Wall clock time and date at job start Tue Mar 31 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46995 * 2 1 4 4 N 1.33323 * 126.10582 * 270.12152 * 3 2 1 5 5 C 1.30852 * 109.68462 * 180.27668 * 4 3 2 6 6 N 1.34497 * 109.16302 * 359.75729 * 5 4 3 7 7 H 0.97003 * 126.47533 * 179.97438 * 6 5 4 8 8 C 1.36658 * 126.10598 * 89.99581 * 3 2 1 9 9 C 1.46761 * 126.84804 * 0.02562 * 8 3 2 10 10 O 1.21685 * 119.99767 * 255.89533 * 9 8 3 11 11 N 1.34770 * 120.00370 * 75.89414 * 9 8 3 12 12 C 1.46501 * 120.00109 * 355.35672 * 11 9 8 13 13 C 1.46500 * 120.00284 * 175.35691 * 11 9 8 14 14 C 1.52998 * 109.47190 * 89.99829 * 13 11 9 15 15 H 1.08999 * 109.47142 * 65.00104 * 14 13 11 16 16 C 1.53001 * 109.47293 * 185.00241 * 14 13 11 17 17 N 1.46494 * 109.47241 * 305.00201 * 14 13 11 18 18 C 1.36941 * 120.00015 * 155.00061 * 17 14 13 19 19 H 1.07996 * 120.00075 * 359.97438 * 18 17 14 20 20 C 1.38819 * 119.99819 * 180.02562 * 18 17 14 21 21 N 1.31616 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47350 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47078 * 120.00049 * 22 20 18 25 25 H 1.48499 * 109.47242 * 239.99809 * 22 20 18 26 26 H 1.09005 * 109.46688 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47296 * 299.99801 * 1 2 3 28 28 H 1.08994 * 109.47122 * 60.00436 * 1 2 3 29 29 H 1.08996 * 109.47797 * 240.00038 * 2 1 3 30 30 H 1.09000 * 109.47515 * 119.99526 * 2 1 3 31 31 H 1.08002 * 125.41848 * 179.74451 * 5 4 3 32 32 H 1.09005 * 109.47198 * 275.21539 * 12 11 9 33 33 H 1.09007 * 109.46826 * 35.20873 * 12 11 9 34 34 H 1.08996 * 109.47629 * 155.20834 * 12 11 9 35 35 H 1.08997 * 109.47513 * 209.99990 * 13 11 9 36 36 H 1.09000 * 109.47412 * 329.99959 * 13 11 9 37 37 H 1.08999 * 109.47138 * 59.99861 * 16 14 13 38 38 H 1.09001 * 109.47203 * 180.02562 * 16 14 13 39 39 H 1.09008 * 109.46766 * 299.99568 * 16 14 13 40 40 H 0.97003 * 119.99973 * 334.99886 * 17 14 13 41 41 H 0.96998 * 119.99714 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2920 2.1624 -1.0772 5 6 2.7167 3.3435 -0.7073 6 7 2.7396 3.4037 0.6362 7 1 3.0132 4.1626 1.1748 8 6 2.3006 2.1802 1.1041 9 6 2.1576 1.7744 2.5072 10 8 1.2164 2.1781 3.1644 11 7 3.0687 0.9548 3.0680 12 6 4.1445 0.3875 2.2513 13 6 2.9834 0.6311 4.4942 14 6 2.1205 -0.6182 4.6829 15 1 2.6143 -1.4738 4.2221 16 6 1.9282 -0.8843 6.1773 17 7 0.8149 -0.4098 4.0520 18 6 0.0780 -1.4849 3.6319 19 1 0.4596 -2.4863 3.7653 20 6 -1.1589 -1.2873 3.0337 21 7 -1.6237 -0.0668 2.8707 22 14 -2.1637 -2.7538 2.4600 23 1 -1.4240 -4.0070 2.7559 24 1 -3.4678 -2.7687 3.1703 25 1 -2.3980 -2.6515 0.9972 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.0035 4.1428 -1.3746 32 1 3.7870 -0.5150 1.7553 33 1 4.4541 1.1156 1.5015 34 1 4.9930 0.1397 2.8891 35 1 3.9836 0.4442 4.8849 36 1 2.5343 1.4672 5.0303 37 1 1.4345 -0.0287 6.6381 38 1 1.3139 -1.7746 6.3117 39 1 2.8997 -1.0395 6.6466 40 1 0.4723 0.4897 3.9319 41 1 -2.4879 0.0712 2.4523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725517237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:48 Heat of formation + Delta-G solvation = 15.713597 kcal Electronic energy + Delta-G solvation = -23796.656422 eV Core-core repulsion = 20519.274834 eV Total energy + Delta-G solvation = -3277.381587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.13519 -40.55089 -37.49072 -35.95546 -35.20392 -33.84053 -32.79007 -30.68841 -29.93386 -28.18846 -26.90468 -25.59023 -24.67912 -23.38600 -22.10164 -21.19744 -20.07737 -19.31397 -18.79651 -17.60770 -17.05430 -16.80254 -16.27837 -15.89677 -15.52408 -15.44781 -14.90020 -14.63095 -14.47392 -14.41920 -13.95038 -13.71308 -13.57141 -13.31840 -13.21020 -12.94966 -12.81915 -12.68144 -12.37244 -12.29510 -12.06015 -11.85276 -11.78062 -11.51719 -11.37774 -10.92322 -10.84605 -10.71267 -9.52236 -9.36750 -8.75155 -7.70916 -4.98296 0.76241 1.45422 1.47564 1.48155 1.54868 1.87631 2.08659 2.59742 2.65195 3.55869 3.59277 3.72575 4.03612 4.14015 4.22985 4.28469 4.34452 4.56057 4.57413 4.62187 4.65596 4.71007 4.76287 4.77045 4.89461 4.92007 5.00029 5.12549 5.15841 5.26199 5.32515 5.51963 5.57976 5.63727 5.71984 5.76005 6.39117 6.46286 6.49616 7.02531 7.23191 7.56730 8.39591 8.65454 9.48412 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.008493 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.904158 B = 3296.147205 C = 4501.951528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.031 4.031 3 C 0.056 3.944 4 N -0.527 5.527 5 C 0.221 3.779 6 N -0.537 5.537 7 H 0.437 0.563 8 C -0.078 4.078 9 C 0.595 3.405 10 O -0.553 6.553 11 N -0.591 5.591 12 C 0.083 3.917 13 C 0.115 3.885 14 C 0.143 3.857 15 H 0.047 0.953 16 C -0.153 4.153 17 N -0.734 5.734 18 C -0.229 4.229 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.937 3.063 23 H -0.271 1.271 24 H -0.304 1.304 25 H -0.295 1.295 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.387 0.613 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.677 6.171 -3.236 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.076 4.076 4 N -0.247 5.247 5 C -0.062 4.062 6 N -0.142 5.142 7 H 0.278 0.722 8 C -0.196 4.196 9 C 0.381 3.619 10 O -0.430 6.430 11 N -0.323 5.323 12 C -0.059 4.059 13 C -0.008 4.008 14 C 0.033 3.967 15 H 0.065 0.935 16 C -0.214 4.214 17 N -0.380 5.380 18 C -0.361 4.361 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.590 5.590 22 Si 0.769 3.231 23 H -0.195 1.195 24 H -0.232 1.232 25 H -0.223 1.223 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.280 0.720 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.225 0.775 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 17.067 5.942 -3.714 18.450 hybrid contribution -1.369 -0.042 0.703 1.540 sum 15.698 5.900 -3.011 17.038 Atomic orbital electron populations 1.21572 0.95415 1.00597 1.01324 1.19749 0.95228 0.89750 1.02188 1.20804 1.02187 0.97105 0.87487 1.69968 1.19796 1.04395 1.30573 1.25979 1.00395 0.97888 0.81987 1.43078 1.49943 1.12318 1.08897 0.72188 1.20474 1.14985 0.89795 0.94301 1.17071 0.81482 0.79116 0.84250 1.90814 1.30913 1.57735 1.63525 1.47572 1.27982 1.46430 1.10306 1.21924 0.89512 0.98519 0.95994 1.21957 1.01680 0.97292 0.79836 1.20965 0.86858 0.96200 0.92639 0.93528 1.22256 1.01217 1.00241 0.97668 1.43000 1.17538 1.06762 1.70681 1.19437 0.98591 0.88136 1.29980 0.91836 1.25124 0.99001 0.97200 1.03280 1.69891 1.19187 1.19706 1.50215 0.85615 0.79098 0.80975 0.77411 1.19522 1.23198 1.22307 0.94321 0.92512 0.94106 0.89983 0.91583 0.71987 0.93485 0.91170 0.87395 0.85607 0.92044 0.94653 0.94770 0.90215 0.77533 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 9.89 71.98 0.71 -5.34 16 2 C -0.03 -1.21 6.29 29.85 0.19 -1.02 16 3 C 0.06 2.02 6.20 41.97 0.26 2.28 16 4 N -0.53 -16.61 11.20 -187.58 -2.10 -18.72 16 5 C 0.22 4.76 13.01 180.33 2.35 7.11 16 6 N -0.54 -12.61 6.19 -188.05 -1.16 -13.78 16 7 H 0.44 7.15 8.96 -92.71 -0.83 6.32 16 8 C -0.08 -2.65 5.16 40.01 0.21 -2.45 16 9 C 0.59 23.22 6.56 86.47 0.57 23.79 16 10 O -0.55 -27.39 14.18 -4.30 -0.06 -27.45 16 11 N -0.59 -18.71 2.77 -851.41 -2.36 -21.07 16 12 C 0.08 1.92 9.93 127.77 1.27 3.19 16 13 C 0.12 3.53 5.18 86.38 0.45 3.97 16 14 C 0.14 5.46 3.20 44.99 0.14 5.61 16 15 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 16 C -0.15 -5.25 9.49 71.98 0.68 -4.57 16 17 N -0.73 -37.52 4.52 -322.95 -1.46 -38.98 16 18 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 19 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 20 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 21 N -0.94 -58.73 11.68 21.65 0.25 -58.48 16 22 Si 0.94 47.61 29.55 68.60 2.03 49.64 16 23 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 25 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 26 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.06 3.12 6.71 -2.39 -0.02 3.10 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.76 6.60 -2.39 -0.02 2.74 16 31 H 0.26 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.05 1.23 7.02 -2.38 -0.02 1.22 16 33 H 0.07 1.52 7.00 -2.38 -0.02 1.50 16 34 H 0.11 1.66 7.83 -2.39 -0.02 1.64 16 35 H 0.13 2.53 7.86 -2.39 -0.02 2.51 16 36 H 0.06 2.12 7.49 -2.39 -0.02 2.10 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.39 22.08 4.81 -92.71 -0.45 21.63 16 41 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -80.20 337.18 3.02 -77.18 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.23 Total: 33.65 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 8.12 Total: 18.01 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -6.84 Total: -151.02 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -80.20 3.02 -77.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725517237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.890 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds