Wall clock time and date at job start Tue Mar 31 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47220 * 240.00101 * 2 1 3 5 5 C 1.52994 * 109.47107 * 120.00123 * 2 1 3 6 6 H 1.08999 * 109.47185 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46975 * 299.99702 * 5 2 1 8 8 N 1.46501 * 109.47278 * 174.99895 * 7 5 2 9 9 C 1.36939 * 120.00136 * 180.02562 * 8 7 5 10 10 H 1.07992 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99833 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00203 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46907 * 89.99612 * 13 11 9 15 15 H 1.48496 * 109.47334 * 210.00109 * 13 11 9 16 16 H 1.48497 * 109.46906 * 330.00006 * 13 11 9 17 17 N 1.46493 * 109.47322 * 59.99823 * 5 2 1 18 18 C 1.34782 * 120.00049 * 85.00006 * 17 5 2 19 19 O 1.21568 * 119.99473 * 0.02562 * 18 17 5 20 20 C 1.47706 * 119.99832 * 179.97438 * 18 17 5 21 21 C 1.41507 * 126.51489 * 179.97438 * 20 18 17 22 22 C 1.35363 * 105.50109 * 179.79865 * 21 20 18 23 23 N 1.35032 * 107.23257 * 0.35768 * 22 21 20 24 24 H 0.97001 * 124.88983 * 179.89862 * 23 22 21 25 25 N 1.28466 * 110.22744 * 359.62253 * 23 22 21 26 26 H 1.09003 * 109.47281 * 300.00372 * 1 2 3 27 27 H 1.09003 * 109.47288 * 59.99786 * 1 2 3 28 28 H 1.08997 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47124 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46964 * 299.99781 * 3 2 1 31 31 H 1.08994 * 109.47232 * 59.99898 * 3 2 1 32 32 H 1.08997 * 109.46897 * 300.00320 * 4 2 1 33 33 H 1.09003 * 109.46897 * 59.99874 * 4 2 1 34 34 H 1.08999 * 109.47008 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47473 * 295.00132 * 7 5 2 36 36 H 1.08999 * 109.47247 * 55.00402 * 7 5 2 37 37 H 0.97001 * 119.99780 * 0.02562 * 8 7 5 38 38 H 0.97003 * 119.99944 * 180.02562 * 12 11 9 39 39 H 0.97003 * 120.00311 * 265.00299 * 17 5 2 40 40 H 1.08002 * 127.25076 * 0.06280 * 21 20 18 41 41 H 1.08002 * 126.38669 * 180.24477 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7209 1.2494 7 6 1.5300 0.0000 2.4984 8 7 1.9175 -0.7566 3.6916 9 6 1.5680 -0.3009 4.9347 10 1 1.0064 0.6160 5.0356 11 6 1.9357 -1.0176 6.0653 12 7 1.6002 -0.5794 7.2602 13 14 2.9078 -2.6032 5.8909 14 1 4.3610 -2.2981 5.9155 15 1 2.5742 -3.5145 7.0148 16 1 2.5612 -3.2573 4.6036 17 7 1.5517 -2.1024 1.2492 18 6 2.2285 -3.0565 0.5797 19 8 3.2444 -2.7709 -0.0238 20 6 1.7364 -4.4492 0.5802 21 6 2.3337 -5.5535 -0.0724 22 6 1.5406 -6.6133 0.2105 23 7 0.5272 -6.1605 0.9795 24 1 -0.1929 -6.7092 1.3279 25 7 0.6571 -4.8996 1.1882 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9646 0.9986 2.5443 36 1 0.4437 0.0783 2.4548 37 1 2.4217 -1.5803 3.6010 38 1 1.8575 -1.0800 8.0502 39 1 0.7412 -2.3303 1.7310 40 1 3.2353 -5.5521 -0.6671 41 1 1.6893 -7.6310 -0.1191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734558355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:54 Heat of formation + Delta-G solvation = 47.343503 kcal Electronic energy + Delta-G solvation = -22899.781209 eV Core-core repulsion = 19623.771197 eV Total energy + Delta-G solvation = -3276.010012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.67610 -39.90273 -37.32831 -34.54047 -33.29368 -31.86922 -31.25149 -30.70293 -28.09786 -27.10675 -26.79080 -24.36338 -23.09354 -21.79352 -21.22863 -19.96755 -18.77263 -18.50157 -17.62813 -16.74360 -15.90058 -15.75155 -15.28207 -14.49182 -14.19986 -13.93021 -13.78771 -13.66705 -13.39730 -13.28249 -13.01726 -12.71961 -12.20280 -11.95733 -11.80959 -11.49931 -11.35919 -11.18239 -11.00540 -10.82760 -10.69499 -10.52166 -10.27592 -9.94356 -9.84738 -9.58359 -9.49094 -9.30727 -8.88141 -8.61947 -7.21141 -5.75602 -3.10688 1.61120 2.06837 2.76791 3.40304 3.44944 3.45768 3.48173 3.59436 4.48159 4.61595 4.71717 4.87492 5.02072 5.13043 5.25388 5.48747 5.53601 5.54909 5.64121 5.69118 5.77485 5.85381 5.91455 5.92731 6.06190 6.13574 6.17082 6.26896 6.31912 6.41503 6.44902 6.50370 6.62235 6.72029 6.83153 6.93530 7.64382 7.93629 8.00482 8.43018 8.47614 9.22709 9.95379 10.15068 11.42653 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.007669 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.297391 B = 3650.186361 C = 5474.276712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.130 4.130 5 C 0.144 3.856 6 H 0.089 0.911 7 C 0.146 3.854 8 N -0.755 5.755 9 C -0.242 4.242 10 H 0.091 0.909 11 C 0.007 3.993 12 N -0.934 5.934 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.698 5.698 18 C 0.601 3.399 19 O -0.535 6.535 20 C -0.011 4.011 21 C -0.181 4.181 22 C -0.020 4.020 23 N -0.384 5.384 24 H 0.446 0.554 25 N -0.254 5.254 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.363 0.637 38 H 0.259 0.741 39 H 0.410 0.590 40 H 0.162 0.838 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -9.006 -18.302 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.039 3.961 6 H 0.107 0.893 7 C 0.019 3.981 8 N -0.401 5.401 9 C -0.372 4.372 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.582 5.582 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.203 1.203 17 N -0.348 5.348 18 C 0.385 3.615 19 O -0.410 6.410 20 C -0.172 4.172 21 C -0.209 4.209 22 C -0.164 4.164 23 N -0.098 5.098 24 H 0.290 0.710 25 N -0.090 5.090 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.196 0.804 38 H 0.069 0.931 39 H 0.245 0.755 40 H 0.180 0.820 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.961 -8.258 -17.892 19.927 hybrid contribution 0.585 -2.043 0.023 2.125 sum -2.376 -10.301 -17.869 20.762 Atomic orbital electron populations 1.21925 0.94577 1.01747 1.01749 1.20888 0.95967 0.95666 0.95191 1.21893 1.01198 0.94844 1.01949 1.21892 1.01619 0.99656 0.95573 1.21399 0.99919 0.79929 0.94837 0.89313 1.21088 0.98027 0.94694 0.84328 1.42717 1.67847 1.27241 1.02272 1.19038 1.29476 1.07001 0.81673 0.89121 1.24633 1.00676 0.98474 0.95122 1.69699 1.51308 1.40262 0.96891 0.86593 0.80613 0.84786 0.76870 1.21103 1.21859 1.20277 1.45870 1.29135 1.08250 1.51576 1.16823 0.83303 0.82301 0.79071 1.90772 1.24473 1.81434 1.44323 1.22136 0.95615 0.96241 1.03222 1.21803 1.02999 0.90564 1.05570 1.22926 0.91889 1.01093 1.00538 1.43385 1.22152 1.06282 1.38019 0.71016 1.73623 1.20093 0.94642 1.20672 0.91759 0.93119 0.92847 0.92509 0.92799 0.91753 0.92958 0.93887 0.91938 0.93702 0.94513 0.80442 0.93114 0.75456 0.82044 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.97 37.16 0.30 -1.53 16 2 C -0.08 -1.04 0.62 -154.51 -0.10 -1.14 16 3 C -0.14 -1.77 8.12 37.16 0.30 -1.47 16 4 C -0.13 -1.81 7.00 37.16 0.26 -1.55 16 5 C 0.14 2.39 1.69 -67.94 -0.11 2.28 16 6 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 7 C 0.15 2.78 5.10 -4.04 -0.02 2.76 16 8 N -0.75 -18.07 5.24 -59.91 -0.31 -18.38 16 9 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 10 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 11 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 12 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 13 Si 0.88 22.93 27.74 -169.99 -4.71 18.21 16 14 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 17 N -0.70 -11.67 3.64 -54.80 -0.20 -11.87 16 18 C 0.60 10.28 6.18 -12.39 -0.08 10.21 16 19 O -0.53 -9.98 14.05 5.31 0.07 -9.91 16 20 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 21 C -0.18 -2.23 10.81 -39.36 -0.43 -2.66 16 22 C -0.02 -0.18 12.02 -17.17 -0.21 -0.39 16 23 N -0.38 -3.75 6.83 30.47 0.21 -3.54 16 24 H 0.45 2.59 8.96 -190.44 -1.71 0.88 16 25 N -0.25 -3.58 11.92 33.42 0.40 -3.18 16 26 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.70 7.60 -51.93 -0.39 0.30 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 32 H 0.05 0.79 5.78 -51.93 -0.30 0.49 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 35 H 0.05 0.86 6.71 -51.93 -0.35 0.51 16 36 H 0.04 0.69 6.17 -51.93 -0.32 0.37 16 37 H 0.36 8.82 5.20 -40.82 -0.21 8.61 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.41 6.91 8.33 -40.82 -0.34 6.57 16 40 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -34.80 328.49 -6.95 -41.75 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.20 Total: 11.91 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.93 Total: -1.16 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 0.87 Total: -65.75 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.80 -6.95 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734558355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.090 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds