Wall clock time and date at job start Tue Mar 31 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21598 * 120.00059 * 359.97438 * 9 8 7 11 11 C 1.47434 * 119.99611 * 179.97438 * 9 8 7 12 12 C 1.41287 * 126.41843 * 359.69409 * 11 9 8 13 13 N 1.30445 * 108.02446 * 179.87802 * 12 11 9 14 14 N 1.39934 * 108.89702 * 0.37682 * 13 12 11 15 15 H 0.97002 * 125.75837 * 179.73032 * 14 13 12 16 16 C 1.34261 * 108.49213 * 359.75886 * 14 13 12 17 17 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 4 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 4 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 4 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 27 27 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 29 29 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 30 30 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 32 32 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 33 33 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 34 34 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 35 35 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 36 36 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 37 37 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 38 38 H 1.08003 * 125.98964 * 359.97438 * 12 11 9 39 39 H 1.07999 * 126.29252 * 180.02562 * 16 14 13 40 40 H 0.97000 * 119.99792 * 264.99726 * 17 4 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 6 4.0801 -1.5482 2.4311 8 7 5.5451 -1.5471 2.4317 9 6 6.2190 -2.2160 3.3881 10 8 5.6111 -2.8201 4.2508 11 6 7.6934 -2.2154 3.3884 12 6 8.5320 -1.5682 2.4536 13 7 9.7699 -1.7997 2.7938 14 7 9.7823 -2.6015 3.9406 15 1 10.5745 -2.9226 4.3991 16 6 8.5129 -2.8520 4.2988 17 7 1.5517 -0.0306 2.4454 18 6 0.3102 -0.3211 2.9447 19 1 -0.3089 -1.0596 2.4570 20 6 -0.1502 0.3291 4.0815 21 7 0.6044 1.2286 4.6762 22 14 -1.8407 -0.0727 4.7672 23 1 -1.8991 -1.5118 5.1286 24 1 -2.0936 0.7523 5.9757 25 1 -2.8737 0.2224 3.7420 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.9337 -1.1547 0.3181 34 1 3.9330 0.3031 1.3393 35 1 3.7165 -1.1141 3.3624 36 1 3.7172 -2.5719 2.3413 37 1 6.0301 -1.0650 1.7438 38 1 8.2055 -0.9829 1.6066 39 1 8.1919 -3.4426 5.1441 40 1 2.1078 0.6323 2.8837 41 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717717721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:42 Heat of formation + Delta-G solvation = 32.938606 kcal Electronic energy + Delta-G solvation = -21739.982455 eV Core-core repulsion = 18463.347800 eV Total energy + Delta-G solvation = -3276.634655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.50326 -38.98156 -37.41647 -34.60092 -32.78957 -32.16534 -31.09513 -30.29736 -29.14245 -26.43546 -25.40357 -23.35093 -22.51962 -22.17512 -21.08077 -20.02347 -18.83664 -18.44201 -17.11663 -16.09136 -15.70502 -15.40039 -14.93966 -14.79671 -14.42905 -14.24002 -13.70875 -13.59735 -13.31786 -13.05766 -12.95809 -12.50501 -12.37912 -11.39657 -11.31004 -11.24077 -11.11603 -10.80357 -10.79679 -10.63674 -10.29453 -10.16363 -10.11568 -10.02042 -9.88995 -9.59202 -9.35792 -9.07451 -8.79571 -8.63792 -6.87167 -5.69617 -2.96460 1.38240 2.00246 2.45355 3.48749 3.49083 3.54124 3.54324 3.58504 4.44356 4.63356 4.65665 5.02048 5.13215 5.31207 5.45676 5.50274 5.56853 5.72469 5.79912 5.86388 6.04001 6.08418 6.12216 6.24498 6.38021 6.39918 6.49484 6.66047 6.67309 6.75153 6.81263 6.83159 6.91070 6.92770 7.12832 7.21139 7.42019 7.77735 7.78675 8.48689 8.50967 9.60336 10.17490 10.52536 11.52814 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.003858 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.952345 B = 7256.835316 C = 8270.916186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.183 3.817 5 H 0.048 0.952 6 C -0.134 4.134 7 C 0.124 3.876 8 N -0.724 5.724 9 C 0.588 3.412 10 O -0.547 6.547 11 C -0.287 4.287 12 C 0.084 3.916 13 N -0.299 5.299 14 N -0.467 5.467 15 H 0.444 0.556 16 C 0.130 3.870 17 N -0.717 5.717 18 C -0.230 4.230 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.287 1.287 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.191 0.809 39 H 0.192 0.808 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.106 -5.459 -6.827 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.073 3.927 5 H 0.066 0.934 6 C -0.173 4.173 7 C 0.001 3.999 8 N -0.374 5.374 9 C 0.374 3.626 10 O -0.425 6.425 11 C -0.302 4.302 12 C -0.104 4.104 13 N -0.120 5.120 14 N -0.172 5.172 15 H 0.288 0.712 16 C -0.022 4.022 17 N -0.359 5.359 18 C -0.362 4.362 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.214 1.214 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.227 0.773 38 H 0.207 0.793 39 H 0.209 0.791 40 H 0.218 0.782 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.683 -5.737 -6.447 18.783 hybrid contribution -1.021 0.004 0.625 1.197 sum 15.662 -5.733 -5.822 17.665 Atomic orbital electron populations 1.21853 0.95389 1.00764 1.01926 1.21684 0.96563 0.96511 0.98265 1.21752 0.99408 0.96957 1.01442 1.20186 0.89396 0.95441 0.87722 0.93357 1.22094 0.98411 1.00078 0.96709 1.21444 0.77012 1.00601 1.00802 1.45871 1.08276 1.53187 1.30061 1.17205 0.85218 0.78808 0.81367 1.90806 1.69746 1.44466 1.37473 1.20451 0.94685 1.12698 1.02395 1.24113 0.89572 0.97859 0.98890 1.77135 1.21315 1.13044 1.00545 1.46218 1.07394 1.40559 1.23032 0.71191 1.23086 0.83926 0.96681 0.98552 1.42394 1.17882 1.47381 1.28204 1.19148 0.92774 1.17720 1.06523 0.91155 1.24680 0.98206 0.99516 0.98440 1.69637 1.36892 1.29347 1.22161 0.86369 0.84569 0.77544 0.78347 1.21369 1.21893 1.21421 0.95284 0.94220 0.89368 0.93659 0.93920 0.94675 0.91299 0.92033 0.91277 0.89696 0.91906 0.77257 0.79255 0.79122 0.78246 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.26 37.16 0.31 -2.29 16 2 C -0.11 -1.83 2.80 -90.62 -0.25 -2.09 16 3 C -0.14 -2.26 8.68 37.16 0.32 -1.94 16 4 C 0.18 3.36 2.19 -67.93 -0.15 3.21 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C -0.13 -1.99 4.36 -26.73 -0.12 -2.10 16 7 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 8 N -0.72 -9.74 5.55 -61.39 -0.34 -10.08 16 9 C 0.59 8.90 7.81 -12.52 -0.10 8.80 16 10 O -0.55 -10.65 16.90 5.28 0.09 -10.56 16 11 C -0.29 -3.38 6.13 -105.06 -0.64 -4.02 16 12 C 0.08 0.83 11.50 -16.98 -0.20 0.63 16 13 N -0.30 -3.10 12.63 30.86 0.39 -2.71 16 14 N -0.47 -3.72 7.29 30.85 0.22 -3.50 16 15 H 0.44 1.89 8.96 -182.72 -1.64 0.26 16 16 C 0.13 1.23 11.82 -16.56 -0.20 1.03 16 17 N -0.72 -16.52 3.69 -53.42 -0.20 -16.72 16 18 C -0.23 -6.03 7.57 -15.06 -0.11 -6.14 16 19 H 0.07 1.81 7.40 -52.49 -0.39 1.42 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 22 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.92 6.01 -51.93 -0.31 1.60 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.61 6.55 -51.93 -0.34 0.27 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 35 H 0.08 1.74 7.75 -51.93 -0.40 1.34 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.39 3.93 7.43 -40.82 -0.30 3.62 16 38 H 0.19 1.26 7.50 -52.48 -0.39 0.87 16 39 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.38 9.57 7.80 -40.82 -0.32 9.26 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -33.50 339.17 -7.63 -41.12 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.35 Total: 10.24 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.25 Total: -3.34 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.80 Total: -59.84 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.50 -7.63 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717717721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.062 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds