Wall clock time and date at job start Tue Mar 31 2020 01:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30860 * 125.41185 * 2 1 4 4 C 1.33322 * 109.67849 * 179.72653 * 3 2 1 5 5 C 1.36666 * 107.78823 * 0.40320 * 4 3 2 6 6 C 1.46766 * 126.84278 * 179.87206 * 5 4 3 7 7 O 1.21679 * 119.99637 * 174.62591 * 6 5 4 8 8 N 1.34776 * 119.99902 * 354.62465 * 6 5 4 9 9 C 1.46501 * 119.99789 * 184.76766 * 8 6 5 10 10 C 1.52995 * 109.47457 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47074 * 64.99776 * 10 9 8 12 12 C 1.52997 * 109.47442 * 184.99737 * 10 9 8 13 13 N 1.46498 * 109.47203 * 305.00250 * 10 9 8 14 14 C 1.46507 * 119.99513 * 299.99893 * 13 10 9 15 15 C 1.36935 * 120.00590 * 119.99319 * 13 10 9 16 16 H 1.07998 * 119.99759 * 24.76007 * 15 13 10 17 17 C 1.38808 * 120.00159 * 204.75310 * 15 13 10 18 18 N 1.31621 * 119.99930 * 9.66989 * 17 15 13 19 19 Si 1.86800 * 120.00113 * 189.66408 * 17 15 13 20 20 H 1.48498 * 109.47085 * 60.00169 * 19 17 15 21 21 H 1.48500 * 109.47115 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46835 * 300.00028 * 19 17 15 23 23 N 1.34493 * 125.42231 * 179.97438 * 2 1 3 24 24 C 1.46503 * 126.46936 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.46861 * 270.02460 * 1 2 3 26 26 H 1.08990 * 109.47612 * 30.02668 * 1 2 3 27 27 H 1.09000 * 109.46548 * 150.03073 * 1 2 3 28 28 H 1.08005 * 126.10315 * 180.24429 * 4 3 2 29 29 H 0.96999 * 120.00565 * 4.76095 * 8 6 5 30 30 H 1.09006 * 109.46906 * 299.99599 * 9 8 6 31 31 H 1.08996 * 109.47379 * 59.99118 * 9 8 6 32 32 H 1.08994 * 109.47089 * 60.00183 * 12 10 9 33 33 H 1.09006 * 109.47350 * 180.02562 * 12 10 9 34 34 H 1.08996 * 109.46998 * 299.99636 * 12 10 9 35 35 H 1.08997 * 109.47279 * 85.61000 * 14 13 10 36 36 H 1.09005 * 109.46985 * 205.61515 * 14 13 10 37 37 H 1.09007 * 109.46936 * 325.60489 * 14 13 10 38 38 H 0.96997 * 119.99684 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47535 * 273.15921 * 24 23 2 40 40 H 1.08999 * 109.47124 * 33.16553 * 24 23 2 41 41 H 1.09004 * 109.46726 * 153.16085 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 0.0060 5 6 3.5976 -0.6608 0.0008 6 6 4.8030 -1.4981 0.0018 7 8 4.7036 -2.7072 0.0954 8 7 6.0198 -0.9277 -0.1010 9 6 7.2158 -1.7673 -0.2052 10 6 8.4560 -0.8776 -0.3099 11 1 8.5785 -0.3147 0.6156 12 6 9.6911 -1.7497 -0.5436 13 7 8.2962 0.0531 -1.4299 14 6 8.1139 -0.4615 -2.7895 15 6 8.3171 1.4039 -1.2061 16 1 8.8279 1.8000 -0.3410 17 6 7.6819 2.2639 -2.0913 18 7 6.9026 1.7794 -3.0349 19 14 7.9329 4.1091 -1.9434 20 1 9.3743 4.4271 -2.1062 21 1 7.1505 4.8013 -2.9988 22 1 7.4730 4.5656 -0.6071 23 7 2.2866 -1.0960 0.0005 24 6 1.8312 -2.4885 0.0016 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8896 -0.5142 27 1 -0.3632 -0.8903 -0.5134 28 1 4.3977 1.3724 0.0112 29 1 6.1037 0.0386 -0.1060 30 1 7.2948 -2.3986 0.6799 31 1 7.1430 -2.3947 -1.0935 32 1 9.5687 -2.3125 -1.4689 33 1 10.5748 -1.1158 -0.6177 34 1 9.8101 -2.4420 0.2898 35 1 7.0579 -0.6699 -2.9605 36 1 8.4588 0.2817 -3.5085 37 1 8.6898 -1.3790 -2.9109 38 1 6.4585 2.3804 -3.6532 39 1 1.6648 -2.8155 1.0280 40 1 0.9004 -2.5668 -0.5602 41 1 2.5897 -3.1191 -0.4622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717485377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:25 Heat of formation + Delta-G solvation = 44.492971 kcal Electronic energy + Delta-G solvation = -22743.173196 eV Core-core repulsion = 19467.039576 eV Total energy + Delta-G solvation = -3276.133620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00048 -38.84900 -36.66415 -34.19119 -33.45548 -32.21813 -31.58281 -29.35673 -27.87916 -26.78069 -26.02229 -25.21388 -23.09004 -22.30255 -20.10907 -19.61881 -19.13309 -17.31500 -16.91121 -16.00239 -15.85452 -15.38976 -15.12581 -14.43560 -13.95956 -13.86395 -13.62961 -13.31636 -13.08993 -12.82470 -12.74036 -12.59861 -12.42365 -12.33495 -12.15714 -12.07709 -11.58407 -11.06054 -10.79109 -10.72889 -10.37803 -10.30892 -10.07554 -9.88547 -9.80951 -9.51858 -9.43297 -8.57189 -8.52153 -8.10480 -6.79084 -5.77501 -3.25602 1.61416 2.68539 3.07030 3.37645 3.44196 3.45324 3.73813 3.90481 4.45482 4.46508 4.80582 4.91882 5.16283 5.24995 5.36836 5.39457 5.40078 5.51589 5.59512 5.60326 5.65577 5.86179 5.94813 6.07869 6.13029 6.27763 6.38464 6.39891 6.68512 6.80668 6.82692 6.89698 7.08049 7.24034 7.39739 7.69755 7.78525 8.07720 8.21760 8.37282 8.70765 9.19727 9.81620 10.32373 11.26888 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.006227 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.136771 B = 4495.762226 C = 5919.326138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.213 3.787 3 N -0.494 5.494 4 C 0.051 3.949 5 C -0.081 4.081 6 C 0.590 3.410 7 O -0.571 6.571 8 N -0.684 5.684 9 C 0.111 3.889 10 C 0.157 3.843 11 H 0.070 0.930 12 C -0.158 4.158 13 N -0.593 5.593 14 C 0.162 3.838 15 C -0.266 4.266 16 H 0.067 0.933 17 C 0.009 3.991 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.282 1.282 23 N -0.428 5.428 24 C 0.070 3.930 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.183 0.817 29 H 0.417 0.583 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.058 0.942 37 H -0.006 1.006 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -6.927 5.890 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.048 4.048 3 N -0.213 5.213 4 C -0.103 4.103 5 C -0.197 4.197 6 C 0.377 3.623 7 O -0.454 6.454 8 N -0.334 5.334 9 C -0.015 4.015 10 C 0.048 3.952 11 H 0.088 0.912 12 C -0.217 4.217 13 N -0.316 5.316 14 C 0.018 3.982 15 C -0.395 4.395 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.731 3.269 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.208 1.208 23 N -0.110 5.110 24 C -0.072 4.072 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.200 0.800 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.740 -7.048 5.767 12.622 hybrid contribution 0.436 0.638 -0.170 0.791 sum -8.304 -6.410 5.597 11.890 Atomic orbital electron populations 1.20204 0.84768 1.04053 1.03468 1.23365 0.95745 0.81419 1.04285 1.70097 1.02377 1.27978 1.20871 1.22775 0.94973 0.91578 1.00976 1.20822 0.85149 0.95049 1.18641 1.16736 0.82423 0.86315 0.76872 1.90700 1.87179 1.14333 1.53153 1.45505 1.04495 1.12085 1.71276 1.21974 0.85544 0.93630 1.00383 1.20670 0.90870 0.90784 0.92878 0.91225 1.22149 0.99212 0.99677 1.00677 1.43917 1.84810 1.01702 1.01150 1.20755 0.97051 0.94368 0.86040 1.19156 1.28402 0.81613 1.10323 0.91564 1.25041 0.97087 0.97938 0.98979 1.70047 1.31121 1.33527 1.19574 0.86394 0.77537 0.85533 0.77387 1.21193 1.21670 1.20790 1.44984 1.05290 1.07967 1.52729 1.22193 1.01966 0.79421 1.03647 0.90073 0.88976 0.90859 0.80014 0.74475 0.92633 0.92318 0.92953 0.92383 0.93577 0.96537 0.92375 0.98810 0.93542 0.90520 0.90009 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.18 36.01 0.37 -0.27 16 2 C 0.21 3.24 7.88 -155.61 -1.23 2.01 16 3 N -0.49 -9.01 11.20 -10.58 -0.12 -9.13 16 4 C 0.05 0.96 11.37 -17.47 -0.20 0.76 16 5 C -0.08 -1.50 6.91 -82.14 -0.57 -2.07 16 6 C 0.59 11.64 7.78 -12.81 -0.10 11.54 16 7 O -0.57 -11.90 14.88 5.21 0.08 -11.82 16 8 N -0.68 -13.37 5.38 -61.59 -0.33 -13.70 16 9 C 0.11 2.05 4.97 -4.04 -0.02 2.03 16 10 C 0.16 2.96 2.87 -67.94 -0.20 2.76 16 11 H 0.07 1.30 7.88 -51.92 -0.41 0.89 16 12 C -0.16 -2.56 9.16 37.16 0.34 -2.22 16 13 N -0.59 -13.54 2.28 -173.48 -0.40 -13.93 16 14 C 0.16 3.84 8.17 59.85 0.49 4.33 16 15 C -0.27 -6.65 9.30 -15.06 -0.14 -6.79 16 16 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.01 0.23 5.11 -17.43 -0.09 0.15 16 18 N -0.90 -24.58 10.69 55.49 0.59 -23.99 16 19 Si 0.90 20.93 29.56 -169.99 -5.03 15.90 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.43 -6.74 3.17 -117.27 -0.37 -7.11 16 24 C 0.07 0.83 10.47 59.85 0.63 1.46 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.54 7.10 -51.93 -0.37 0.17 16 28 H 0.18 3.41 7.47 -52.48 -0.39 3.02 16 29 H 0.42 8.60 6.84 -40.82 -0.28 8.32 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 32 H 0.05 0.86 6.69 -51.93 -0.35 0.51 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.42 7.84 -51.93 -0.41 0.02 16 36 H 0.06 1.51 6.72 -51.93 -0.35 1.16 16 37 H -0.01 -0.14 6.44 -51.92 -0.33 -0.47 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.69 7.12 -51.93 -0.37 0.32 16 41 H 0.10 1.45 6.43 -51.93 -0.33 1.12 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -30.65 336.00 -7.30 -37.95 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.08 Total: 7.09 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.71 Total: 13.68 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.62 Total: -67.87 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.65 -7.30 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717485377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.440 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds