Wall clock time and date at job start Tue Mar 31 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30859 * 125.42069 * 2 1 4 4 C 1.33321 * 109.68430 * 179.97438 * 3 2 1 5 5 C 1.36662 * 107.78780 * 359.97438 * 4 3 2 6 6 C 1.46760 * 126.84221 * 179.97438 * 5 4 3 7 7 O 1.21686 * 119.99659 * 174.54230 * 6 5 4 8 8 N 1.34780 * 120.00476 * 354.54842 * 6 5 4 9 9 C 1.46495 * 120.00116 * 185.14014 * 8 6 5 10 10 H 1.08999 * 109.47497 * 324.99871 * 9 8 6 11 11 C 1.53001 * 109.46938 * 84.99985 * 9 8 6 12 12 C 1.53004 * 109.47278 * 204.99846 * 9 8 6 13 13 C 1.52998 * 109.46634 * 65.00124 * 12 9 8 14 14 N 1.46504 * 109.46837 * 180.02562 * 13 12 9 15 15 C 1.36937 * 120.00131 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99621 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00494 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99750 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47480 * 59.99604 * 19 17 15 21 21 H 1.48501 * 109.46973 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46935 * 299.99171 * 19 17 15 23 23 N 1.34499 * 125.41799 * 180.02562 * 2 1 3 24 24 C 1.46501 * 126.46989 * 359.96086 * 23 2 1 25 25 H 1.09000 * 109.47489 * 270.00252 * 1 2 3 26 26 H 1.09005 * 109.46997 * 30.00160 * 1 2 3 27 27 H 1.08999 * 109.47518 * 149.99595 * 1 2 3 28 28 H 1.08001 * 126.10309 * 180.26562 * 4 3 2 29 29 H 0.97007 * 119.99618 * 5.14090 * 8 6 5 30 30 H 1.09006 * 109.47017 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47446 * 300.00034 * 11 9 8 32 32 H 1.09003 * 109.47048 * 60.00143 * 11 9 8 33 33 H 1.08997 * 109.47191 * 184.99984 * 12 9 8 34 34 H 1.09000 * 109.46700 * 305.00246 * 12 9 8 35 35 H 1.08997 * 109.47217 * 299.99843 * 13 12 9 36 36 H 1.08993 * 109.47746 * 60.00354 * 13 12 9 37 37 H 0.97000 * 120.00052 * 0.02562 * 14 13 12 38 38 H 0.96998 * 120.00321 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47101 * 274.48955 * 24 23 2 40 40 H 1.08999 * 109.47068 * 34.49529 * 24 23 2 41 41 H 1.09000 * 109.47015 * 154.49536 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0006 5 6 3.5976 -0.6609 0.0015 6 6 4.8028 -1.4983 0.0019 7 8 4.7039 -2.7069 0.1030 8 7 6.0193 -0.9288 -0.1097 9 6 7.2139 -1.7691 -0.2227 10 1 7.0838 -2.6685 0.3791 11 6 7.4251 -2.1610 -1.6865 12 6 8.4332 -0.9922 0.2782 13 6 8.2779 -0.7085 1.7736 14 7 9.4450 0.0358 2.2532 15 6 9.5286 0.4044 3.5694 16 1 8.7342 0.1460 4.2540 17 6 10.6342 1.1102 4.0236 18 7 11.6025 1.4247 3.1895 19 14 10.7485 1.6123 5.8193 20 1 10.7207 0.3992 6.6754 21 1 12.0173 2.3495 6.0473 22 1 9.5988 2.4871 6.1628 23 7 2.2864 -1.0961 -0.0005 24 6 1.8310 -2.4885 -0.0003 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5139 28 1 4.3978 1.3721 0.0047 29 1 6.1036 0.0376 -0.1151 30 1 8.3138 -2.7866 -1.7706 31 1 6.5565 -2.7144 -2.0435 32 1 7.5552 -1.2615 -2.2883 33 1 9.3339 -1.5831 0.1122 34 1 8.5116 -0.0500 -0.2642 35 1 7.3772 -0.1176 1.9397 36 1 8.1994 -1.6507 2.3161 37 1 10.1582 0.2683 1.6383 38 1 12.3749 1.9182 3.5068 39 1 1.6422 -2.8089 1.0243 40 1 0.9127 -2.5705 -0.5818 41 1 2.5994 -3.1221 -0.4433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732720121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:48 Heat of formation + Delta-G solvation = 24.307696 kcal Electronic energy + Delta-G solvation = -21619.951299 eV Core-core repulsion = 18342.942380 eV Total energy + Delta-G solvation = -3277.008919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.43177 -39.53046 -36.55458 -34.56601 -34.11664 -32.52986 -31.66316 -30.63390 -27.92833 -27.83321 -26.94495 -24.10250 -23.20574 -21.69582 -20.98874 -20.38966 -19.90832 -17.91723 -17.00264 -16.50893 -16.37129 -15.88121 -14.94703 -14.57904 -14.50980 -14.02777 -13.77559 -13.61239 -13.53440 -13.42475 -13.28747 -13.07953 -12.83991 -12.70718 -12.64055 -12.40565 -11.88884 -11.21740 -11.02222 -10.78604 -10.66865 -10.58267 -10.47610 -10.06154 -9.93949 -9.86258 -9.68819 -9.11933 -8.85279 -8.59558 -6.91609 -5.75592 -3.04374 1.16374 2.27591 2.63820 3.26516 3.27840 3.45808 3.49839 3.51083 4.10294 4.45545 4.53044 4.58779 4.74196 4.88549 4.95324 5.08145 5.15960 5.19977 5.25651 5.29920 5.33671 5.50247 5.55831 5.69996 5.72945 5.89842 5.93589 6.01565 6.22353 6.25756 6.32860 6.33430 6.49637 6.81924 6.82669 6.86221 7.45470 7.71131 7.74036 8.13915 8.43547 9.54586 10.11997 10.46752 11.47281 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.003575 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.707977 B = 7830.049591 C = 8761.939804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.223 3.777 3 N -0.493 5.493 4 C 0.042 3.958 5 C -0.087 4.087 6 C 0.597 3.403 7 O -0.551 6.551 8 N -0.704 5.704 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.161 4.161 12 C -0.135 4.135 13 C 0.153 3.847 14 N -0.734 5.734 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 N -0.425 5.425 24 C 0.066 3.934 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.181 0.819 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.496 -6.499 -11.623 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 N -0.212 5.212 4 C -0.112 4.112 5 C -0.203 4.203 6 C 0.383 3.617 7 O -0.431 6.431 8 N -0.355 5.355 9 C 0.043 3.957 10 H 0.109 0.891 11 C -0.219 4.219 12 C -0.173 4.173 13 C 0.026 3.974 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 N -0.106 5.106 24 C -0.076 4.076 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.198 0.802 29 H 0.240 0.760 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.919 -6.744 -11.392 24.756 hybrid contribution 0.771 0.049 0.881 1.171 sum -20.148 -6.695 -10.511 23.691 Atomic orbital electron populations 1.20262 0.84439 1.04234 1.03910 1.23439 0.95916 0.81210 1.03363 1.70113 1.02196 1.28050 1.20868 1.22701 0.95223 0.91335 1.01966 1.20781 0.85327 0.94972 1.19237 1.16727 0.82202 0.86522 0.76221 1.90762 1.86834 1.14268 1.51232 1.45768 1.05258 1.10845 1.73623 1.21035 0.83444 0.94572 0.96660 0.89055 1.22173 1.02067 1.01692 0.95978 1.22073 0.96568 1.00533 0.98152 1.20638 0.91302 0.94888 0.90595 1.42350 1.20626 1.66220 1.08588 1.19190 1.03096 1.28737 0.86123 0.91305 1.24734 0.96983 1.01319 0.97911 1.69645 1.09910 1.44913 1.33858 0.86264 0.76836 0.78227 0.84856 1.21273 1.21652 1.21225 1.45057 1.05178 1.08273 1.52087 1.22275 1.02194 0.78987 1.04123 0.89709 0.88791 0.90645 0.80215 0.76021 0.91299 0.92608 0.92321 0.90045 0.91183 0.96331 0.96427 0.78303 0.93459 0.90092 0.89728 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.18 36.00 0.37 -0.08 16 2 C 0.22 2.45 7.88 -155.61 -1.23 1.23 16 3 N -0.49 -6.59 11.20 -10.58 -0.12 -6.71 16 4 C 0.04 0.54 11.37 -17.47 -0.20 0.34 16 5 C -0.09 -1.14 6.91 -82.15 -0.57 -1.71 16 6 C 0.60 8.41 7.74 -12.82 -0.10 8.31 16 7 O -0.55 -8.96 14.49 5.20 0.08 -8.88 16 8 N -0.70 -8.98 4.52 -55.09 -0.25 -9.23 16 9 C 0.15 1.95 2.62 -67.93 -0.18 1.77 16 10 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 11 C -0.16 -1.81 9.48 37.16 0.35 -1.45 16 12 C -0.14 -2.04 4.87 -26.73 -0.13 -2.17 16 13 C 0.15 3.07 6.15 -4.04 -0.02 3.04 16 14 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16 15 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 19 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 N -0.42 -4.86 3.17 -117.27 -0.37 -5.23 16 24 C 0.07 0.55 10.48 59.85 0.63 1.18 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.31 7.12 -51.93 -0.37 -0.06 16 28 H 0.18 1.88 7.47 -52.49 -0.39 1.49 16 29 H 0.40 4.57 7.55 -40.82 -0.31 4.27 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.38 7.75 -51.93 -0.40 -0.03 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.43 7.16 -51.93 -0.37 0.06 16 41 H 0.11 1.06 6.37 -51.93 -0.33 0.73 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -35.09 344.10 -7.67 -42.75 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.23 Total: 8.17 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.32 Total: 2.98 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.35 Total: -67.88 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.09 -7.67 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732720121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.059 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds