Wall clock time and date at job start Tue Mar 31 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 N 1.46504 * 109.46995 * 119.99853 * 2 1 3 5 5 C 1.36932 * 119.99803 * 301.89931 * 4 2 1 6 6 H 1.08004 * 120.00252 * 324.85710 * 5 4 2 7 7 C 1.38814 * 119.99492 * 144.86428 * 5 4 2 8 8 N 1.31621 * 119.99925 * 157.16646 * 7 5 4 9 9 Si 1.86800 * 120.00261 * 337.16085 * 7 5 4 10 10 H 1.48497 * 109.46792 * 95.35540 * 9 7 5 11 11 H 1.48495 * 109.47186 * 215.35805 * 9 7 5 12 12 H 1.48502 * 109.46954 * 335.36115 * 9 7 5 13 13 C 1.46502 * 119.99800 * 121.90485 * 4 2 1 14 14 C 1.52996 * 109.47280 * 89.99687 * 13 4 2 15 15 C 1.53008 * 109.47131 * 179.97438 * 14 13 4 16 16 N 1.46496 * 109.47204 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99932 * 179.97438 * 16 15 14 18 18 O 1.21599 * 120.00011 * 359.97438 * 17 16 15 19 19 C 1.47426 * 119.99905 * 180.02562 * 17 16 15 20 20 C 1.41295 * 126.41720 * 0.02562 * 19 17 16 21 21 N 1.30446 * 108.02285 * 179.71920 * 20 19 17 22 22 N 1.39936 * 108.89636 * 0.41334 * 21 20 19 23 23 H 0.97000 * 125.75067 * 179.84936 * 22 21 20 24 24 C 1.34259 * 108.49314 * 359.57871 * 22 21 20 25 25 H 1.08999 * 109.46898 * 305.32844 * 1 2 3 26 26 H 1.08998 * 109.46975 * 65.33216 * 1 2 3 27 27 H 1.08999 * 109.46978 * 185.32803 * 1 2 3 28 28 H 1.09000 * 109.47153 * 240.00119 * 2 1 3 29 29 H 1.09000 * 109.47195 * 175.19107 * 3 2 1 30 30 H 1.09000 * 109.47052 * 295.18878 * 3 2 1 31 31 H 1.08993 * 109.47035 * 55.18472 * 3 2 1 32 32 H 0.96995 * 120.00140 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.46947 * 329.99684 * 13 4 2 34 34 H 1.09000 * 109.46749 * 210.00332 * 13 4 2 35 35 H 1.08996 * 109.47476 * 59.99959 * 14 13 4 36 36 H 1.09000 * 109.47150 * 299.99571 * 14 13 4 37 37 H 1.08996 * 109.46943 * 59.99671 * 15 14 13 38 38 H 1.09007 * 109.46913 * 300.00219 * 15 14 13 39 39 H 0.97004 * 119.99921 * 359.97438 * 16 15 14 40 40 H 1.08002 * 125.98515 * 0.02562 * 20 19 17 41 41 H 1.07998 * 126.29173 * 180.22471 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6557 -0.2458 2.4395 6 1 1.5323 0.8118 2.6199 7 6 1.4468 -1.1545 3.4679 8 7 1.5442 -0.7639 4.7211 9 14 1.0273 -2.9315 3.0735 10 1 2.2673 -3.7483 3.0905 11 1 0.0771 -3.4528 4.0886 12 1 0.4040 -3.0059 1.7277 13 6 2.8947 -1.8569 1.0622 14 6 4.3543 -1.3987 1.0432 15 6 5.2695 -2.6169 0.9038 16 7 6.6672 -2.1782 0.8862 17 6 7.6569 -3.0857 0.7708 18 8 7.3898 -4.2686 0.6819 19 6 9.0634 -2.6442 0.7537 20 6 9.5258 -1.3125 0.8491 21 7 10.8293 -1.3335 0.8027 22 7 11.2566 -2.6592 0.6676 23 1 12.1787 -2.9540 0.6072 24 6 10.1753 -3.4546 0.6417 25 1 -0.3633 0.5943 0.8384 26 1 -0.3633 0.4289 -0.9339 27 1 -0.3633 -1.0232 0.0954 28 1 1.8934 -0.5138 -0.8900 29 1 3.1266 1.4437 0.0862 30 1 1.7488 1.9309 -0.9299 31 1 1.6080 1.9806 0.8437 32 1 1.3979 -1.3986 5.4397 33 1 2.6655 -2.3787 0.1330 34 1 2.7359 -2.5294 1.9052 35 1 4.5835 -0.8769 1.9723 36 1 4.5130 -0.7263 0.2001 37 1 5.0405 -3.1391 -0.0251 38 1 5.1107 -3.2890 1.7472 39 1 6.8802 -1.2345 0.9576 40 1 8.9084 -0.4320 0.9486 41 1 10.1754 -4.5307 0.5498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732005290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:07 Heat of formation + Delta-G solvation = 27.031843 kcal Electronic energy + Delta-G solvation = -21691.031199 eV Core-core repulsion = 18414.140407 eV Total energy + Delta-G solvation = -3276.890791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31284 -40.18907 -38.72755 -36.32264 -34.28944 -33.62650 -32.67642 -31.52140 -30.55798 -27.75051 -27.10477 -25.26421 -23.61943 -22.99976 -22.53097 -21.13256 -20.95622 -19.58434 -18.35362 -17.34488 -17.04724 -16.88070 -16.53687 -16.29178 -15.76531 -15.53304 -15.17447 -14.84447 -14.68346 -14.65511 -14.03134 -13.95914 -13.81865 -13.48280 -13.26392 -12.86882 -12.60374 -12.54973 -12.30653 -12.25764 -12.10171 -11.96186 -11.65229 -11.36522 -11.15656 -10.95441 -10.85940 -10.51540 -10.18071 -9.74936 -8.71215 -8.11850 -5.44678 0.54903 1.13936 1.33217 1.44072 1.52983 1.78319 2.34546 2.46843 2.47438 3.12396 3.38937 3.65444 3.92300 4.10308 4.11658 4.22723 4.33349 4.39487 4.45111 4.57580 4.62343 4.72057 4.75376 4.79169 4.92780 4.99336 5.12339 5.19300 5.23272 5.31133 5.32069 5.43115 5.52878 5.61445 5.68204 6.04250 6.21707 6.29295 6.45558 6.66903 7.09195 7.30625 7.75991 8.15643 9.08353 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.003819 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.501974 B = 7329.413954 C = 7847.771640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 C -0.145 4.145 4 N -0.612 5.612 5 C -0.229 4.229 6 H 0.048 0.952 7 C -0.021 4.021 8 N -0.952 5.952 9 Si 0.930 3.070 10 H -0.281 1.281 11 H -0.318 1.318 12 H -0.258 1.258 13 C 0.133 3.867 14 C -0.127 4.127 15 C 0.129 3.871 16 N -0.713 5.713 17 C 0.589 3.411 18 O -0.596 6.596 19 C -0.320 4.320 20 C 0.089 3.911 21 N -0.320 5.320 22 N -0.450 5.450 23 H 0.460 0.540 24 C 0.148 3.852 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.258 0.742 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.413 0.587 40 H 0.212 0.788 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.384 -2.348 -13.036 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 C -0.203 4.203 4 N -0.335 5.335 5 C -0.360 4.360 6 H 0.066 0.934 7 C -0.216 4.216 8 N -0.597 5.597 9 Si 0.761 3.239 10 H -0.209 1.209 11 H -0.248 1.248 12 H -0.182 1.182 13 C 0.007 3.993 14 C -0.167 4.167 15 C 0.005 3.995 16 N -0.364 5.364 17 C 0.379 3.621 18 O -0.478 6.478 19 C -0.335 4.335 20 C -0.099 4.099 21 N -0.142 5.142 22 N -0.156 5.156 23 H 0.309 0.691 24 C -0.007 4.007 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.249 0.751 40 H 0.228 0.772 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 17.211 -2.462 -12.952 21.680 hybrid contribution -0.773 -1.088 0.788 1.550 sum 16.438 -3.550 -12.163 20.755 Atomic orbital electron populations 1.22080 0.97470 1.00322 1.00830 1.20698 0.92759 0.93049 0.88339 1.22052 1.00525 0.97148 1.00608 1.44411 1.53231 1.33655 1.02207 1.18538 1.39684 0.91665 0.86071 0.93398 1.25882 0.99856 1.00987 0.94898 1.69986 1.53699 1.36526 0.99505 0.86082 0.77299 0.83060 0.77473 1.20864 1.24803 1.18230 1.21177 0.89583 0.89357 0.99179 1.22131 0.95196 0.96791 1.02558 1.21201 0.79998 0.97115 1.01201 1.45716 1.05652 1.10851 1.74175 1.17617 0.84805 0.84863 0.74850 1.90738 1.85196 1.18421 1.53484 1.20282 0.93205 0.94539 1.25458 1.24484 0.91996 0.97719 0.95726 1.77138 1.13674 0.98037 1.25316 1.46259 1.09768 1.04138 1.55450 0.69144 1.23416 0.85590 0.99110 0.92599 0.94699 0.90801 0.94786 0.90213 0.93266 0.91011 0.95233 0.93320 0.91444 0.95514 0.92923 0.89723 0.91075 0.94063 0.75089 0.77164 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.04 71.98 0.65 -4.50 16 2 C 0.16 5.48 3.36 44.99 0.15 5.63 16 3 C -0.14 -4.62 9.11 71.98 0.66 -3.96 16 4 N -0.61 -26.48 2.06 -678.01 -1.40 -27.88 16 5 C -0.23 -12.30 8.74 84.03 0.73 -11.57 16 6 H 0.05 2.86 7.17 -2.91 -0.02 2.84 16 7 C -0.02 -1.19 5.31 84.86 0.45 -0.74 16 8 N -0.95 -59.08 13.97 21.65 0.30 -58.77 16 9 Si 0.93 46.41 24.97 68.60 1.71 48.13 16 10 H -0.28 -13.63 6.66 99.48 0.66 -12.97 16 11 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16 12 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.13 5.18 4.49 86.38 0.39 5.57 16 14 C -0.13 -4.12 5.65 30.60 0.17 -3.95 16 15 C 0.13 3.94 5.67 86.38 0.49 4.43 16 16 N -0.71 -18.36 5.55 -466.37 -2.59 -20.95 16 17 C 0.59 16.44 7.81 86.66 0.68 17.12 16 18 O -0.60 -21.06 16.90 -4.03 -0.07 -21.13 16 19 C -0.32 -6.77 6.13 -20.15 -0.12 -6.90 16 20 C 0.09 1.62 11.50 85.65 0.99 2.60 16 21 N -0.32 -6.00 12.63 -56.27 -0.71 -6.71 16 22 N -0.45 -5.81 7.29 -56.32 -0.41 -6.22 16 23 H 0.46 2.42 8.96 -213.43 -1.91 0.51 16 24 C 0.15 2.29 11.82 84.28 1.00 3.28 16 25 H 0.03 1.36 7.80 -2.39 -0.02 1.35 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 2.36 7.78 -2.39 -0.02 2.34 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.03 1.08 7.25 -2.39 -0.02 1.07 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 33 H 0.07 2.28 7.90 -2.38 -0.02 2.26 16 34 H 0.03 1.21 2.97 -2.39 -0.01 1.20 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.41 8.26 7.43 -92.71 -0.69 7.57 16 40 H 0.21 2.64 7.50 -2.91 -0.02 2.61 16 41 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.31 339.16 1.47 -73.84 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -1.60 Total: 12.69 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.23 Total: 7.02 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -4.81 Total: -120.54 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.07 Total: -21.13 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.71 Total: 48.13 kcal Total: -75.31 1.47 -73.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732005290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.867 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds