Wall clock time and date at job start Tue Mar 31 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03420 * 2 1 4 4 N 1.30845 * 108.20154 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20320 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03747 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47098 * 305.02394 * 6 5 4 8 8 O 1.21276 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00387 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46947 * 325.00549 * 10 9 7 12 12 C 1.53004 * 109.46942 * 85.00112 * 10 9 7 13 13 C 1.52994 * 109.47496 * 205.00445 * 10 9 7 14 14 N 1.46504 * 109.47217 * 54.99612 * 13 10 9 15 15 C 1.46490 * 120.00243 * 270.00381 * 14 13 10 16 16 C 1.36944 * 119.99651 * 90.00190 * 14 13 10 17 17 H 1.07997 * 119.99709 * 20.38481 * 16 14 13 18 18 C 1.38807 * 119.99754 * 200.38298 * 16 14 13 19 19 N 1.31617 * 119.99993 * 15.00162 * 18 16 14 20 20 Si 1.86801 * 119.99849 * 195.00310 * 18 16 14 21 21 H 1.48507 * 109.46867 * 85.00257 * 20 18 16 22 22 H 1.48496 * 109.47169 * 205.00097 * 20 18 16 23 23 H 1.48497 * 109.47084 * 325.00643 * 20 18 16 24 24 C 1.34957 * 107.92915 * 359.75466 * 5 4 3 25 25 H 1.09001 * 109.47210 * 90.03046 * 1 2 3 26 26 H 1.08998 * 109.47296 * 330.02369 * 1 2 3 27 27 H 1.09010 * 109.46885 * 210.02590 * 1 2 3 28 28 H 1.07996 * 125.90031 * 359.95431 * 3 2 1 29 29 H 1.09008 * 109.46806 * 65.02576 * 6 5 4 30 30 H 1.08997 * 109.47121 * 185.02246 * 6 5 4 31 31 H 0.97010 * 119.99737 * 0.02562 * 9 7 6 32 32 H 1.08994 * 109.47125 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.46744 * 300.00340 * 12 10 9 34 34 H 1.09002 * 109.46943 * 60.00434 * 12 10 9 35 35 H 1.08997 * 109.47395 * 174.99962 * 13 10 9 36 36 H 1.09001 * 109.47250 * 294.99918 * 13 10 9 37 37 H 1.08999 * 109.47869 * 95.12762 * 15 14 13 38 38 H 1.09001 * 109.47337 * 215.12553 * 15 14 13 39 39 H 1.09006 * 109.47397 * 335.12192 * 15 14 13 40 40 H 0.97012 * 119.99730 * 180.02562 * 19 18 16 41 41 H 1.07999 * 126.13012 * 180.24055 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1311 0.0000 4 7 3.5754 0.7304 0.0006 5 7 3.5845 -0.6704 0.0003 6 6 4.7747 -1.5246 0.0003 7 6 5.6583 -1.1548 -1.1631 8 8 5.3267 -0.2651 -1.9176 9 7 6.8175 -1.8122 -1.3646 10 6 7.6762 -1.4532 -2.4958 11 1 7.0567 -1.1632 -3.3446 12 6 8.5787 -0.2829 -2.0998 13 6 8.5401 -2.6554 -2.8822 14 7 7.6789 -3.8109 -3.1460 15 6 7.3258 -4.7251 -2.0573 16 6 7.2041 -4.0363 -4.4106 17 1 7.6992 -3.5907 -5.2607 18 6 6.0865 -4.8375 -4.5997 19 7 5.3117 -5.1377 -3.5789 20 14 5.6820 -5.4895 -6.3028 21 1 6.4440 -6.7404 -6.5477 22 1 4.2267 -5.7708 -6.3925 23 1 6.0540 -4.4757 -7.3222 24 6 2.3031 -1.0941 0.0051 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 1.9949 2.1578 -0.0007 29 1 5.3228 -1.3840 0.9320 30 1 4.4730 -2.5681 -0.0899 31 1 7.0828 -2.5237 -0.7608 32 1 9.2173 -0.0155 -2.9416 33 1 7.9632 0.5735 -1.8246 34 1 9.1982 -0.5729 -1.2511 35 1 9.1138 -2.4177 -3.7779 36 1 9.2225 -2.8900 -2.0652 37 1 6.3630 -4.4349 -1.6368 38 1 7.2617 -5.7425 -2.4434 39 1 8.0900 -4.6786 -1.2814 40 1 4.5308 -5.6980 -3.7111 41 1 1.9725 -2.1222 0.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733029143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:30 Heat of formation + Delta-G solvation = 66.864891 kcal Electronic energy + Delta-G solvation = -22423.630380 eV Core-core repulsion = 19148.466879 eV Total energy + Delta-G solvation = -3275.163501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.02691 -39.13555 -36.40568 -34.07688 -33.44614 -31.58694 -31.20988 -30.30295 -28.09792 -26.23847 -25.68180 -25.37957 -22.26277 -21.24002 -20.29279 -20.10327 -19.70088 -16.95607 -16.88224 -16.64092 -15.36136 -15.22289 -14.79628 -14.46803 -13.99168 -13.78066 -13.41849 -13.26391 -13.24049 -12.89668 -12.86315 -12.54926 -12.24107 -12.13827 -11.81831 -11.73460 -11.47267 -11.13483 -10.88256 -10.81521 -10.58737 -10.31138 -10.25953 -10.01674 -9.88330 -9.62810 -9.02269 -8.64638 -8.40197 -8.12344 -6.84038 -5.79074 -3.21166 2.08514 2.61900 3.01789 3.10798 3.36654 3.43360 3.44028 3.67353 4.47434 4.74519 4.96973 5.10626 5.13988 5.23842 5.32650 5.39624 5.42690 5.56966 5.67021 5.77998 5.83224 5.96237 5.97661 6.06839 6.08626 6.21592 6.28846 6.45005 6.50298 6.57530 6.84139 6.85621 7.09968 7.18334 7.24786 7.55464 7.76193 7.93655 8.03742 8.32252 8.74990 9.17566 9.80538 10.27098 11.26845 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.005200 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.008805 B = 5383.154799 C = 6519.046484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.247 4.247 3 C 0.038 3.962 4 N -0.266 5.266 5 N -0.354 5.354 6 C 0.115 3.885 7 C 0.505 3.495 8 O -0.522 6.522 9 N -0.697 5.697 10 C 0.120 3.880 11 H 0.084 0.916 12 C -0.159 4.159 13 C 0.143 3.857 14 N -0.598 5.598 15 C 0.162 3.838 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.057 3.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.178 0.822 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.395 0.605 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.043 0.957 39 H -0.004 1.004 40 H 0.251 0.749 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 5.926 10.792 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.259 4.259 3 C -0.149 4.149 4 N -0.086 5.086 5 N -0.136 5.136 6 C -0.011 4.011 7 C 0.288 3.712 8 O -0.398 6.398 9 N -0.348 5.348 10 C 0.012 3.988 11 H 0.102 0.898 12 C -0.218 4.218 13 C 0.015 3.985 14 N -0.320 5.320 15 C 0.017 3.983 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.089 4.089 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.195 0.805 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.229 0.771 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.199 6.698 10.224 12.281 hybrid contribution -1.109 -1.110 -0.717 1.726 sum -2.308 5.587 9.507 11.266 Atomic orbital electron populations 1.20005 0.89570 1.01667 1.01386 1.20059 0.96867 0.91947 1.17009 1.23746 0.90193 0.99565 1.01438 1.77428 1.20810 0.88508 1.21896 1.47935 1.04533 1.04661 1.56481 1.21531 0.85439 0.94561 0.99568 1.20202 0.81972 0.82859 0.86147 1.90734 1.72270 1.30541 1.46206 1.45696 1.20896 1.37638 1.30587 1.21860 0.92365 0.95799 0.88727 0.89768 1.22148 0.99615 0.98945 1.01097 1.21196 0.92143 0.86522 0.98669 1.43928 1.56941 1.24000 1.07122 1.20835 0.95102 0.94322 0.88017 1.19203 1.07501 1.27907 0.83808 0.91298 1.24910 0.95665 1.01634 0.97206 1.70048 1.15386 1.40415 1.29377 0.86282 0.77116 0.79066 0.84145 1.21485 1.21819 1.20577 1.22331 0.83897 1.00112 1.02548 0.92306 0.92198 0.92385 0.80512 0.87505 0.85592 0.77139 0.92102 0.92904 0.93175 0.92229 0.93911 0.95303 0.93781 0.98543 0.93902 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.37 36.01 0.37 -0.33 16 2 C -0.25 -3.42 6.10 -105.05 -0.64 -4.06 16 3 C 0.04 0.57 11.96 -17.36 -0.21 0.36 16 4 N -0.27 -4.78 11.64 30.62 0.36 -4.43 16 5 N -0.35 -5.84 3.40 -62.54 -0.21 -6.05 16 6 C 0.11 1.67 6.99 -5.19 -0.04 1.64 16 7 C 0.51 9.51 7.82 -10.99 -0.09 9.43 16 8 O -0.52 -12.22 15.37 5.56 0.09 -12.13 16 9 N -0.70 -12.16 4.42 -53.81 -0.24 -12.40 16 10 C 0.12 2.22 2.88 -67.93 -0.20 2.03 16 11 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 12 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 13 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 14 N -0.60 -13.95 2.78 -181.13 -0.50 -14.45 16 15 C 0.16 3.57 7.60 59.84 0.45 4.03 16 16 C -0.25 -6.81 9.68 -15.06 -0.15 -6.95 16 17 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 18 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 19 N -0.91 -25.38 10.67 55.49 0.59 -24.79 16 20 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.06 0.82 11.36 -17.22 -0.20 0.62 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.13 1.61 8.07 -51.93 -0.42 1.19 16 31 H 0.39 6.04 7.18 -40.82 -0.29 5.74 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 37 H 0.03 0.67 6.97 -51.93 -0.36 0.30 16 38 H 0.04 1.09 7.22 -51.93 -0.37 0.71 16 39 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 40 H 0.25 6.91 8.31 -40.81 -0.34 6.57 16 41 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -34.36 343.83 -6.63 -41.00 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.43 Total: 3.84 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.44 Total: 7.38 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.01 Total: -62.12 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.36 -6.63 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733029143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.861 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds