Wall clock time and date at job start Tue Mar 31 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46681 * 2 1 4 4 N 1.33317 * 126.10596 * 269.99289 * 3 2 1 5 5 C 1.30860 * 109.68120 * 179.76620 * 4 3 2 6 6 N 1.34489 * 109.16784 * 0.39165 * 5 4 3 7 7 H 0.97001 * 126.47641 * 179.88992 * 6 5 4 8 8 C 1.36660 * 126.10707 * 89.99853 * 3 2 1 9 9 C 1.46767 * 126.84819 * 359.97438 * 8 3 2 10 10 O 1.21688 * 119.99702 * 359.97438 * 9 8 3 11 11 N 1.34771 * 120.00290 * 179.97438 * 9 8 3 12 12 C 1.46504 * 119.99961 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47267 * 35.00403 * 12 11 9 14 14 C 1.52998 * 109.46978 * 275.00083 * 12 11 9 15 15 C 1.53006 * 109.47067 * 155.00250 * 12 11 9 16 16 H 1.08994 * 109.47271 * 59.99635 * 15 12 11 17 17 C 1.53001 * 109.46640 * 300.00041 * 15 12 11 18 18 N 1.46495 * 109.47163 * 179.97438 * 15 12 11 19 19 C 1.36936 * 120.00177 * 204.99525 * 18 15 12 20 20 H 1.07996 * 119.99716 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00001 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00063 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47338 * 90.00260 * 23 21 19 25 25 H 1.48497 * 109.47268 * 210.00150 * 23 21 19 26 26 H 1.48498 * 109.47449 * 330.00206 * 23 21 19 27 27 H 1.09001 * 109.47671 * 299.99695 * 1 2 3 28 28 H 1.09001 * 109.47187 * 60.00294 * 1 2 3 29 29 H 1.09005 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47231 * 239.99979 * 2 1 3 31 31 H 1.08997 * 109.46747 * 119.99543 * 2 1 3 32 32 H 1.08005 * 125.41367 * 180.24024 * 5 4 3 33 33 H 0.96999 * 120.00017 * 0.02562 * 11 9 8 34 34 H 1.09008 * 109.47045 * 180.02562 * 14 12 11 35 35 H 1.09001 * 109.46841 * 299.99712 * 14 12 11 36 36 H 1.08998 * 109.47434 * 60.00070 * 14 12 11 37 37 H 1.09000 * 109.47382 * 299.99656 * 17 15 12 38 38 H 1.08996 * 109.47530 * 60.00358 * 17 15 12 39 39 H 1.09007 * 109.46815 * 179.97438 * 17 15 12 40 40 H 0.96999 * 119.99915 * 25.00018 * 18 15 12 41 41 H 0.97008 * 119.99915 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2942 2.1615 -1.0771 5 6 2.7077 3.3467 -0.7071 6 7 2.7339 3.4057 0.6362 7 1 3.0023 4.1665 1.1749 8 6 2.3006 2.1802 1.1041 9 6 2.1567 1.7748 2.5073 10 8 1.7606 0.6570 2.7801 11 7 2.4633 2.6404 3.4937 12 6 2.3191 2.2358 4.8944 13 1 2.5699 1.1799 4.9953 14 6 0.8744 2.4621 5.3444 15 6 3.2611 3.0693 5.7656 16 1 3.0103 4.1252 5.6647 17 6 4.7058 2.8430 5.3154 18 7 3.1165 2.6652 7.1662 19 6 3.4280 3.5449 8.1683 20 1 3.7799 4.5367 7.9261 21 6 3.2905 3.1621 9.4955 22 7 2.8611 1.9535 9.7907 23 14 3.7147 4.3624 10.8625 24 1 2.5077 5.1487 11.2231 25 1 4.1892 3.6105 12.0519 26 1 4.7846 5.2822 10.3993 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.9862 4.1489 -1.3744 33 1 2.7787 3.5315 3.2763 34 1 0.7672 2.1615 6.3867 35 1 0.6236 3.5181 5.2436 36 1 0.2032 1.8684 4.7238 37 1 4.9567 1.7871 5.4163 38 1 4.8131 3.1440 4.2734 39 1 5.3769 3.4371 5.9358 40 1 2.8001 1.7744 7.3838 41 1 2.7646 1.6861 10.7182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725132401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:33 Heat of formation + Delta-G solvation = -4.119446 kcal Electronic energy + Delta-G solvation = -22076.343275 eV Core-core repulsion = 18798.101662 eV Total energy + Delta-G solvation = -3278.241613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.21763 -40.64305 -38.26155 -35.84193 -35.04517 -33.68136 -32.92411 -31.22245 -30.17561 -29.74661 -25.93103 -25.51484 -24.29619 -23.50213 -22.16861 -21.61887 -20.56535 -19.69789 -19.29212 -17.36176 -17.04582 -16.60296 -16.53057 -15.77720 -15.64844 -15.28780 -15.26631 -14.92131 -14.78928 -14.65117 -14.32334 -14.09932 -13.49106 -13.29732 -13.22415 -12.95994 -12.72656 -12.62225 -12.39937 -12.30780 -12.15545 -11.96911 -11.74077 -11.49574 -11.45865 -11.00601 -10.99210 -10.86600 -10.24204 -9.50926 -9.02261 -7.92272 -5.21492 0.27953 1.49255 1.50248 1.58344 1.87212 1.88712 2.13656 2.26871 2.59166 3.42087 3.52703 3.70305 3.83042 3.99486 4.10555 4.18353 4.23500 4.33328 4.50429 4.55301 4.57340 4.68080 4.74790 4.78090 4.85488 4.92755 5.01752 5.08559 5.12427 5.26361 5.29527 5.31184 5.46056 5.49386 5.54531 5.56428 6.28311 6.35633 6.47439 6.95043 7.12267 7.35040 8.08089 8.31111 9.31147 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.003505 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.587193 B = 7987.728964 C = 8470.539611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.084 3.916 4 N -0.534 5.534 5 C 0.241 3.759 6 N -0.540 5.540 7 H 0.440 0.560 8 C -0.105 4.105 9 C 0.592 3.408 10 O -0.558 6.558 11 N -0.702 5.702 12 C 0.153 3.847 13 H 0.063 0.937 14 C -0.143 4.143 15 C 0.169 3.831 16 H 0.063 0.937 17 C -0.155 4.155 18 N -0.730 5.730 19 C -0.234 4.234 20 H 0.081 0.919 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.301 1.301 26 H -0.268 1.268 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 6.122 -22.324 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.050 4.050 4 N -0.254 5.254 5 C -0.043 4.043 6 N -0.146 5.146 7 H 0.282 0.718 8 C -0.221 4.221 9 C 0.380 3.620 10 O -0.436 6.436 11 N -0.353 5.353 12 C 0.047 3.953 13 H 0.081 0.919 14 C -0.202 4.202 15 C 0.060 3.940 16 H 0.081 0.919 17 C -0.214 4.214 18 N -0.371 5.371 19 C -0.366 4.366 20 H 0.099 0.901 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.216 1.216 25 H -0.228 1.228 26 H -0.192 1.192 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.280 0.720 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.204 0.796 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.664 5.234 -22.792 23.395 hybrid contribution 0.461 0.975 2.278 2.520 sum -0.203 6.209 -20.515 21.435 Atomic orbital electron populations 1.21537 0.93894 1.02350 1.00941 1.20030 0.96688 0.89145 1.03092 1.21177 0.99082 0.97364 0.87398 1.70132 1.20455 1.04222 1.30560 1.26107 0.98231 0.97648 0.82315 1.43257 1.49674 1.12598 1.09109 0.71784 1.20642 1.17619 0.90042 0.93821 1.17072 0.77102 0.84504 0.83338 1.90817 1.47924 1.21473 1.83432 1.45666 1.67526 1.16916 1.05206 1.20936 0.95642 0.99085 0.79612 0.91885 1.21932 0.95476 1.01790 1.00975 1.20554 0.92818 0.96979 0.83671 0.91918 1.22306 0.98250 1.00491 1.00397 1.42464 1.79436 1.14999 1.00168 1.19585 1.35046 0.95432 0.86522 0.90091 1.25520 1.03245 0.98305 0.99631 1.69826 1.54608 1.19964 1.17632 0.85188 0.77836 0.78066 0.78942 1.21553 1.22804 1.19243 0.94364 0.92482 0.91034 0.89951 0.90592 0.71999 0.75576 0.92826 0.91759 0.93267 0.94932 0.91004 0.93714 0.79611 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.05 -1.26 5.93 29.85 0.18 -1.08 16 3 C 0.08 2.09 6.40 41.96 0.27 2.36 16 4 N -0.53 -11.43 11.20 -187.59 -2.10 -13.53 16 5 C 0.24 2.93 13.00 180.33 2.35 5.27 16 6 N -0.54 -6.82 6.07 -188.04 -1.14 -7.96 16 7 H 0.44 2.26 8.32 -92.71 -0.77 1.49 16 8 C -0.11 -2.38 7.08 40.01 0.28 -2.10 16 9 C 0.59 16.50 7.75 86.47 0.67 17.17 16 10 O -0.56 -19.88 14.48 -4.31 -0.06 -19.94 16 11 N -0.70 -17.05 4.38 -446.41 -1.95 -19.01 16 12 C 0.15 4.93 2.21 44.99 0.10 5.03 16 13 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 14 C -0.14 -4.80 9.33 71.98 0.67 -4.13 16 15 C 0.17 5.96 2.52 44.99 0.11 6.08 16 16 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 17 C -0.15 -4.97 9.34 71.98 0.67 -4.30 16 18 N -0.73 -34.68 4.43 -322.95 -1.43 -36.11 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 22 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 23 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.15 6.48 -2.39 -0.02 2.14 16 32 H 0.26 0.22 8.06 -2.91 -0.02 0.19 16 33 H 0.41 6.87 7.63 -92.71 -0.71 6.16 16 34 H 0.05 2.11 7.44 -2.38 -0.02 2.10 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.73 7.45 -2.39 -0.02 1.71 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.37 19.64 7.58 -92.71 -0.70 18.94 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -72.98 343.26 1.81 -71.16 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.12 Total: 29.73 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 7.31 Total: 6.96 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -6.35 Total: -134.77 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.98 1.81 -71.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725132401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.044 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds