Wall clock time and date at job start Tue Mar 31 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39672 * 127.32179 * 2 1 4 4 N 1.30870 * 107.86087 * 179.83001 * 3 2 1 5 5 N 1.28438 * 110.92734 * 0.44948 * 4 3 2 6 6 C 1.46499 * 125.19206 * 179.73411 * 5 4 3 7 7 C 1.36603 * 109.62013 * 359.71768 * 5 4 3 8 8 C 1.47166 * 126.88415 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00182 * 92.52387 * 8 7 5 10 10 N 1.34772 * 119.99831 * 272.52792 * 8 7 5 11 11 C 1.46497 * 120.00023 * 185.32275 * 10 8 7 12 12 H 1.09004 * 109.47319 * 324.99480 * 11 10 8 13 13 C 1.53000 * 109.47404 * 84.99444 * 11 10 8 14 14 C 1.53002 * 109.47469 * 204.99702 * 11 10 8 15 15 H 1.09007 * 109.46930 * 64.99691 * 14 11 10 16 16 C 1.52998 * 109.46924 * 305.00007 * 14 11 10 17 17 N 1.46497 * 109.47393 * 184.99697 * 14 11 10 18 18 C 1.36936 * 120.00039 * 205.00196 * 17 14 11 19 19 H 1.07996 * 120.00195 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99788 * 180.02562 * 18 17 14 21 21 N 1.31614 * 120.00013 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99692 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46986 * 60.00245 * 22 20 18 24 24 H 1.48503 * 109.47000 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47389 * 299.99835 * 22 20 18 26 26 H 1.08997 * 109.47359 * 269.68509 * 1 2 3 27 27 H 1.09002 * 109.47183 * 149.68668 * 1 2 3 28 28 H 1.08998 * 109.47044 * 29.68267 * 1 2 3 29 29 H 1.07996 * 126.07034 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47190 * 274.76918 * 6 5 4 31 31 H 1.09001 * 109.47370 * 34.76478 * 6 5 4 32 32 H 1.08996 * 109.47819 * 154.76768 * 6 5 4 33 33 H 0.97003 * 120.00084 * 5.31593 * 10 8 7 34 34 H 1.08996 * 109.47542 * 300.00470 * 13 11 10 35 35 H 1.09009 * 109.46589 * 60.00165 * 13 11 10 36 36 H 1.08996 * 109.47633 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47132 * 60.00396 * 16 14 11 38 38 H 1.09006 * 109.46823 * 179.97438 * 16 14 11 39 39 H 1.08991 * 109.47474 * 299.99568 * 16 14 11 40 40 H 0.97000 * 119.99690 * 25.00331 * 17 14 11 41 41 H 0.97006 * 119.99930 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1107 0.0000 4 7 3.5877 0.6747 0.0037 5 7 3.6206 -0.6092 -0.0033 6 6 4.8390 -1.4226 -0.0074 7 6 2.3460 -1.1007 -0.0061 8 6 1.9454 -2.5168 -0.0144 9 8 1.7353 -3.0955 1.0345 10 7 1.8114 -3.1723 -1.1843 11 6 1.3009 -4.5453 -1.2003 12 1 1.6518 -5.0738 -0.3139 13 6 -0.2289 -4.5207 -1.2071 14 6 1.8049 -5.2624 -2.4544 15 1 2.8897 -5.3585 -2.4066 16 6 1.4187 -4.4535 -3.6943 17 7 1.1996 -6.5942 -2.5320 18 6 1.8322 -7.5947 -3.2204 19 1 2.7776 -7.4022 -3.7057 20 6 1.2583 -8.8565 -3.2944 21 7 0.1064 -9.0913 -2.7026 22 14 2.1209 -10.2212 -4.2341 23 1 3.4559 -10.4690 -3.6326 24 1 1.3082 -11.4620 -4.1622 25 1 2.2847 -9.8178 -5.6537 26 1 -0.3634 -0.0056 1.0276 27 1 -0.3634 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5089 29 1 2.0451 2.1456 -0.0004 30 1 5.1890 -1.5476 -1.0321 31 1 5.6098 -0.9254 0.5816 32 1 4.6251 -2.3998 0.4252 33 1 2.0529 -2.7349 -2.0157 34 1 -0.5881 -4.0099 -0.3137 35 1 -0.5798 -3.9922 -2.0936 36 1 -0.6088 -5.5422 -1.2194 37 1 1.8693 -3.4626 -3.6365 38 1 1.7783 -4.9641 -4.5877 39 1 0.3341 -4.3573 -3.7421 40 1 0.3506 -6.7672 -2.0959 41 1 -0.2948 -9.9729 -2.7547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725130846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:53 Heat of formation + Delta-G solvation = 29.728998 kcal Electronic energy + Delta-G solvation = -22263.050137 eV Core-core repulsion = 18986.276303 eV Total energy + Delta-G solvation = -3276.773834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -43.52999 -40.87690 -38.45693 -35.66664 -34.96117 -33.76630 -32.79815 -31.03029 -29.84072 -29.22126 -27.08329 -26.18955 -25.42899 -23.58670 -21.91982 -21.05043 -20.67720 -19.49789 -18.93469 -17.55386 -16.99649 -16.81234 -16.58831 -16.00058 -15.85735 -15.39048 -15.24131 -14.78444 -14.46537 -14.28817 -14.23354 -13.92681 -13.53767 -13.50254 -13.35412 -13.11928 -13.08595 -12.99053 -12.77656 -12.65944 -12.18201 -12.06228 -11.70893 -11.65504 -11.62580 -11.31745 -10.94451 -10.27458 -10.19614 -9.68364 -9.03354 -7.93087 -5.21977 0.60095 1.00738 1.49181 1.51431 1.57330 1.63183 1.68200 2.10824 2.58588 3.40747 3.46751 3.54813 3.85102 3.95963 4.04578 4.12445 4.20170 4.24401 4.30358 4.45015 4.51775 4.58000 4.65241 4.67131 4.83170 4.84786 4.93192 4.97711 5.10502 5.16000 5.19545 5.21935 5.39598 5.53464 5.59045 5.61672 5.75038 6.28710 6.31219 6.95309 7.03501 7.35873 8.09413 8.32600 9.30133 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.003719 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.917894 B = 7526.888600 C = 7903.272395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.161 4.161 3 C 0.004 3.996 4 N -0.299 5.299 5 N -0.277 5.277 6 C 0.077 3.923 7 C -0.053 4.053 8 C 0.599 3.401 9 O -0.564 6.564 10 N -0.687 5.687 11 C 0.148 3.852 12 H 0.065 0.935 13 C -0.152 4.152 14 C 0.167 3.833 15 H 0.050 0.950 16 C -0.159 4.159 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.078 0.922 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.277 1.277 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.217 0.783 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.413 0.587 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.377 0.623 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 21.224 2.225 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 C -0.173 4.173 4 N -0.130 5.130 5 N -0.065 5.065 6 C -0.062 4.062 7 C -0.181 4.181 8 C 0.382 3.618 9 O -0.441 6.441 10 N -0.340 5.340 11 C 0.043 3.957 12 H 0.083 0.917 13 C -0.210 4.210 14 C 0.058 3.942 15 H 0.068 0.932 16 C -0.219 4.219 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.265 4.265 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.203 1.203 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.233 0.767 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.211 0.789 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.142 20.945 2.864 22.014 hybrid contribution -0.676 -1.410 -0.491 1.639 sum 5.466 19.535 2.372 20.423 Atomic orbital electron populations 1.20205 0.87095 1.03643 1.02680 1.21049 0.97903 0.90480 1.07755 1.23981 0.86999 1.01098 1.05199 1.73119 1.25326 0.93380 1.21164 1.45801 1.05803 1.03815 1.51099 1.22456 0.83251 0.94251 1.06278 1.21331 0.87218 0.94066 1.15508 1.17167 0.76844 0.83935 0.83840 1.90840 1.51962 1.68141 1.33132 1.46015 1.64576 1.14628 1.08813 1.21040 0.94669 0.81046 0.98980 0.91726 1.22059 0.94540 1.02185 1.02239 1.20504 0.96250 0.85159 0.92272 0.93234 1.22370 1.01648 0.99146 0.98697 1.42622 1.25049 1.06528 1.63316 1.19568 1.02940 0.90339 1.24376 0.90423 1.25509 0.98205 1.00055 1.02735 1.69801 1.19744 1.22226 1.50110 0.85260 0.77464 0.78595 0.78715 1.20595 1.22495 1.20298 0.91192 0.92545 0.88317 0.76653 0.87423 0.86768 0.89466 0.74782 0.92721 0.90642 0.92506 0.91000 0.93716 0.92762 0.78870 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.28 71.23 0.73 -0.63 16 2 C -0.16 -3.49 6.30 -19.48 -0.12 -3.61 16 3 C 0.00 0.08 12.00 85.18 1.02 1.10 16 4 N -0.30 -6.75 11.90 -57.14 -0.68 -7.43 16 5 N -0.28 -6.22 3.75 -356.01 -1.33 -7.56 16 6 C 0.08 1.22 11.21 127.77 1.43 2.65 16 7 C -0.05 -1.32 6.71 40.79 0.27 -1.05 16 8 C 0.60 17.37 6.74 86.59 0.58 17.95 16 9 O -0.56 -21.12 16.74 -4.11 -0.07 -21.19 16 10 N -0.69 -17.84 4.98 -446.06 -2.22 -20.06 16 11 C 0.15 4.82 2.66 44.99 0.12 4.94 16 12 H 0.06 2.49 7.51 -2.38 -0.02 2.47 16 13 C -0.15 -4.86 9.00 71.98 0.65 -4.22 16 14 C 0.17 6.02 2.93 44.99 0.13 6.15 16 15 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 16 C -0.16 -4.79 9.01 71.98 0.65 -4.14 16 17 N -0.73 -34.95 5.03 -322.94 -1.63 -36.57 16 18 C -0.24 -12.80 9.93 84.03 0.83 -11.97 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 21 N -0.97 -58.10 13.06 21.65 0.28 -57.81 16 22 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.07 8.07 -2.39 -0.02 1.05 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 33 H 0.41 8.66 6.56 -92.71 -0.61 8.05 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.14 6.57 -2.38 -0.02 2.12 16 36 H 0.06 2.10 6.29 -2.39 -0.02 2.09 16 37 H 0.07 1.58 6.29 -2.39 -0.02 1.56 16 38 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 1.66 6.56 -2.39 -0.02 1.64 16 40 H 0.38 19.38 5.77 -92.71 -0.54 18.84 16 41 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -70.39 341.01 3.06 -67.33 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.09 Total: 32.58 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.77 Total: 3.60 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -5.58 Total: -129.43 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.07 Total: -21.19 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.39 3.06 -67.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725130846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.062 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds