Wall clock time and date at job start Tue Mar 31 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39672 * 127.32179 * 2 1 4 4 N 1.30870 * 107.86087 * 179.83001 * 3 2 1 5 5 N 1.28438 * 110.92734 * 0.44948 * 4 3 2 6 6 C 1.46499 * 125.19206 * 179.73411 * 5 4 3 7 7 C 1.36603 * 109.62013 * 359.71768 * 5 4 3 8 8 C 1.47166 * 126.88415 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00182 * 92.52387 * 8 7 5 10 10 N 1.34772 * 119.99831 * 272.52792 * 8 7 5 11 11 C 1.46497 * 120.00023 * 185.32275 * 10 8 7 12 12 H 1.09004 * 109.47319 * 324.99480 * 11 10 8 13 13 C 1.53000 * 109.47404 * 84.99444 * 11 10 8 14 14 C 1.53002 * 109.47469 * 204.99702 * 11 10 8 15 15 H 1.09007 * 109.46930 * 64.99691 * 14 11 10 16 16 C 1.52998 * 109.46924 * 305.00007 * 14 11 10 17 17 N 1.46497 * 109.47393 * 184.99697 * 14 11 10 18 18 C 1.36936 * 120.00039 * 205.00196 * 17 14 11 19 19 H 1.07996 * 120.00195 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99788 * 180.02562 * 18 17 14 21 21 N 1.31614 * 120.00013 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99692 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46986 * 60.00245 * 22 20 18 24 24 H 1.48503 * 109.47000 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47389 * 299.99835 * 22 20 18 26 26 H 1.08997 * 109.47359 * 269.68509 * 1 2 3 27 27 H 1.09002 * 109.47183 * 149.68668 * 1 2 3 28 28 H 1.08998 * 109.47044 * 29.68267 * 1 2 3 29 29 H 1.07996 * 126.07034 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47190 * 274.76918 * 6 5 4 31 31 H 1.09001 * 109.47370 * 34.76478 * 6 5 4 32 32 H 1.08996 * 109.47819 * 154.76768 * 6 5 4 33 33 H 0.97003 * 120.00084 * 5.31593 * 10 8 7 34 34 H 1.08996 * 109.47542 * 300.00470 * 13 11 10 35 35 H 1.09009 * 109.46589 * 60.00165 * 13 11 10 36 36 H 1.08996 * 109.47633 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47132 * 60.00396 * 16 14 11 38 38 H 1.09006 * 109.46823 * 179.97438 * 16 14 11 39 39 H 1.08991 * 109.47474 * 299.99568 * 16 14 11 40 40 H 0.97000 * 119.99690 * 25.00331 * 17 14 11 41 41 H 0.97006 * 119.99930 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1107 0.0000 4 7 3.5877 0.6747 0.0037 5 7 3.6206 -0.6092 -0.0033 6 6 4.8390 -1.4226 -0.0074 7 6 2.3460 -1.1007 -0.0061 8 6 1.9454 -2.5168 -0.0144 9 8 1.7353 -3.0955 1.0345 10 7 1.8114 -3.1723 -1.1843 11 6 1.3009 -4.5453 -1.2003 12 1 1.6518 -5.0738 -0.3139 13 6 -0.2289 -4.5207 -1.2071 14 6 1.8049 -5.2624 -2.4544 15 1 2.8897 -5.3585 -2.4066 16 6 1.4187 -4.4535 -3.6943 17 7 1.1996 -6.5942 -2.5320 18 6 1.8322 -7.5947 -3.2204 19 1 2.7776 -7.4022 -3.7057 20 6 1.2583 -8.8565 -3.2944 21 7 0.1064 -9.0913 -2.7026 22 14 2.1209 -10.2212 -4.2341 23 1 3.4559 -10.4690 -3.6326 24 1 1.3082 -11.4620 -4.1622 25 1 2.2847 -9.8178 -5.6537 26 1 -0.3634 -0.0056 1.0276 27 1 -0.3634 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5089 29 1 2.0451 2.1456 -0.0004 30 1 5.1890 -1.5476 -1.0321 31 1 5.6098 -0.9254 0.5816 32 1 4.6251 -2.3998 0.4252 33 1 2.0529 -2.7349 -2.0157 34 1 -0.5881 -4.0099 -0.3137 35 1 -0.5798 -3.9922 -2.0936 36 1 -0.6088 -5.5422 -1.2194 37 1 1.8693 -3.4626 -3.6365 38 1 1.7783 -4.9641 -4.5877 39 1 0.3341 -4.3573 -3.7421 40 1 0.3506 -6.7672 -2.0959 41 1 -0.2948 -9.9729 -2.7547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725130846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:54 Heat of formation + Delta-G solvation = 52.343880 kcal Electronic energy + Delta-G solvation = -22262.069482 eV Core-core repulsion = 18986.276303 eV Total energy + Delta-G solvation = -3275.793179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.63744 -39.60188 -36.96926 -34.15441 -34.01101 -32.31668 -31.56525 -29.56871 -28.32371 -28.27011 -26.30501 -24.59802 -23.85424 -22.25404 -21.08235 -19.92647 -19.27540 -18.03983 -17.41027 -16.51895 -15.95480 -15.61302 -14.95371 -14.62239 -14.40349 -14.11723 -13.80534 -13.56719 -13.45633 -13.41572 -12.86934 -12.77580 -12.63730 -12.50346 -12.28032 -12.04144 -11.71350 -11.37043 -11.00058 -10.86289 -10.77134 -10.56242 -10.34637 -10.13393 -10.04557 -9.70973 -9.29764 -9.00751 -8.95415 -8.80744 -7.06403 -5.83143 -3.13150 1.54831 2.02621 2.51658 2.67855 3.22146 3.40238 3.45097 3.45885 4.29435 4.52408 4.58150 4.85284 4.89057 4.98524 5.14537 5.22565 5.26697 5.38565 5.47874 5.56064 5.57595 5.58445 5.73946 5.83023 5.93903 5.99245 6.06658 6.20860 6.31567 6.36150 6.41519 6.54461 6.58238 6.64069 6.79904 7.00114 7.47589 7.63191 7.90856 8.11920 8.35084 9.46505 10.00875 10.35764 11.39249 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.003719 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.917894 B = 7526.888600 C = 7903.272395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.159 4.159 3 C 0.003 3.997 4 N -0.287 5.287 5 N -0.274 5.274 6 C 0.085 3.915 7 C -0.028 4.028 8 C 0.589 3.411 9 O -0.522 6.522 10 N -0.704 5.704 11 C 0.133 3.867 12 H 0.092 0.908 13 C -0.160 4.160 14 C 0.169 3.831 15 H 0.051 0.949 16 C -0.169 4.169 17 N -0.719 5.719 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.185 0.815 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.387 0.613 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 19.015 3.204 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.170 4.170 3 C -0.174 4.174 4 N -0.117 5.117 5 N -0.062 5.062 6 C -0.055 4.055 7 C -0.157 4.157 8 C 0.370 3.630 9 O -0.396 6.396 10 N -0.356 5.356 11 C 0.029 3.971 12 H 0.110 0.890 13 C -0.219 4.219 14 C 0.058 3.942 15 H 0.069 0.931 16 C -0.229 4.229 17 N -0.362 5.362 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.202 0.798 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.223 0.777 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.224 18.676 3.880 19.778 hybrid contribution -0.456 -0.851 -0.836 1.277 sum 4.768 17.826 3.044 18.702 Atomic orbital electron populations 1.20128 0.88359 1.02714 1.02414 1.20679 0.96900 0.90659 1.08757 1.23424 0.87762 0.99844 1.06388 1.73116 1.24482 0.93306 1.20807 1.45534 1.05553 1.03705 1.51410 1.22212 0.83798 0.94768 1.04717 1.21495 0.85990 0.94978 1.13190 1.17025 0.77982 0.83403 0.84549 1.90858 1.50088 1.66987 1.31670 1.46291 1.65133 1.15916 1.08291 1.21464 0.94491 0.80011 1.01124 0.89039 1.22159 0.95002 1.03394 1.01297 1.20343 0.96672 0.86760 0.90393 0.93055 1.22548 1.01466 0.97770 1.01161 1.42433 1.25274 1.04889 1.63609 1.19166 1.03049 0.89717 1.25581 0.91175 1.24741 0.97258 0.97657 1.00953 1.69642 1.18053 1.22221 1.47942 0.86261 0.78587 0.81660 0.79605 1.21232 1.21648 1.21247 0.91191 0.91649 0.91045 0.79831 0.89371 0.88373 0.88660 0.76307 0.93051 0.92303 0.90207 0.94993 0.92278 0.92665 0.77727 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.00 0.37 -0.40 16 2 C -0.16 -1.90 6.30 -104.03 -0.65 -2.55 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.17 16 4 N -0.29 -3.56 11.90 30.59 0.36 -3.20 16 5 N -0.27 -3.32 3.75 -63.88 -0.24 -3.56 16 6 C 0.09 0.74 11.21 59.85 0.67 1.41 16 7 C -0.03 -0.37 6.71 -82.05 -0.55 -0.92 16 8 C 0.59 8.74 6.74 -12.64 -0.09 8.65 16 9 O -0.52 -9.68 16.74 5.26 0.09 -9.59 16 10 N -0.70 -9.59 4.98 -54.97 -0.27 -9.86 16 11 C 0.13 2.19 2.66 -67.93 -0.18 2.01 16 12 H 0.09 1.72 7.51 -51.93 -0.39 1.33 16 13 C -0.16 -2.58 9.00 37.16 0.33 -2.25 16 14 C 0.17 3.11 2.93 -67.93 -0.20 2.91 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 C -0.17 -2.73 9.01 37.16 0.33 -2.39 16 17 N -0.72 -17.01 5.03 -53.43 -0.27 -17.28 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 33 H 0.40 4.71 6.56 -40.82 -0.27 4.44 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.87 6.57 -51.92 -0.34 0.53 16 36 H 0.08 1.44 6.29 -51.93 -0.33 1.11 16 37 H 0.03 0.40 6.29 -51.93 -0.33 0.08 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 40 H 0.39 9.70 5.77 -40.82 -0.24 9.46 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -32.44 341.01 -5.88 -38.31 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.97 Total: 10.57 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.42 Total: -0.71 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.31 Total: -60.51 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.44 -5.88 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725130846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.658 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds