Wall clock time and date at job start Tue Mar 31 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39681 * 127.32104 * 2 1 4 4 N 1.30865 * 107.86361 * 179.82616 * 3 2 1 5 5 N 1.28445 * 110.92495 * 0.45012 * 4 3 2 6 6 C 1.46500 * 125.19236 * 179.73358 * 5 4 3 7 7 C 1.36607 * 109.61804 * 359.71382 * 5 4 3 8 8 C 1.47164 * 126.87934 * 179.97438 * 7 5 4 9 9 O 1.21630 * 120.00054 * 93.94782 * 8 7 5 10 10 N 1.34777 * 120.00069 * 273.94071 * 8 7 5 11 11 C 1.46501 * 120.00379 * 185.21003 * 10 8 7 12 12 H 1.08994 * 109.46608 * 34.99761 * 11 10 8 13 13 C 1.53001 * 109.46970 * 275.00612 * 11 10 8 14 14 C 1.52999 * 109.47375 * 155.00263 * 11 10 8 15 15 C 1.52999 * 109.46735 * 295.00240 * 14 11 10 16 16 N 1.46501 * 109.46855 * 180.02562 * 15 14 11 17 17 C 1.36939 * 120.00062 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99947 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99849 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99776 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00224 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47191 * 89.99287 * 21 19 17 23 23 H 1.48498 * 109.46894 * 209.99672 * 21 19 17 24 24 H 1.48505 * 109.46776 * 329.99704 * 21 19 17 25 25 H 1.09003 * 109.47232 * 269.68948 * 1 2 3 26 26 H 1.08995 * 109.47055 * 149.68838 * 1 2 3 27 27 H 1.09004 * 109.46957 * 29.68700 * 1 2 3 28 28 H 1.07998 * 126.06444 * 359.97036 * 3 2 1 29 29 H 1.08993 * 109.47152 * 274.64821 * 6 5 4 30 30 H 1.09001 * 109.46867 * 34.64410 * 6 5 4 31 31 H 1.09000 * 109.47103 * 154.64700 * 6 5 4 32 32 H 0.97005 * 119.99631 * 5.21568 * 10 8 7 33 33 H 1.09002 * 109.46974 * 299.99680 * 13 11 10 34 34 H 1.08995 * 109.47394 * 59.99354 * 13 11 10 35 35 H 1.08999 * 109.47146 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47010 * 54.99898 * 14 11 10 37 37 H 1.08998 * 109.47096 * 174.99999 * 14 11 10 38 38 H 1.09004 * 109.47093 * 299.99608 * 15 14 11 39 39 H 1.08998 * 109.47525 * 60.00022 * 15 14 11 40 40 H 0.97008 * 120.00098 * 359.97438 * 16 15 14 41 41 H 0.96996 * 120.00259 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5877 0.6749 0.0038 5 7 3.6206 -0.6091 -0.0032 6 6 4.8391 -1.4224 -0.0072 7 6 2.3460 -1.1006 -0.0059 8 6 1.9455 -2.5167 -0.0142 9 8 1.7104 -3.0883 1.0334 10 7 1.8392 -3.1801 -1.1825 11 6 1.3313 -4.5541 -1.2011 12 1 0.5645 -4.6683 -0.4350 13 6 2.4795 -5.5261 -0.9221 14 6 0.7292 -4.8568 -2.5747 15 6 -0.4963 -3.9692 -2.8011 16 7 -1.0732 -4.2594 -4.1160 17 6 -2.1855 -3.5826 -4.5402 18 1 -2.6377 -2.8352 -3.9052 19 6 -2.7318 -3.8573 -5.7864 20 7 -3.8006 -3.2064 -6.1943 21 14 -1.9502 -5.1506 -6.8845 22 1 -2.5597 -6.4746 -6.6010 23 1 -2.1787 -4.7949 -8.3080 24 1 -0.4906 -5.2102 -6.6172 25 1 -0.3634 -0.0056 1.0277 26 1 -0.3633 -0.8871 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 2.0450 2.1457 -0.0005 29 1 5.1879 -1.5493 -1.0320 30 1 5.6105 -0.9241 0.5801 31 1 4.6256 -2.3990 0.4275 32 1 2.0990 -2.7478 -2.0111 33 1 3.2465 -5.4118 -1.6882 34 1 2.9085 -5.3104 0.0564 35 1 2.1016 -6.5484 -0.9355 36 1 1.4705 -4.6570 -3.3484 37 1 0.4320 -5.9046 -2.6182 38 1 -1.2376 -4.1690 -2.0273 39 1 -0.1991 -2.9214 -2.7575 40 1 -0.6673 -4.9310 -4.6863 41 1 -4.1826 -3.3986 -7.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732723897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:24 Heat of formation + Delta-G solvation = 47.422920 kcal Electronic energy + Delta-G solvation = -22023.730690 eV Core-core repulsion = 18747.724122 eV Total energy + Delta-G solvation = -3276.006568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -42.63528 -39.71602 -36.71221 -34.56766 -34.14961 -32.50644 -31.68501 -30.80372 -28.49590 -28.29527 -26.29652 -24.26192 -23.22795 -21.40972 -21.10187 -20.80641 -20.02638 -18.11565 -17.52607 -16.80094 -16.03702 -15.90187 -15.02035 -14.66403 -14.47743 -14.14215 -13.90221 -13.54461 -13.51285 -13.46138 -13.41069 -12.83206 -12.65622 -12.60583 -12.55954 -12.20254 -12.16119 -11.58560 -11.31925 -10.97197 -10.81532 -10.73143 -10.59804 -10.21724 -10.18184 -9.61947 -9.31056 -9.23213 -8.92040 -8.77582 -7.26841 -5.79040 -3.15184 1.53314 1.95989 2.54471 2.57276 3.09856 3.33954 3.36707 3.42639 4.24430 4.43930 4.56304 4.70569 4.75829 4.88439 5.02069 5.03573 5.06226 5.15129 5.29164 5.44461 5.51492 5.52885 5.57000 5.69910 5.72511 5.82910 5.85537 5.96729 6.06012 6.06965 6.11325 6.30786 6.46725 6.57879 6.65244 6.68598 7.29233 7.90637 7.95531 7.96861 8.39666 9.18417 9.90585 10.09926 11.39379 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.004195 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.072131 B = 6672.236272 C = 7465.674484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.149 4.149 3 C 0.005 3.995 4 N -0.286 5.286 5 N -0.277 5.277 6 C 0.088 3.912 7 C -0.036 4.036 8 C 0.596 3.404 9 O -0.523 6.523 10 N -0.705 5.705 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.162 4.162 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.757 5.757 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.186 0.814 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.405 0.595 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.615 1.998 12.450 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.159 4.159 3 C -0.172 4.172 4 N -0.116 5.116 5 N -0.065 5.065 6 C -0.052 4.052 7 C -0.164 4.164 8 C 0.378 3.622 9 O -0.398 6.398 10 N -0.357 5.357 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.178 4.178 15 C 0.030 3.970 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.203 0.797 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.240 0.760 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.489 1.977 13.208 22.807 hybrid contribution -0.167 -0.888 -1.369 1.641 sum 18.322 1.089 11.838 21.841 Atomic orbital electron populations 1.20179 0.88010 1.03391 1.02402 1.20754 0.97092 0.90572 1.07504 1.23470 0.87662 1.00005 1.06096 1.73114 1.24546 0.93181 1.20775 1.45478 1.05351 1.03742 1.51947 1.22146 0.83992 0.94592 1.04506 1.21360 0.86040 0.94777 1.14179 1.16982 0.77636 0.83338 0.84243 1.90839 1.49520 1.67758 1.31675 1.46156 1.65210 1.15345 1.08972 1.21059 0.96113 0.79741 0.99022 0.88911 1.22170 0.98539 0.99418 1.01882 1.22133 0.98849 1.01875 0.94947 1.20625 0.91924 0.96154 0.88316 1.42710 1.33739 1.47556 1.16262 1.19058 1.01760 1.16178 1.00533 0.89229 1.24679 0.97550 0.99427 0.97459 1.69699 1.23292 1.44294 1.20849 0.86535 0.78852 0.82310 0.80717 1.21053 1.21714 1.20439 0.91148 0.91309 0.90711 0.79676 0.89574 0.88432 0.89012 0.76033 0.92480 0.92211 0.91245 0.91339 0.90013 0.95441 0.95517 0.80720 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.28 36.00 0.37 -0.59 16 2 C -0.15 -1.90 6.30 -104.03 -0.65 -2.55 16 3 C 0.01 0.06 12.00 -17.42 -0.21 -0.15 16 4 N -0.29 -3.60 11.90 30.59 0.36 -3.24 16 5 N -0.28 -3.23 3.75 -63.88 -0.24 -3.47 16 6 C 0.09 0.66 11.21 59.85 0.67 1.33 16 7 C -0.04 -0.46 6.71 -82.06 -0.55 -1.01 16 8 C 0.60 8.00 6.73 -12.64 -0.09 7.92 16 9 O -0.52 -8.59 16.77 5.25 0.09 -8.50 16 10 N -0.71 -8.24 4.52 -54.96 -0.25 -8.48 16 11 C 0.14 1.72 2.54 -67.93 -0.17 1.54 16 12 H 0.09 1.25 7.66 -51.93 -0.40 0.85 16 13 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 14 C -0.14 -1.87 4.87 -26.73 -0.13 -2.00 16 15 C 0.16 2.88 6.15 -4.04 -0.02 2.85 16 16 N -0.76 -17.57 5.41 -59.91 -0.32 -17.90 16 17 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 21 Si 0.89 21.79 27.74 -169.99 -4.71 17.07 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.64 7.66 -51.93 -0.40 0.25 16 32 H 0.40 4.32 8.59 -40.82 -0.35 3.96 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 40 H 0.36 8.08 5.53 -40.82 -0.23 7.85 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -34.93 348.08 -6.17 -41.10 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.43 Total: 7.52 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.33 Total: -61.52 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.93 -6.17 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732723897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.525 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds