Wall clock time and date at job start Tue Mar 31 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47447 * 55.00060 * 3 2 1 5 5 C 1.52999 * 109.47534 * 174.99970 * 3 2 1 6 6 N 1.46502 * 109.47429 * 175.00044 * 5 3 2 7 7 C 1.34777 * 119.99962 * 179.97438 * 6 5 3 8 8 O 1.21576 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.47709 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31803 * 126.51660 * 0.15266 * 9 7 6 11 11 N 1.28474 * 110.07180 * 180.31720 * 10 9 7 12 12 H 0.96995 * 124.88329 * 179.69255 * 11 10 9 13 13 C 1.35027 * 110.22950 * 359.71446 * 11 10 9 14 14 C 1.50696 * 126.38589 * 180.02562 * 13 11 10 15 15 C 1.35368 * 107.22946 * 359.97438 * 13 11 10 16 16 C 1.50703 * 127.24821 * 180.02562 * 15 13 11 17 17 N 1.46494 * 109.47332 * 295.00062 * 3 2 1 18 18 C 1.36938 * 120.00182 * 84.99593 * 17 3 2 19 19 H 1.08001 * 119.99983 * 0.02562 * 18 17 3 20 20 C 1.38816 * 120.00476 * 180.02562 * 18 17 3 21 21 N 1.31615 * 120.00399 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99506 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47442 * 89.99978 * 22 20 18 24 24 H 1.48500 * 109.47015 * 209.99901 * 22 20 18 25 25 H 1.48504 * 109.47433 * 329.99666 * 22 20 18 26 26 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47280 * 299.99714 * 1 2 3 28 28 H 1.08994 * 109.46995 * 60.00100 * 1 2 3 29 29 H 1.08998 * 109.47280 * 240.00286 * 2 1 3 30 30 H 1.09003 * 109.47431 * 119.99502 * 2 1 3 31 31 H 1.09005 * 109.46735 * 54.99496 * 5 3 2 32 32 H 1.09004 * 109.47000 * 295.00017 * 5 3 2 33 33 H 0.96991 * 119.99848 * 0.02562 * 6 5 3 34 34 H 1.08995 * 109.47547 * 269.97337 * 14 13 11 35 35 H 1.09001 * 109.47570 * 29.97276 * 14 13 11 36 36 H 1.09005 * 109.47351 * 149.97561 * 14 13 11 37 37 H 1.09002 * 109.47152 * 90.00279 * 16 15 13 38 38 H 1.09001 * 109.46980 * 330.00380 * 16 15 13 39 39 H 1.09004 * 109.47113 * 210.00361 * 16 15 13 40 40 H 0.97001 * 120.00198 * 265.00085 * 17 3 2 41 41 H 0.97002 * 119.99947 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0060 7 6 5.3856 3.0632 0.0869 8 8 6.1652 2.1463 0.2588 9 6 5.8879 4.4471 -0.0333 10 7 5.1620 5.5317 -0.2175 11 7 5.9223 6.5652 -0.2830 12 1 5.6123 7.4742 -0.4191 13 6 7.2150 6.2040 -0.1357 14 6 8.4079 7.1246 -0.1524 15 6 7.2395 4.8608 0.0309 16 6 8.4517 3.9889 0.2349 17 7 1.6525 2.0975 -1.2517 18 6 0.4156 2.6735 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0481 3.2937 -2.5551 21 7 -1.1404 3.8477 -2.6674 22 14 1.2407 3.3420 -3.9920 23 1 1.0368 2.1436 -4.8450 24 1 0.9992 4.5678 -4.7947 25 1 2.6342 3.3530 -3.4788 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9954 0.8311 -0.6659 32 1 3.8499 1.0378 1.0961 33 1 3.4410 3.5484 -0.1308 34 1 8.7772 7.2225 -1.1732 35 1 8.1156 8.1050 0.2237 36 1 9.1940 6.7123 0.4803 37 1 8.6624 3.9033 1.3010 38 1 9.3087 4.4343 -0.2702 39 1 8.2606 2.9985 -0.1784 40 1 2.2719 2.1232 -1.9977 41 1 -1.3973 4.2808 -3.4965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732194240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:11 Heat of formation + Delta-G solvation = 33.468388 kcal Electronic energy + Delta-G solvation = -22095.254905 eV Core-core repulsion = 18818.643223 eV Total energy + Delta-G solvation = -3276.611682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = -1.27 seconds Orbital eigenvalues (eV) -42.73766 -39.12064 -36.78901 -33.96833 -33.37668 -32.54986 -32.21481 -30.23115 -28.85543 -27.82197 -26.17751 -24.48370 -22.96423 -22.03739 -20.23028 -20.00467 -19.57657 -17.71964 -17.59973 -16.56567 -16.04226 -15.49259 -15.35310 -14.35789 -14.15545 -13.97061 -13.73264 -13.25742 -13.20046 -13.02251 -12.90895 -12.79269 -12.71276 -12.46332 -12.38758 -12.03943 -11.52019 -11.11629 -10.95251 -10.75402 -10.67300 -10.36681 -10.26620 -9.96889 -9.75934 -9.45635 -9.34939 -8.94131 -8.75405 -8.63402 -7.30192 -5.78105 -3.13366 1.65733 2.01323 2.79194 3.37898 3.42761 3.45566 3.51869 3.62282 4.50534 4.52605 4.58869 4.78633 5.16412 5.18790 5.24724 5.31381 5.38382 5.48931 5.51717 5.65084 5.77305 5.83413 5.91637 5.92979 5.95502 6.10568 6.13744 6.32142 6.48244 6.52844 6.58412 6.62419 6.83582 6.94070 6.99025 7.32703 7.72761 7.98036 8.02341 8.40176 8.51326 9.18704 9.91413 10.10830 11.39656 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.005071 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.400590 B = 5520.509876 C = 6647.592592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.111 3.889 6 N -0.702 5.702 7 C 0.599 3.401 8 O -0.543 6.543 9 C -0.009 4.009 10 N -0.247 5.247 11 N -0.380 5.380 12 H 0.444 0.556 13 C 0.001 3.999 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.076 4.076 17 N -0.746 5.746 18 C -0.239 4.239 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.277 1.277 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.362 0.638 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.859 4.232 6.488 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.354 5.354 7 C 0.383 3.617 8 O -0.420 6.420 9 C -0.171 4.171 10 N -0.083 5.083 11 N -0.095 5.095 12 H 0.289 0.711 13 C -0.124 4.124 14 C -0.140 4.140 15 C -0.157 4.157 16 C -0.134 4.134 17 N -0.390 5.390 18 C -0.369 4.369 19 H 0.113 0.887 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.709 3.291 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.203 1.203 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.195 0.805 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.050 3.968 6.533 18.685 hybrid contribution 0.899 0.782 -1.278 1.747 sum 17.949 4.750 5.255 19.296 Atomic orbital electron populations 1.21780 0.95236 0.99674 1.03787 1.22032 0.97323 0.97795 1.00129 1.20552 0.89820 0.93010 0.90798 0.91944 1.21775 0.95603 0.82343 1.01584 1.45903 1.06855 1.11098 1.71536 1.16888 0.82547 0.85406 0.76897 1.90727 1.56253 1.44228 1.50766 1.21918 0.91937 0.93160 1.10038 1.73678 1.22708 0.93758 1.18154 1.43224 1.03981 1.09402 1.52864 0.71119 1.21192 0.87304 0.95336 1.08567 1.20309 0.93256 0.97023 1.03378 1.20097 0.95085 0.92406 1.08131 1.20163 0.92294 0.99231 1.01718 1.42827 1.16798 1.67640 1.11727 1.19057 0.90494 1.27542 0.99786 0.88738 1.24627 0.96330 1.00331 0.97515 1.69691 1.19340 1.42282 1.26656 0.86636 0.81351 0.77202 0.83870 1.21216 1.21980 1.20274 0.94874 0.93891 0.89351 0.92629 0.93500 0.91675 0.91208 0.74666 0.90454 0.91182 0.89646 0.91617 0.92231 0.89823 0.80495 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.18 37.16 0.34 -2.35 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.17 3.09 2.59 -67.93 -0.18 2.91 16 4 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 6 N -0.70 -12.50 5.38 -61.29 -0.33 -12.83 16 7 C 0.60 10.78 7.83 -12.39 -0.10 10.68 16 8 O -0.54 -10.46 15.11 5.30 0.08 -10.38 16 9 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 10 N -0.25 -3.86 11.92 33.42 0.40 -3.46 16 11 N -0.38 -4.36 6.83 33.50 0.23 -4.13 16 12 H 0.44 3.43 8.96 -190.44 -1.71 1.72 16 13 C 0.00 0.01 7.23 -82.21 -0.59 -0.58 16 14 C -0.08 -0.50 10.14 36.00 0.37 -0.14 16 15 C -0.15 -2.00 6.25 -104.40 -0.65 -2.65 16 16 C -0.08 -0.88 9.61 36.01 0.35 -0.54 16 17 N -0.75 -16.67 4.31 -53.42 -0.23 -16.90 16 18 C -0.24 -6.32 8.23 -15.06 -0.12 -6.44 16 19 H 0.09 2.67 7.55 -52.49 -0.40 2.27 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -28.50 13.97 55.49 0.78 -27.72 16 22 Si 0.88 22.05 27.74 -169.99 -4.71 17.34 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.94 5.99 -51.93 -0.31 1.63 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.42 7.80 7.86 -40.82 -0.32 7.48 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.46 7.98 -51.93 -0.41 0.04 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 39 H 0.08 1.14 6.70 -51.93 -0.35 0.79 16 40 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -32.91 338.90 -7.67 -40.58 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.54 Total: 12.66 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.45 Total: -0.25 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: 0.84 Total: -65.05 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.91 -7.67 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732194240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.050 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.27 seconds