Wall clock time and date at job start Tue Mar 31 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47105 * 2 1 4 4 N 1.33325 * 126.10563 * 270.12927 * 3 2 1 5 5 C 1.30851 * 109.68472 * 180.27203 * 4 3 2 6 6 N 1.34502 * 109.16314 * 359.76363 * 5 4 3 7 7 H 0.97000 * 126.46961 * 179.97438 * 6 5 4 8 8 C 1.36657 * 126.10847 * 89.99936 * 3 2 1 9 9 C 1.46768 * 126.84584 * 0.02562 * 8 3 2 10 10 O 1.21683 * 119.99432 * 359.70947 * 9 8 3 11 11 N 1.34769 * 120.00258 * 179.70747 * 9 8 3 12 12 C 1.46501 * 120.00067 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47037 * 325.00011 * 12 11 9 14 14 C 1.53000 * 109.47290 * 84.99821 * 12 11 9 15 15 C 1.53001 * 109.47001 * 205.00101 * 12 11 9 16 16 H 1.09000 * 109.47570 * 64.99885 * 15 12 11 17 17 C 1.52998 * 109.47014 * 304.99538 * 15 12 11 18 18 N 1.46507 * 109.47045 * 185.00288 * 15 12 11 19 19 C 1.36935 * 119.99742 * 205.00075 * 18 15 12 20 20 H 1.07999 * 120.00083 * 359.97438 * 19 18 15 21 21 C 1.38817 * 119.99986 * 179.97438 * 19 18 15 22 22 N 1.31617 * 119.99464 * 0.27719 * 21 19 18 23 23 Si 1.86800 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46883 * 120.00276 * 23 21 19 26 26 H 1.48497 * 109.46870 * 240.00086 * 23 21 19 27 27 H 1.09004 * 109.47355 * 299.99740 * 1 2 3 28 28 H 1.08997 * 109.47756 * 59.99666 * 1 2 3 29 29 H 1.08996 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46787 * 240.00130 * 2 1 3 31 31 H 1.08997 * 109.47029 * 120.00172 * 2 1 3 32 32 H 1.07997 * 125.42034 * 179.73654 * 5 4 3 33 33 H 0.97007 * 120.00113 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.47015 * 60.00233 * 14 12 11 35 35 H 1.08998 * 109.47201 * 179.97438 * 14 12 11 36 36 H 1.09001 * 109.47470 * 300.00211 * 14 12 11 37 37 H 1.09000 * 109.47695 * 299.99933 * 17 15 12 38 38 H 1.09005 * 109.47240 * 60.00393 * 17 15 12 39 39 H 1.09005 * 109.47291 * 180.02562 * 17 15 12 40 40 H 0.96999 * 120.00180 * 24.99002 * 18 15 12 41 41 H 0.97001 * 120.00638 * 359.71685 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1623 -1.0772 5 6 2.7166 3.3435 -0.7073 6 7 2.7397 3.4035 0.6362 7 1 3.0133 4.1625 1.1748 8 6 2.3008 2.1801 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7580 0.6579 2.7799 11 7 2.4695 2.6381 3.4937 12 6 2.3273 2.2328 4.8943 13 1 1.4653 1.5736 4.9961 14 6 3.5900 1.4939 5.3421 15 6 2.1262 3.4738 5.7664 16 1 1.1812 3.9510 5.5070 17 6 3.2754 4.4555 5.5291 18 7 2.1036 3.0805 7.1775 19 6 1.4524 3.8607 8.0953 20 1 0.9559 4.7662 7.7790 21 6 1.4305 3.4879 9.4323 22 7 2.0402 2.3873 9.8185 23 14 0.5428 4.5527 10.6844 24 1 -0.0516 5.7294 10.0009 25 1 -0.5338 3.7613 11.3325 26 1 1.5075 5.0133 11.7150 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0034 4.1427 -1.3746 33 1 2.7886 3.5280 3.2763 34 1 4.4521 2.1531 5.2403 35 1 3.4844 1.1928 6.3843 36 1 3.7333 0.6098 4.7208 37 1 4.2205 3.9784 5.7886 38 1 3.2924 4.7482 4.4792 39 1 3.1324 5.3395 6.1507 40 1 2.5497 2.2674 7.4616 41 1 2.5014 1.8346 9.1684 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725132402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:35 Heat of formation + Delta-G solvation = -1.003535 kcal Electronic energy + Delta-G solvation = -22133.459733 eV Core-core repulsion = 18855.353236 eV Total energy + Delta-G solvation = -3278.106497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.26616 -40.78284 -38.56862 -36.07252 -35.16463 -33.78971 -32.93076 -31.13569 -29.82200 -29.78012 -26.13745 -25.70461 -24.68407 -23.68963 -22.35341 -21.07892 -20.55148 -19.80911 -19.52422 -17.50805 -17.25161 -16.68224 -16.42391 -16.10478 -15.86940 -15.57527 -15.28613 -15.21620 -14.87630 -14.71081 -14.36347 -14.06844 -13.53033 -13.33657 -13.32709 -13.14713 -12.70164 -12.44021 -12.37667 -12.07172 -12.00781 -11.85854 -11.83198 -11.51240 -11.29839 -11.05084 -10.98480 -10.91278 -10.32613 -9.56011 -9.16398 -8.39022 -5.34143 0.22388 1.58525 1.69743 1.80299 1.81614 1.84057 2.07584 2.20565 2.71516 3.39942 3.48462 3.65693 3.73625 3.79574 3.93559 4.05973 4.18392 4.19589 4.45553 4.46688 4.51553 4.54719 4.64729 4.72473 4.74226 4.80676 4.89469 5.05083 5.05871 5.10748 5.21720 5.27228 5.35783 5.49452 5.50840 5.60731 6.29041 6.40420 6.49439 6.90485 7.03244 7.08859 7.97999 8.08300 9.12724 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.003542 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.332997 B = 7903.038912 C = 8226.966524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.087 3.913 4 N -0.533 5.533 5 C 0.243 3.757 6 N -0.541 5.541 7 H 0.439 0.561 8 C -0.108 4.108 9 C 0.591 3.409 10 O -0.558 6.558 11 N -0.704 5.704 12 C 0.152 3.848 13 H 0.060 0.940 14 C -0.150 4.150 15 C 0.171 3.829 16 H 0.044 0.956 17 C -0.157 4.157 18 N -0.745 5.745 19 C -0.328 4.328 20 H 0.069 0.931 21 C -0.104 4.104 22 N -0.976 5.976 23 Si 1.131 2.869 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.291 1.291 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.266 0.734 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.363 0.637 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 5.134 -22.626 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.048 4.048 4 N -0.253 5.253 5 C -0.041 4.041 6 N -0.147 5.147 7 H 0.281 0.719 8 C -0.224 4.224 9 C 0.379 3.621 10 O -0.436 6.436 11 N -0.357 5.357 12 C 0.046 3.954 13 H 0.078 0.922 14 C -0.209 4.209 15 C 0.062 3.938 16 H 0.062 0.938 17 C -0.217 4.217 18 N -0.390 5.390 19 C -0.460 4.460 20 H 0.087 0.913 21 C -0.295 4.295 22 N -0.624 5.624 23 Si 0.956 3.044 24 H -0.195 1.195 25 H -0.222 1.222 26 H -0.218 1.218 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.281 0.719 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.197 0.803 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.502 4.457 -21.665 22.260 hybrid contribution 0.915 0.383 -0.189 1.009 sum 3.416 4.840 -21.853 22.642 Atomic orbital electron populations 1.21544 0.93998 1.02388 1.00892 1.20035 0.96598 0.89105 1.03187 1.21187 0.98923 0.97329 0.87347 1.70138 1.20334 1.04307 1.30482 1.26139 0.98013 0.97707 0.82242 1.43263 1.49574 1.12742 1.09165 0.71857 1.20619 1.17886 0.90126 0.93741 1.17129 0.76969 0.84592 0.83446 1.90815 1.47869 1.21451 1.83468 1.45822 1.67534 1.17220 1.05131 1.20914 0.98317 0.96347 0.79831 0.92176 1.22045 0.97725 1.00389 1.00718 1.20464 0.97369 0.92626 0.83384 0.93764 1.22347 0.98988 0.99465 1.00881 1.42653 1.65215 1.27973 1.03133 1.20407 1.29045 1.05226 0.91277 0.91339 1.27137 1.02529 1.00866 0.98954 1.70932 1.39035 1.16115 1.36359 0.82564 0.74717 0.73604 0.73469 1.19515 1.22151 1.21822 0.94580 0.92420 0.90956 0.89745 0.90551 0.71872 0.75477 0.90779 0.93018 0.92636 0.92887 0.90366 0.93826 0.80273 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.05 -1.25 5.93 29.85 0.18 -1.08 16 3 C 0.09 2.15 6.40 41.96 0.27 2.42 16 4 N -0.53 -11.38 11.20 -187.59 -2.10 -13.48 16 5 C 0.24 2.95 13.01 180.33 2.35 5.30 16 6 N -0.54 -6.96 6.07 -188.05 -1.14 -8.11 16 7 H 0.44 2.40 8.32 -92.71 -0.77 1.63 16 8 C -0.11 -2.47 7.08 40.01 0.28 -2.19 16 9 C 0.59 16.78 7.75 86.47 0.67 17.45 16 10 O -0.56 -20.10 14.48 -4.29 -0.06 -20.16 16 11 N -0.70 -17.62 4.98 -446.43 -2.23 -19.84 16 12 C 0.15 4.99 2.62 44.99 0.12 5.11 16 13 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 14 C -0.15 -4.85 9.00 71.98 0.65 -4.21 16 15 C 0.17 6.25 2.93 44.99 0.13 6.38 16 16 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 17 C -0.16 -4.63 9.01 71.98 0.65 -3.99 16 18 N -0.75 -36.04 5.03 -322.93 -1.62 -37.66 16 19 C -0.33 -17.90 9.93 84.04 0.83 -17.07 16 20 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 21 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 22 N -0.98 -60.65 13.70 21.65 0.30 -60.36 16 23 Si 1.13 51.46 29.92 68.60 2.05 53.51 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.15 6.48 -2.39 -0.02 2.13 16 32 H 0.27 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.41 7.24 5.82 -92.70 -0.54 6.70 16 34 H 0.07 2.11 6.57 -2.38 -0.02 2.09 16 35 H 0.05 1.90 6.29 -2.39 -0.02 1.88 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.59 6.57 -2.39 -0.02 1.57 16 38 H 0.08 1.52 6.29 -2.38 -0.02 1.51 16 39 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.36 18.46 4.60 -92.71 -0.43 18.03 16 41 H 0.24 15.14 6.77 -92.71 -0.63 14.51 16 Total: -1.00 -76.64 333.86 1.98 -74.66 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.52 Total: 31.05 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 7.30 Total: 0.38 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -6.80 Total: -139.45 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -76.64 1.98 -74.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725132402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.656 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds