Wall clock time and date at job start Tue Mar 31 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30861 * 125.41655 * 2 1 4 4 C 1.33323 * 109.68666 * 179.74246 * 3 2 1 5 5 C 1.36656 * 107.78162 * 0.37737 * 4 3 2 6 6 C 1.46773 * 126.84286 * 179.89168 * 5 4 3 7 7 O 1.21680 * 120.00456 * 185.13179 * 6 5 4 8 8 N 1.34784 * 119.99644 * 5.13729 * 6 5 4 9 9 C 1.46499 * 119.99898 * 184.88609 * 8 6 5 10 10 C 1.52994 * 109.46919 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47495 * 294.99887 * 10 9 8 12 12 C 1.53011 * 109.46773 * 175.00212 * 10 9 8 13 13 N 1.46501 * 109.47291 * 55.00382 * 10 9 8 14 14 C 1.46494 * 119.99772 * 60.00025 * 13 10 9 15 15 C 1.36930 * 119.99695 * 239.99541 * 13 10 9 16 16 H 1.08001 * 120.00439 * 38.96014 * 15 13 10 17 17 C 1.38812 * 119.99828 * 218.95094 * 15 13 10 18 18 N 1.31619 * 119.99919 * 26.78612 * 17 15 13 19 19 Si 1.86806 * 120.00158 * 206.50269 * 17 15 13 20 20 H 1.48500 * 109.46930 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46617 * 120.00233 * 19 17 15 22 22 H 1.48497 * 109.47490 * 240.00599 * 19 17 15 23 23 N 1.34493 * 125.42499 * 179.97438 * 2 1 3 24 24 C 1.46507 * 126.47053 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.46958 * 270.02168 * 1 2 3 26 26 H 1.08994 * 109.47161 * 30.02849 * 1 2 3 27 27 H 1.09006 * 109.46549 * 150.02723 * 1 2 3 28 28 H 1.08003 * 126.10503 * 180.27323 * 4 3 2 29 29 H 0.96995 * 120.00239 * 4.88971 * 8 6 5 30 30 H 1.09000 * 109.46519 * 59.99952 * 9 8 6 31 31 H 1.09002 * 109.47210 * 300.00268 * 9 8 6 32 32 H 1.09000 * 109.46618 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.46845 * 300.00073 * 12 10 9 34 34 H 1.08998 * 109.46926 * 60.00532 * 12 10 9 35 35 H 1.09006 * 109.46901 * 274.31882 * 14 13 10 36 36 H 1.08998 * 109.47889 * 34.31673 * 14 13 10 37 37 H 1.09000 * 109.47275 * 154.32123 * 14 13 10 38 38 H 0.96998 * 119.99892 * 5.09473 * 18 17 15 39 39 H 1.08993 * 109.47111 * 271.91189 * 24 23 2 40 40 H 1.09005 * 109.46755 * 31.90793 * 24 23 2 41 41 H 1.09002 * 109.46873 * 151.90540 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 0.0056 5 6 3.5976 -0.6606 0.0008 6 6 4.8029 -1.4981 0.0020 7 8 4.7042 -2.7068 -0.0970 8 7 6.0193 -0.9282 0.1130 9 6 7.2264 -1.7515 0.0068 10 6 8.4635 -0.8657 0.1667 11 1 8.5186 -0.1646 -0.6661 12 6 9.7188 -1.7405 0.1806 13 7 8.3725 -0.1222 1.4257 14 6 8.2870 -0.8437 2.6978 15 6 8.3673 1.2470 1.4134 16 1 7.8293 1.7782 0.6422 17 6 9.0535 1.9525 2.3923 18 7 10.0947 1.4095 2.9869 19 14 8.5042 3.6755 2.8602 20 1 7.3213 4.0559 2.0470 21 1 8.1447 3.7063 4.3007 22 1 9.6095 4.6339 2.6053 23 7 2.2865 -1.0959 0.0005 24 6 1.8313 -2.4885 0.0006 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 4.3978 1.3724 0.0112 29 1 6.0955 0.0271 0.2631 30 1 7.2507 -2.2363 -0.9691 31 1 7.2187 -2.5102 0.7894 32 1 10.6002 -1.1094 0.2940 33 1 9.6638 -2.4416 1.0134 34 1 9.7866 -2.2936 -0.7562 35 1 7.2465 -1.0945 2.9041 36 1 8.8761 -1.7588 2.6370 37 1 8.6748 -0.2146 3.4991 38 1 10.4277 0.5480 2.6907 39 1 1.6854 -2.8230 1.0276 40 1 0.8893 -2.5628 -0.5430 41 1 2.5803 -3.1156 -0.4830 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717485378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:28 Heat of formation + Delta-G solvation = 37.803896 kcal Electronic energy + Delta-G solvation = -22469.863268 eV Core-core repulsion = 19193.439588 eV Total energy + Delta-G solvation = -3276.423680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.22079 -39.06958 -36.85115 -34.43171 -33.71060 -32.34030 -31.70150 -29.41435 -28.05683 -26.96049 -26.09799 -25.32795 -22.94575 -22.46772 -20.32212 -19.85287 -19.33208 -17.65001 -17.27325 -16.20824 -16.05074 -15.51987 -15.17323 -14.32452 -14.18015 -13.86547 -13.82482 -13.51574 -13.46627 -13.27015 -12.96646 -12.79598 -12.58386 -12.48573 -12.26640 -12.20833 -11.46021 -11.24418 -10.89761 -10.73368 -10.57365 -10.28074 -10.21397 -10.06910 -9.73687 -9.63892 -9.42501 -8.77029 -8.39419 -8.33640 -6.86798 -6.09631 -3.45525 1.38883 2.48787 2.84955 3.49371 3.51367 3.53424 3.63319 3.64778 4.27619 4.52715 4.64012 4.73395 4.99608 5.06138 5.21279 5.25370 5.31684 5.33774 5.44253 5.46742 5.49478 5.65631 5.84855 5.98532 6.08393 6.12598 6.23486 6.29529 6.55487 6.55917 6.69894 6.78442 6.80681 6.96226 7.02708 7.18493 7.83704 7.97681 8.03269 8.45866 8.54638 9.07112 9.74711 10.22685 11.09973 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.005217 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.519007 B = 5365.372065 C = 6647.156930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.218 3.782 3 N -0.493 5.493 4 C 0.044 3.956 5 C -0.083 4.083 6 C 0.589 3.411 7 O -0.565 6.565 8 N -0.690 5.690 9 C 0.113 3.887 10 C 0.152 3.848 11 H 0.072 0.928 12 C -0.158 4.158 13 N -0.591 5.591 14 C 0.119 3.881 15 C -0.364 4.364 16 H 0.052 0.948 17 C -0.012 4.012 18 N -0.900 5.900 19 Si 1.065 2.935 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.294 1.294 23 N -0.426 5.426 24 C 0.066 3.934 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.182 0.818 29 H 0.413 0.587 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.043 0.957 35 H -0.001 1.001 36 H 0.019 0.981 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.877 -6.172 -6.498 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.044 4.044 3 N -0.213 5.213 4 C -0.111 4.111 5 C -0.199 4.199 6 C 0.375 3.625 7 O -0.446 6.446 8 N -0.340 5.340 9 C -0.013 4.013 10 C 0.044 3.956 11 H 0.090 0.910 12 C -0.218 4.218 13 N -0.314 5.314 14 C -0.027 4.027 15 C -0.493 4.493 16 H 0.069 0.931 17 C -0.217 4.217 18 N -0.538 5.538 19 Si 0.894 3.106 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.221 1.221 23 N -0.108 5.108 24 C -0.076 4.076 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.199 0.801 29 H 0.251 0.749 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.965 -5.128 -5.537 16.761 hybrid contribution 0.203 -1.735 -0.872 1.953 sum -14.762 -6.863 -6.410 17.496 Atomic orbital electron populations 1.20234 0.84580 1.04093 1.03750 1.23410 0.95837 0.81323 1.03845 1.70107 1.02247 1.28010 1.20893 1.22754 0.95123 0.91485 1.01699 1.20830 0.85256 0.95020 1.18783 1.16779 0.82345 0.86401 0.76982 1.90716 1.87015 1.14167 1.52741 1.45573 1.04249 1.13356 1.70801 1.21970 0.84721 0.94207 1.00385 1.20794 0.90343 0.92811 0.91639 0.91011 1.22171 0.99615 0.99936 1.00057 1.43905 1.85546 1.02549 0.99429 1.21039 0.96364 0.95052 0.90222 1.19825 1.30870 0.81189 1.17385 0.93061 1.25966 0.93184 1.04371 0.98151 1.70715 1.18806 1.19340 1.44893 0.83547 0.75444 0.75236 0.76326 1.21425 1.21661 1.22075 1.45027 1.05231 1.08134 1.52389 1.22265 1.02095 0.79236 1.04008 0.89852 0.88880 0.90768 0.80074 0.74939 0.92356 0.92142 0.92173 0.93231 0.93784 0.98320 0.96256 0.91724 0.91830 0.90386 0.89797 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.18 36.00 0.37 -0.18 16 2 C 0.22 2.87 7.88 -155.61 -1.23 1.64 16 3 N -0.49 -7.83 11.20 -10.58 -0.12 -7.95 16 4 C 0.04 0.70 11.36 -17.48 -0.20 0.50 16 5 C -0.08 -1.35 6.91 -82.14 -0.57 -1.91 16 6 C 0.59 10.47 7.78 -12.81 -0.10 10.37 16 7 O -0.56 -10.94 14.83 5.21 0.08 -10.86 16 8 N -0.69 -12.21 5.37 -61.59 -0.33 -12.54 16 9 C 0.11 1.99 4.97 -4.05 -0.02 1.97 16 10 C 0.15 2.93 2.87 -67.93 -0.20 2.73 16 11 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 12 C -0.16 -2.79 9.16 37.16 0.34 -2.44 16 13 N -0.59 -13.51 1.93 -173.49 -0.34 -13.85 16 14 C 0.12 2.71 9.00 59.84 0.54 3.25 16 15 C -0.36 -9.30 9.00 -15.06 -0.14 -9.44 16 16 H 0.05 1.30 7.96 -52.49 -0.42 0.89 16 17 C -0.01 -0.32 4.74 -17.43 -0.08 -0.40 16 18 N -0.90 -25.82 12.35 55.49 0.69 -25.13 16 19 Si 1.06 24.39 29.99 -169.99 -5.10 19.29 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 N -0.43 -5.90 3.17 -117.27 -0.37 -6.27 16 24 C 0.07 0.68 10.56 59.85 0.63 1.31 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.42 7.07 -51.93 -0.37 0.05 16 28 H 0.18 2.70 7.50 -52.48 -0.39 2.31 16 29 H 0.41 7.47 6.88 -40.82 -0.28 7.19 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.14 7.84 -51.93 -0.41 0.73 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.87 6.69 -51.93 -0.35 0.52 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.02 0.40 6.44 -51.93 -0.33 0.07 16 37 H 0.06 1.66 5.82 -51.93 -0.30 1.36 16 38 H 0.27 7.83 7.42 -40.82 -0.30 7.53 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.57 7.07 -51.93 -0.37 0.20 16 41 H 0.11 1.31 6.29 -51.93 -0.33 0.98 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -31.65 336.45 -7.08 -38.73 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.01 Total: 6.11 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.65 Total: 7.40 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.47 Total: -65.74 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.10 Total: 19.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.65 -7.08 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717485378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.534 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds