Wall clock time and date at job start Tue Mar 31 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47447 * 55.00060 * 3 2 1 5 5 C 1.52999 * 109.47534 * 174.99970 * 3 2 1 6 6 N 1.46502 * 109.47429 * 175.00044 * 5 3 2 7 7 C 1.34777 * 119.99962 * 179.97438 * 6 5 3 8 8 O 1.21576 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.47709 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31803 * 126.51660 * 0.15266 * 9 7 6 11 11 N 1.28474 * 110.07180 * 180.31720 * 10 9 7 12 12 H 0.96995 * 124.88329 * 179.69255 * 11 10 9 13 13 C 1.35027 * 110.22950 * 359.71446 * 11 10 9 14 14 C 1.50696 * 126.38589 * 180.02562 * 13 11 10 15 15 C 1.35368 * 107.22946 * 359.97438 * 13 11 10 16 16 C 1.50703 * 127.24821 * 180.02562 * 15 13 11 17 17 N 1.46494 * 109.47332 * 295.00062 * 3 2 1 18 18 C 1.36938 * 120.00182 * 84.99593 * 17 3 2 19 19 H 1.08001 * 119.99983 * 0.02562 * 18 17 3 20 20 C 1.38816 * 120.00476 * 180.02562 * 18 17 3 21 21 N 1.31615 * 120.00399 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99506 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47442 * 89.99978 * 22 20 18 24 24 H 1.48500 * 109.47015 * 209.99901 * 22 20 18 25 25 H 1.48504 * 109.47433 * 329.99666 * 22 20 18 26 26 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47280 * 299.99714 * 1 2 3 28 28 H 1.08994 * 109.46995 * 60.00100 * 1 2 3 29 29 H 1.08998 * 109.47280 * 240.00286 * 2 1 3 30 30 H 1.09003 * 109.47431 * 119.99502 * 2 1 3 31 31 H 1.09005 * 109.46735 * 54.99496 * 5 3 2 32 32 H 1.09004 * 109.47000 * 295.00017 * 5 3 2 33 33 H 0.96991 * 119.99848 * 0.02562 * 6 5 3 34 34 H 1.08995 * 109.47547 * 269.97337 * 14 13 11 35 35 H 1.09001 * 109.47570 * 29.97276 * 14 13 11 36 36 H 1.09005 * 109.47351 * 149.97561 * 14 13 11 37 37 H 1.09002 * 109.47152 * 90.00279 * 16 15 13 38 38 H 1.09001 * 109.46980 * 330.00380 * 16 15 13 39 39 H 1.09004 * 109.47113 * 210.00361 * 16 15 13 40 40 H 0.97001 * 120.00198 * 265.00085 * 17 3 2 41 41 H 0.97002 * 119.99947 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0060 7 6 5.3856 3.0632 0.0869 8 8 6.1652 2.1463 0.2588 9 6 5.8879 4.4471 -0.0333 10 7 5.1620 5.5317 -0.2175 11 7 5.9223 6.5652 -0.2830 12 1 5.6123 7.4742 -0.4191 13 6 7.2150 6.2040 -0.1357 14 6 8.4079 7.1246 -0.1524 15 6 7.2395 4.8608 0.0309 16 6 8.4517 3.9889 0.2349 17 7 1.6525 2.0975 -1.2517 18 6 0.4156 2.6735 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0481 3.2937 -2.5551 21 7 -1.1404 3.8477 -2.6674 22 14 1.2407 3.3420 -3.9920 23 1 1.0368 2.1436 -4.8450 24 1 0.9992 4.5678 -4.7947 25 1 2.6342 3.3530 -3.4788 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9954 0.8311 -0.6659 32 1 3.8499 1.0378 1.0961 33 1 3.4410 3.5484 -0.1308 34 1 8.7772 7.2225 -1.1732 35 1 8.1156 8.1050 0.2237 36 1 9.1940 6.7123 0.4803 37 1 8.6624 3.9033 1.3010 38 1 9.3087 4.4343 -0.2702 39 1 8.2606 2.9985 -0.1784 40 1 2.2719 2.1232 -1.9977 41 1 -1.3973 4.2808 -3.4965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732194240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:08 Heat of formation + Delta-G solvation = 8.965653 kcal Electronic energy + Delta-G solvation = -22096.317423 eV Core-core repulsion = 18818.643223 eV Total energy + Delta-G solvation = -3277.674200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.72967 -40.50570 -38.38906 -35.37890 -34.44644 -34.15733 -33.39787 -32.08321 -30.01788 -28.99755 -27.01130 -25.94164 -24.72819 -23.42846 -21.76625 -21.05293 -20.87888 -19.59852 -18.56203 -17.89033 -17.21429 -16.94100 -16.82241 -16.05163 -15.67613 -15.24812 -14.81207 -14.67008 -14.56023 -14.41274 -14.06705 -13.96191 -13.85057 -13.60325 -13.11875 -13.01554 -12.95468 -12.90769 -12.88157 -12.32988 -12.14780 -11.90489 -11.79199 -11.60478 -11.41674 -11.13647 -10.92458 -10.43926 -10.01649 -9.64393 -9.30050 -7.97132 -5.28229 0.49828 1.08353 1.36979 1.38112 1.43843 1.89321 2.28468 2.34143 2.49517 3.34686 3.41727 3.58388 3.77426 3.87295 4.05615 4.27738 4.32883 4.37123 4.44493 4.56311 4.72350 4.78283 4.82154 4.90714 4.93231 5.03280 5.06876 5.10675 5.12070 5.19472 5.21467 5.42560 5.53226 5.56874 5.73783 5.85817 6.12590 6.25856 6.46154 6.86624 7.11402 7.14918 7.86825 8.05053 9.24112 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.005071 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.400590 B = 5520.509876 C = 6647.592592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.168 3.832 4 H 0.057 0.943 5 C 0.119 3.881 6 N -0.707 5.707 7 C 0.595 3.405 8 O -0.562 6.562 9 C -0.042 4.042 10 N -0.280 5.280 11 N -0.367 5.367 12 H 0.460 0.540 13 C 0.025 3.975 14 C -0.081 4.081 15 C -0.173 4.173 16 C -0.071 4.071 17 N -0.747 5.747 18 C -0.203 4.203 19 H 0.070 0.930 20 C -0.057 4.057 21 N -0.982 5.982 22 Si 0.940 3.060 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.263 1.263 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.410 0.590 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.361 0.639 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.673 4.580 6.991 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.059 3.941 4 H 0.075 0.925 5 C -0.005 4.005 6 N -0.357 5.357 7 C 0.381 3.619 8 O -0.440 6.440 9 C -0.202 4.202 10 N -0.117 5.117 11 N -0.084 5.084 12 H 0.307 0.693 13 C -0.102 4.102 14 C -0.139 4.139 15 C -0.183 4.183 16 C -0.128 4.128 17 N -0.390 5.390 18 C -0.334 4.334 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.633 5.633 22 Si 0.770 3.230 23 H -0.212 1.212 24 H -0.229 1.229 25 H -0.188 1.188 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.194 0.806 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.900 4.288 7.068 21.549 hybrid contribution 0.055 0.693 -1.306 1.480 sum 19.955 4.981 5.762 21.359 Atomic orbital electron populations 1.21692 0.96327 1.00514 1.01566 1.21947 0.96148 0.96590 1.01943 1.20718 0.91079 0.93630 0.88629 0.92495 1.21733 0.93951 0.82235 1.02620 1.45956 1.06929 1.11112 1.71742 1.17178 0.82253 0.86222 0.76278 1.90701 1.56522 1.45072 1.51729 1.21892 0.93495 0.92608 1.12181 1.73587 1.23942 0.94547 1.19603 1.43351 1.04261 1.09446 1.51341 0.69269 1.21833 0.88000 0.95078 1.05282 1.20535 0.91396 0.97094 1.04833 1.20465 0.94531 0.93955 1.09377 1.20139 0.92659 0.97785 1.02263 1.42828 1.15264 1.67712 1.13234 1.18983 0.91078 1.25048 0.98332 0.91192 1.25233 0.97846 1.01572 1.00229 1.69842 1.21533 1.44770 1.27173 0.85631 0.80025 0.76511 0.80839 1.21200 1.22925 1.18846 0.92569 0.93971 0.93587 0.92436 0.89973 0.91678 0.89286 0.75343 0.88890 0.88820 0.88290 0.91069 0.89262 0.92443 0.80563 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.18 71.98 0.66 -4.44 16 2 C -0.13 -4.01 5.61 30.59 0.17 -3.83 16 3 C 0.17 5.99 2.59 44.99 0.12 6.10 16 4 H 0.06 2.13 8.08 -2.38 -0.02 2.11 16 5 C 0.12 3.84 5.23 86.38 0.45 4.29 16 6 N -0.71 -24.90 5.38 -466.08 -2.51 -27.41 16 7 C 0.60 21.37 7.83 86.75 0.68 22.04 16 8 O -0.56 -21.56 15.11 -3.96 -0.06 -21.62 16 9 C -0.04 -1.37 7.13 42.46 0.30 -1.07 16 10 N -0.28 -8.56 11.92 -48.18 -0.57 -9.13 16 11 N -0.37 -7.74 6.83 -47.93 -0.33 -8.06 16 12 H 0.46 6.08 8.96 -219.99 -1.97 4.10 16 13 C 0.02 0.46 7.23 41.40 0.30 0.76 16 14 C -0.08 -0.65 10.14 71.23 0.72 0.07 16 15 C -0.17 -4.45 6.25 -19.72 -0.12 -4.58 16 16 C -0.07 -1.53 9.61 71.24 0.68 -0.84 16 17 N -0.75 -33.11 4.31 -322.94 -1.39 -34.50 16 18 C -0.20 -10.93 8.23 84.03 0.69 -10.23 16 19 H 0.07 4.08 7.55 -2.91 -0.02 4.06 16 20 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 21 N -0.98 -61.90 13.97 21.65 0.30 -61.60 16 22 Si 0.94 46.33 27.74 68.60 1.90 48.23 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 25 H -0.26 -12.19 6.52 99.48 0.65 -11.55 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.41 15.42 7.86 -92.72 -0.73 14.69 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.62 7.98 -2.38 -0.02 0.60 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 39 H 0.06 1.54 6.70 -2.38 -0.02 1.53 16 40 H 0.36 16.24 5.66 -92.71 -0.52 15.72 16 41 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -73.41 338.90 0.25 -73.16 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -2.22 Total: 35.52 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.12 Total: 5.42 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -4.50 Total: -140.70 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -73.41 0.25 -73.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732194240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.123 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds