N 1.46508 * 109.46861 * 180.02562 * 14 11 10 18 18 C 1.36935 * 119.99636 * 154.99839 * 17 14 11 19 19 H 1.07994 * 120.00101 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99813 * 179.97438 * 18 17 14 21 21 N 1.31625 * 119.99632 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47092 * 60.00036 * 22 20 18 24 24 H 1.48503 * 109.47629 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47133 * 300.00121 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68450 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68551 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68531 * 1 2 3 29 29 H 1.08007 * 126.38823 * 0.02562 * 3 2 1 30 30 H 1.09004 * 109.46974 * 270.27959 * 5 4 3 31 31 H 1.09000 * 109.47142 * 30.27521 * 5 4 3 32 32 H 1.08997 * 109.47806 * 150.27978 * 5 4 3 33 33 H 0.97009 * 119.99746 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47250 * 299.99687 * 13 11 10 35 35 H 1.09004 * 109.47685 * 59.99654 * 13 11 10 36 36 H 1.09000 * 109.47328 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46966 * 179.97438 * 16 14 11 38 38 H 1.09000 * 109.47328 * 299.99406 * 16 14 11 39 39 H 1.08997 * 109.47364 * 59.99859 * 16 14 11 40 40 H 0.97003 * 119.99760 * 335.00570 * 17 14 11 41 41 H 0.97003 * 119.99599 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0034 5 6 4.7937 1.4574 0.0081 6 7 3.5998 -0.6694 -0.0037 7 6 2.3635 -1.1264 -0.0062 8 6 1.9505 -2.5446 -0.0135 9 8 0.7698 -2.8339 -0.0147 10 7 2.8828 -3.5179 -0.0189 11 6 2.4732 -4.9245 -0.0267 12 1 1.5634 -5.0413 0.5621 13 6 2.2101 -5.3710 -1.4662 14 6 3.5859 -5.7829 0.5783 15 1 4.4957 -5.6661 -0.0105 16 6 3.8491 -5.3364 2.0177 17 7 3.1766 -7.1896 0.5699 18 6 4.1240 -8.1783 0.5643 19 1 5.1729 -7.9211 0.5665 20 6 3.7362 -9.5111 0.5570 21 7 2.4578 -9.8245 0.5548 22 14 5.0285 -10.8599 0.5501 23 1 5.8760 -10.7396 1.7635 24 1 4.3601 -12.1860 0.5420 25 1 5.8768 -10.7264 -0.6614 26 1 -0.3633 -0.0057 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 2.0220 2.1138 0.0004 30 1 5.0913 1.6717 -1.0185 31 1 4.5792 2.3919 0.5266 32 1 5.6026 0.9356 0.5194 33 1 3.8250 -3.2870 -0.0176 34 1 1.4174 -4.7594 -1.8972 35 1 3.1199 -5.2542 -2.0550 36 1 1.9049 -6.4174 -1.4720 37 1 4.6414 -5.9483 2.4488 38 1 4.1538 -4.2899 2.0236 39 1 2.9393 -5.4532 2.6065 40 1 2.2344 -7.4206 0.5682 41 1 2.1868 -10.7559 0.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717411706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:45 Heat of formation + Delta-G solvation = 25.031796 kcal Electronic energy + Delta-G solvation = -21909.259629 eV Core-core repulsion = 18632.282109 eV Total energy + Delta-G solvation = -3276.977520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.60659 -40.69224 -38.24660 -35.62328 -34.80254 -33.68630 -32.74953 -31.03275 -30.15561 -28.97636 -27.51054 -25.91780 -24.70659 -23.21991 -21.74810 -21.41947 -20.93769 -19.37088 -18.57946 -17.41109 -17.27039 -16.89724 -16.52394 -15.86540 -15.48467 -15.30852 -14.97158 -14.70244 -14.42287 -14.19863 -14.11886 -14.05479 -13.46731 -13.30176 -13.24053 -13.18383 -12.98128 -12.92433 -12.70842 -12.59892 -12.27487 -12.19749 -11.79275 -11.72927 -11.48535 -11.05621 -10.95994 -10.28604 -10.04412 -9.65429 -9.01382 -7.90787 -5.20237 0.55299 1.18715 1.49360 1.52402 1.58200 1.63564 2.16787 2.38447 2.60785 3.37614 3.42779 3.76224 3.90747 4.00090 4.08910 4.20009 4.34357 4.39213 4.45224 4.51728 4.57256 4.62130 4.73807 4.76650 4.87664 4.91828 4.93423 5.01961 5.08835 5.15211 5.22985 5.29354 5.47056 5.50272 5.54900 5.58237 5.94966 6.29548 6.48772 6.93747 7.21526 7.36100 8.08390 8.33361 9.32543 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.003452 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.165926 B = 8108.230374 C = 8664.472606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.277 5.277 5 C 0.076 3.924 6 N -0.276 5.276 7 C -0.048 4.048 8 C 0.599 3.401 9 O -0.567 6.567 10 N -0.695 5.695 11 C 0.150 3.850 12 H 0.064 0.936 13 C -0.142 4.142 14 C 0.170 3.830 15 H 0.058 0.942 16 C -0.153 4.153 17 N -0.729 5.729 18 C -0.237 4.237 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.227 0.773 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.412 0.588 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.373 0.627 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 28.860 -1.765 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.185 4.185 3 C -0.147 4.147 4 N -0.066 5.066 5 C -0.062 4.062 6 N -0.114 5.114 7 C -0.206 4.206 8 C 0.385 3.615 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.045 3.955 12 H 0.082 0.918 13 C -0.200 4.200 14 C 0.061 3.939 15 H 0.076 0.924 16 C -0.213 4.213 17 N -0.369 5.369 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.203 1.203 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.244 0.756 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.248 0.752 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.205 0.795 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.756 28.281 -1.772 28.733 hybrid contribution -0.297 -1.064 0.093 1.108 sum 4.459 27.217 -1.680 27.631 Atomic orbital electron populations 1.20121 0.87859 1.02940 1.02273 1.20713 0.98209 0.90884 1.08706 1.23201 0.82781 1.01603 1.07141 1.45813 1.08790 1.03103 1.48869 1.22638 0.83241 0.94247 1.06106 1.73439 1.22544 0.95626 1.19791 1.21720 0.90849 0.94320 1.13711 1.17248 0.85104 0.83613 0.75585 1.90738 1.18208 1.83369 1.52113 1.45740 1.10155 1.05078 1.73675 1.20972 0.97996 0.79613 0.96939 0.91771 1.21925 1.01344 1.01075 0.95692 1.20514 0.95028 0.83743 0.94652 0.92357 1.22280 1.00621 1.00170 0.98230 1.42441 1.05783 0.99996 1.88720 1.19562 0.89572 0.86729 1.40965 0.90286 1.25543 0.97829 0.99476 1.03859 1.69830 1.15531 1.17167 1.59536 0.85221 0.78173 0.78236 0.78168 1.20470 1.22522 1.20300 0.91631 0.92869 0.89147 0.75644 0.88102 0.85173 0.88359 0.75175 0.93220 0.92017 0.92494 0.93578 0.91587 0.94670 0.79519 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.93 71.24 0.71 -0.88 16 2 C -0.17 -4.05 6.25 -19.72 -0.12 -4.18 16 3 C 0.00 -0.06 11.40 83.53 0.95 0.89 16 4 N -0.28 -4.38 3.70 -369.45 -1.37 -5.75 16 5 C 0.08 0.35 11.31 127.77 1.44 1.79 16 6 N -0.28 -6.67 11.67 -48.17 -0.56 -7.23 16 7 C -0.05 -1.38 7.13 42.46 0.30 -1.07 16 8 C 0.60 20.57 7.79 86.75 0.68 21.25 16 9 O -0.57 -22.87 14.78 -3.93 -0.06 -22.92 16 10 N -0.70 -22.41 4.38 -445.55 -1.95 -24.36 16 11 C 0.15 5.64 2.21 44.99 0.10 5.74 16 12 H 0.06 2.72 7.58 -2.39 -0.02 2.70 16 13 C -0.14 -5.35 9.33 71.98 0.67 -4.68 16 14 C 0.17 6.83 2.52 44.99 0.11 6.95 16 15 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 16 C -0.15 -5.69 9.33 71.98 0.67 -5.02 16 17 N -0.73 -37.04 4.43 -322.94 -1.43 -38.47 16 18 C -0.24 -13.07 9.93 84.03 0.83 -12.23 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 21 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 22 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.46 6.72 -2.39 -0.02 1.45 16 28 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.23 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.13 -0.28 8.13 -2.39 -0.02 -0.30 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.41 11.66 8.11 -92.70 -0.75 10.91 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.06 2.42 7.44 -2.39 -0.02 2.40 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.05 7.45 -2.39 -0.02 2.03 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.37 20.71 7.58 -92.71 -0.70 20.01 16 41 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -75.44 345.93 3.34 -72.10 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.41 Total: 33.38 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.82 Total: 4.70 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -5.03 Total: -135.66 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.44 3.34 -72.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717411706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.128 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds