Wall clock time and date at job start Tue Mar 31 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.65216 * 2 1 4 4 C 1.34122 * 109.25428 * 180.29168 * 3 2 1 5 5 C 1.34673 * 108.02539 * 359.71840 * 4 3 2 6 6 N 1.35047 * 125.64675 * 179.81916 * 2 1 3 7 7 C 1.46495 * 126.39950 * 359.97438 * 6 2 1 8 8 C 1.50696 * 109.47126 * 84.71460 * 7 6 2 9 9 O 1.21278 * 120.00115 * 359.97438 * 8 7 6 10 10 N 1.34786 * 120.00179 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99884 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46653 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46884 * 305.00622 * 13 12 11 15 15 C 1.52997 * 109.47127 * 184.99870 * 13 12 11 16 16 N 1.46497 * 109.46631 * 65.00087 * 13 12 11 17 17 C 1.36945 * 119.99649 * 204.99948 * 16 13 12 18 18 H 1.07997 * 120.00244 * 359.97438 * 17 16 13 19 19 C 1.38812 * 119.99544 * 180.02562 * 17 16 13 20 20 N 1.31613 * 120.00617 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99539 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47409 * 59.99747 * 21 19 17 23 23 H 1.48508 * 109.46880 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47283 * 299.99411 * 21 19 17 25 25 H 1.08998 * 109.47340 * 270.17645 * 1 2 3 26 26 H 1.09000 * 109.46713 * 30.17951 * 1 2 3 27 27 H 1.09000 * 109.47326 * 150.17652 * 1 2 3 28 28 H 1.08003 * 125.99180 * 179.72728 * 4 3 2 29 29 H 1.07992 * 126.59365 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47318 * 324.71192 * 7 6 2 31 31 H 1.09000 * 109.47236 * 204.71432 * 7 6 2 32 32 H 0.97002 * 119.99650 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47408 * 60.00184 * 11 10 8 34 34 H 1.09006 * 109.47093 * 299.99401 * 11 10 8 35 35 H 1.08996 * 109.46933 * 60.00052 * 12 11 10 36 36 H 1.09000 * 109.47335 * 299.99924 * 12 11 10 37 37 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.46832 * 60.00321 * 15 13 12 39 39 H 1.09004 * 109.47261 * 300.00303 * 15 13 12 40 40 H 0.96996 * 120.00792 * 25.00239 * 16 13 12 41 41 H 0.97006 * 120.00607 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0064 5 6 3.5926 -0.6644 -0.0043 6 7 2.2940 -1.0974 0.0035 7 6 1.8425 -2.4910 0.0084 8 6 1.5626 -2.9334 -1.4047 9 8 1.7240 -2.1605 -2.3253 10 7 1.1320 -4.1877 -1.6455 11 6 0.8605 -4.6178 -3.0194 12 6 0.3887 -6.0733 -3.0142 13 6 0.1045 -6.5224 -4.4489 14 1 -0.6062 -5.8367 -4.9102 15 6 -0.4848 -7.9343 -4.4341 16 7 1.3521 -6.5221 -5.2168 17 6 1.3179 -6.3804 -6.5785 18 1 0.3713 -6.2693 -7.0863 19 6 2.5001 -6.3806 -7.3061 20 7 3.6538 -6.5164 -6.6874 21 14 2.4535 -6.1865 -9.1634 22 1 1.8192 -4.8894 -9.5099 23 1 3.8382 -6.2187 -9.6993 24 1 1.6664 -7.2968 -9.7576 25 1 -0.3634 0.0032 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3634 -0.8916 -0.5111 28 1 4.4099 1.3409 -0.0122 29 1 4.4776 -1.2833 -0.0085 30 1 0.9327 -2.5761 0.6027 31 1 2.6187 -3.1230 0.4399 32 1 1.0025 -4.8057 -0.9092 33 1 1.7706 -4.5334 -3.6131 34 1 0.0847 -3.9856 -3.4514 35 1 -0.5213 -6.1581 -2.4203 36 1 1.1647 -6.7053 -2.5822 37 1 -0.6869 -8.2544 -5.4563 38 1 -1.4131 -7.9345 -3.8627 39 1 0.2260 -8.6199 -3.9728 40 1 2.2024 -6.6223 -4.7609 41 1 4.4799 -6.5162 -7.1958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725010751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:06 Heat of formation + Delta-G solvation = 31.057872 kcal Electronic energy + Delta-G solvation = -21492.610617 eV Core-core repulsion = 18215.894407 eV Total energy + Delta-G solvation = -3276.716210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20663 -39.60031 -36.70456 -34.53994 -34.09581 -32.31901 -31.82774 -29.77900 -28.54435 -27.51702 -26.71995 -23.92095 -22.78066 -21.48657 -21.05243 -20.06643 -19.58569 -17.67866 -17.32210 -17.16548 -15.82460 -15.59042 -15.12510 -14.99685 -14.47393 -14.09827 -13.81146 -13.71561 -13.52752 -13.24663 -13.07988 -12.76081 -12.55250 -12.48594 -12.44819 -12.10548 -11.61258 -11.17270 -10.97456 -10.78136 -10.69586 -10.45065 -10.29505 -10.03826 -10.01012 -9.67176 -9.48913 -9.04805 -8.91156 -8.37103 -6.99000 -5.77888 -3.06986 1.87313 2.43313 2.50643 3.12075 3.20042 3.44352 3.49267 3.49682 4.35303 4.39660 4.47483 4.58735 4.62639 4.69919 5.18099 5.18572 5.30491 5.31795 5.38963 5.50637 5.60488 5.64700 5.77186 5.80001 5.98160 6.10030 6.17932 6.24274 6.31018 6.35765 6.53129 6.61996 6.70663 6.80503 7.00544 7.04233 7.39552 7.68953 8.05483 8.09286 8.40366 9.51861 10.07577 10.41919 11.44629 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.003464 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.582438 B = 8080.719585 C = 8918.627231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.217 3.783 3 N -0.493 5.493 4 C -0.028 4.028 5 C -0.050 4.050 6 N -0.442 5.442 7 C 0.085 3.915 8 C 0.488 3.512 9 O -0.514 6.514 10 N -0.723 5.723 11 C 0.122 3.878 12 C -0.132 4.132 13 C 0.174 3.826 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.398 0.602 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.046 0.954 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 5.062 19.147 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.045 4.045 3 N -0.213 5.213 4 C -0.175 4.175 5 C -0.181 4.181 6 N -0.125 5.125 7 C -0.043 4.043 8 C 0.270 3.730 9 O -0.388 6.388 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.171 4.171 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.366 5.366 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.187 0.813 29 H 0.191 0.809 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.231 0.769 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.345 6.342 18.270 20.353 hybrid contribution 0.770 -1.339 -0.667 1.682 sum -5.575 5.003 17.602 19.130 Atomic orbital electron populations 1.20169 0.85214 1.04287 1.02988 1.23221 0.95588 0.81175 1.04490 1.70228 1.02350 1.28075 1.20597 1.22221 0.94752 0.92708 1.07801 1.22662 0.86707 0.97002 1.11774 1.44830 1.06834 1.05850 1.55029 1.21689 1.04037 0.81990 0.96540 1.20655 0.78532 0.82876 0.90889 1.90841 1.50132 1.52680 1.45185 1.46065 1.67978 1.12730 1.10803 1.21511 1.02660 0.95103 0.80763 1.22066 1.00795 0.94597 0.99597 1.20148 0.90294 0.94199 0.88979 0.93291 1.22429 0.98798 0.99841 1.01309 1.42442 1.02406 1.87601 1.04132 1.19176 0.92680 1.42130 0.83224 0.91243 1.24719 0.95324 1.02755 0.97917 1.69636 0.96788 1.57082 1.34608 0.86295 0.76493 0.77943 0.85620 1.21212 1.21703 1.21304 0.90300 0.89058 0.91087 0.81329 0.80940 0.86238 0.85981 0.76890 0.89593 0.91654 0.91849 0.91547 0.92668 0.94558 0.93521 0.78329 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.04 36.01 0.36 -0.29 16 2 C 0.22 2.87 7.88 -155.41 -1.23 1.64 16 3 N -0.49 -7.47 11.25 -10.81 -0.12 -7.59 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 C -0.05 -0.60 11.58 -16.56 -0.19 -0.79 16 6 N -0.44 -5.25 2.24 -115.19 -0.26 -5.51 16 7 C 0.08 0.71 6.15 -5.20 -0.03 0.68 16 8 C 0.49 6.24 7.90 -10.98 -0.09 6.16 16 9 O -0.51 -9.64 16.41 5.56 0.09 -9.55 16 10 N -0.72 -8.09 5.56 -60.29 -0.33 -8.42 16 11 C 0.12 1.86 5.56 -4.04 -0.02 1.84 16 12 C -0.13 -1.84 4.87 -26.73 -0.13 -1.97 16 13 C 0.17 3.19 2.89 -67.93 -0.20 3.00 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 16 N -0.72 -17.33 4.57 -53.43 -0.24 -17.57 16 17 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 28 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.12 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 33 H 0.09 1.71 7.75 -51.93 -0.40 1.30 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -36.60 351.05 -8.01 -44.60 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.50 Total: 8.41 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.63 Total: 0.17 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.24 Total: -66.42 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.60 -8.01 -44.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725010751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.660 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds