Wall clock time and date at job start Tue Mar 31 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 H 1.09000 * 109.46765 * 304.99927 * 3 2 1 5 5 C 1.53000 * 109.47535 * 184.99826 * 3 2 1 6 6 N 1.46499 * 109.47459 * 184.99804 * 5 3 2 7 7 C 1.34774 * 120.00041 * 179.97438 * 6 5 3 8 8 O 1.21565 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.47714 * 119.99937 * 179.97438 * 7 6 5 10 10 N 1.31808 * 126.51616 * 0.28767 * 9 7 6 11 11 N 1.28466 * 110.06878 * 180.13029 * 10 9 7 12 12 C 1.46506 * 124.88382 * 179.88697 * 11 10 9 13 13 C 1.35037 * 110.23277 * 359.61520 * 11 10 9 14 14 C 1.35359 * 107.22753 * 0.23418 * 13 11 10 15 15 C 1.50702 * 127.24804 * 180.02562 * 14 13 11 16 16 N 1.46497 * 109.47049 * 64.99429 * 3 2 1 17 17 C 1.36936 * 120.00410 * 274.99753 * 16 3 2 18 18 H 1.08003 * 119.99870 * 0.02562 * 17 16 3 19 19 C 1.38814 * 120.00228 * 179.97438 * 17 16 3 20 20 N 1.31621 * 120.00134 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47554 * 89.99265 * 21 19 17 23 23 H 1.48507 * 109.46905 * 209.99710 * 21 19 17 24 24 H 1.48503 * 109.46938 * 329.99102 * 21 19 17 25 25 H 1.08997 * 109.47434 * 299.99962 * 1 2 3 26 26 H 1.09005 * 109.46932 * 60.00733 * 1 2 3 27 27 H 1.08999 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47434 * 240.00038 * 2 1 3 29 29 H 1.08996 * 109.47048 * 119.99490 * 2 1 3 30 30 H 1.09007 * 109.46677 * 64.99510 * 5 3 2 31 31 H 1.09000 * 109.46678 * 305.00317 * 5 3 2 32 32 H 0.97003 * 120.00035 * 0.02562 * 6 5 3 33 33 H 1.08999 * 109.46892 * 269.69565 * 12 11 10 34 34 H 1.09000 * 109.46803 * 29.68738 * 12 11 10 35 35 H 1.09000 * 109.47214 * 149.69531 * 12 11 10 36 36 H 1.08005 * 126.38330 * 180.24691 * 13 11 10 37 37 H 1.08996 * 109.47117 * 90.02219 * 15 14 13 38 38 H 1.09004 * 109.46965 * 210.02416 * 15 14 13 39 39 H 1.08994 * 109.47206 * 330.01955 * 15 14 13 40 40 H 0.97009 * 120.00060 * 95.00824 * 16 3 2 41 41 H 0.96997 * 119.99667 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1257 6 7 4.0630 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0858 8 8 6.1652 2.1463 -0.2576 9 6 5.8879 4.4470 0.0344 10 7 5.1625 5.5308 0.2256 11 7 5.9218 6.5657 0.2794 12 6 5.4532 7.9393 0.4794 13 6 7.2145 6.2046 0.1309 14 6 7.2396 4.8606 -0.0284 15 6 8.4520 3.9884 -0.2294 16 7 1.6523 2.0975 1.2517 17 6 0.4155 2.6735 1.3687 18 1 -0.2744 2.6446 0.5382 19 6 0.0480 3.2937 2.5549 20 7 -1.1410 3.8470 2.6675 21 14 1.2409 3.3431 3.9916 22 1 2.0761 4.5674 3.8997 23 1 0.4797 3.3575 5.2667 24 1 2.1150 2.1433 3.9505 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8498 1.0377 -1.0960 31 1 3.9953 0.8312 0.6660 32 1 3.4409 3.5484 0.1315 33 1 5.2535 8.3995 -0.4883 34 1 4.5385 7.9284 1.0721 35 1 6.2188 8.5118 1.0030 36 1 8.0691 6.8650 0.1382 37 1 8.8272 3.6588 0.7394 38 1 8.1791 3.1194 -0.8283 39 1 9.2266 4.5561 -0.7450 40 1 2.2718 2.1233 1.9978 41 1 -1.3976 4.2806 3.4963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732198705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:17 Heat of formation + Delta-G solvation = 23.814074 kcal Electronic energy + Delta-G solvation = -22166.359294 eV Core-core repulsion = 18889.328969 eV Total energy + Delta-G solvation = -3277.030324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.63014 -40.50334 -38.39444 -35.34114 -34.82336 -34.19626 -32.83767 -32.08229 -29.97769 -28.91460 -27.47553 -25.37627 -24.25655 -23.03603 -21.77290 -21.58682 -20.92431 -19.65266 -18.53976 -17.35721 -17.28740 -17.06562 -16.82026 -16.08623 -15.76921 -15.30574 -14.86361 -14.67385 -14.43882 -14.36494 -14.25790 -14.15257 -13.91876 -13.35726 -13.26849 -13.10447 -13.00041 -12.89986 -12.86913 -12.39968 -12.11198 -11.88912 -11.77811 -11.63036 -11.43258 -11.11062 -10.92182 -10.31735 -10.03657 -9.66683 -9.30196 -7.97265 -5.28271 0.53594 1.17015 1.36279 1.37712 1.43096 1.62366 2.25734 2.36502 2.49165 3.34123 3.39043 3.58166 3.86125 3.89431 4.03896 4.31249 4.35696 4.39508 4.43896 4.48024 4.55683 4.60248 4.67640 4.71932 4.81648 4.91977 5.05354 5.06856 5.11732 5.19329 5.22477 5.43046 5.52855 5.53661 5.73151 5.85475 5.93692 6.25765 6.45694 6.91135 7.11126 7.17353 7.86481 8.04790 9.23989 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.005560 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.757298 B = 5034.506502 C = 6276.439449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.167 3.833 4 H 0.058 0.942 5 C 0.119 3.881 6 N -0.708 5.708 7 C 0.596 3.404 8 O -0.564 6.564 9 C -0.053 4.053 10 N -0.288 5.288 11 N -0.280 5.280 12 C 0.075 3.925 13 C -0.005 4.005 14 C -0.172 4.172 15 C -0.071 4.071 16 N -0.747 5.747 17 C -0.203 4.203 18 H 0.070 0.930 19 C -0.057 4.057 20 N -0.981 5.981 21 Si 0.938 3.062 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.263 1.263 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.230 0.770 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.361 0.639 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 5.782 -6.757 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.059 3.941 4 H 0.076 0.924 5 C -0.005 4.005 6 N -0.358 5.358 7 C 0.382 3.618 8 O -0.442 6.442 9 C -0.211 4.211 10 N -0.126 5.126 11 N -0.069 5.069 12 C -0.063 4.063 13 C -0.148 4.148 14 C -0.182 4.182 15 C -0.128 4.128 16 N -0.390 5.390 17 C -0.333 4.333 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.633 5.633 21 Si 0.768 3.232 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.188 1.188 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.246 0.754 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.194 0.806 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.220 5.680 -6.796 20.259 hybrid contribution 0.346 0.278 1.248 1.325 sum 18.566 5.959 -5.548 20.273 Atomic orbital electron populations 1.21690 0.96261 1.00523 1.01574 1.21947 0.96204 0.96619 1.01872 1.20716 0.91077 0.93609 0.88657 0.92430 1.21717 0.93954 0.82266 1.02543 1.45955 1.06955 1.11048 1.71867 1.17193 0.82211 0.86243 0.76171 1.90693 1.56574 1.45100 1.51855 1.21917 0.93658 0.92527 1.13013 1.73577 1.24934 0.94371 1.19690 1.45810 1.04880 1.07872 1.48312 1.22614 1.03823 0.74423 1.05440 1.23279 0.89007 0.95842 1.06707 1.20748 0.94346 0.94695 1.08448 1.20117 0.92680 0.97907 1.02114 1.42834 1.15394 1.67715 1.13067 1.18980 0.91253 1.24760 0.98357 0.91164 1.25223 0.97831 1.01630 1.00156 1.69841 1.21472 1.44752 1.27210 0.85661 0.79056 0.78173 0.80303 1.21349 1.22784 1.18808 0.93584 0.93934 0.92561 0.89994 0.92563 0.89353 0.91790 0.75379 0.87840 0.89448 0.84787 0.75386 0.91588 0.92408 0.89017 0.80624 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.18 71.98 0.66 -4.45 16 2 C -0.13 -4.06 5.61 30.59 0.17 -3.89 16 3 C 0.17 6.05 2.59 44.99 0.12 6.16 16 4 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 5 C 0.12 3.92 5.23 86.38 0.45 4.37 16 6 N -0.71 -25.29 5.39 -466.10 -2.51 -27.80 16 7 C 0.60 21.78 7.82 86.75 0.68 22.46 16 8 O -0.56 -22.01 15.12 -3.92 -0.06 -22.07 16 9 C -0.05 -1.76 7.13 42.46 0.30 -1.46 16 10 N -0.29 -9.17 11.67 -48.17 -0.56 -9.73 16 11 N -0.28 -6.25 3.70 -369.44 -1.37 -7.62 16 12 C 0.08 0.90 11.31 127.77 1.44 2.35 16 13 C -0.01 -0.10 11.40 83.53 0.95 0.85 16 14 C -0.17 -4.47 6.25 -19.72 -0.12 -4.60 16 15 C -0.07 -1.55 9.93 71.24 0.71 -0.84 16 16 N -0.75 -33.32 4.31 -322.94 -1.39 -34.72 16 17 C -0.20 -10.90 8.24 84.03 0.69 -10.21 16 18 H 0.07 4.10 7.55 -2.91 -0.02 4.08 16 19 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 20 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 21 Si 0.94 46.40 27.74 68.60 1.90 48.30 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 24 H -0.26 -12.17 6.52 99.48 0.65 -11.52 16 25 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.41 15.63 7.86 -92.71 -0.73 14.90 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.13 0.53 8.13 -2.39 -0.02 0.51 16 36 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.55 6.72 -2.38 -0.02 1.54 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.36 16.38 5.66 -92.70 -0.52 15.85 16 41 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.11 340.59 2.57 -72.54 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.27 Total: 34.66 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.52 Total: 7.93 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -5.53 Total: -141.36 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.06 Total: -22.07 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -75.11 2.57 -72.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732198705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.356 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds