Wall clock time and date at job start Tue Mar 31 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47220 * 240.00101 * 2 1 3 5 5 C 1.52994 * 109.47107 * 120.00123 * 2 1 3 6 6 H 1.08999 * 109.47185 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46975 * 299.99702 * 5 2 1 8 8 N 1.46501 * 109.47278 * 174.99895 * 7 5 2 9 9 C 1.36939 * 120.00136 * 180.02562 * 8 7 5 10 10 H 1.07992 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99833 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00203 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46907 * 89.99612 * 13 11 9 15 15 H 1.48496 * 109.47334 * 210.00109 * 13 11 9 16 16 H 1.48497 * 109.46906 * 330.00006 * 13 11 9 17 17 N 1.46493 * 109.47322 * 59.99823 * 5 2 1 18 18 C 1.34782 * 120.00049 * 85.00006 * 17 5 2 19 19 O 1.21568 * 119.99473 * 0.02562 * 18 17 5 20 20 C 1.47706 * 119.99832 * 179.97438 * 18 17 5 21 21 C 1.41507 * 126.51489 * 179.97438 * 20 18 17 22 22 C 1.35363 * 105.50109 * 179.79865 * 21 20 18 23 23 N 1.35032 * 107.23257 * 0.35768 * 22 21 20 24 24 H 0.97001 * 124.88983 * 179.89862 * 23 22 21 25 25 N 1.28466 * 110.22744 * 359.62253 * 23 22 21 26 26 H 1.09003 * 109.47281 * 300.00372 * 1 2 3 27 27 H 1.09003 * 109.47288 * 59.99786 * 1 2 3 28 28 H 1.08997 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47124 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46964 * 299.99781 * 3 2 1 31 31 H 1.08994 * 109.47232 * 59.99898 * 3 2 1 32 32 H 1.08997 * 109.46897 * 300.00320 * 4 2 1 33 33 H 1.09003 * 109.46897 * 59.99874 * 4 2 1 34 34 H 1.08999 * 109.47008 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47473 * 295.00132 * 7 5 2 36 36 H 1.08999 * 109.47247 * 55.00402 * 7 5 2 37 37 H 0.97001 * 119.99780 * 0.02562 * 8 7 5 38 38 H 0.97003 * 119.99944 * 180.02562 * 12 11 9 39 39 H 0.97003 * 120.00311 * 265.00299 * 17 5 2 40 40 H 1.08002 * 127.25076 * 0.06280 * 21 20 18 41 41 H 1.08002 * 126.38669 * 180.24477 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7209 1.2494 7 6 1.5300 0.0000 2.4984 8 7 1.9175 -0.7566 3.6916 9 6 1.5680 -0.3009 4.9347 10 1 1.0064 0.6160 5.0356 11 6 1.9357 -1.0176 6.0653 12 7 1.6002 -0.5794 7.2602 13 14 2.9078 -2.6032 5.8909 14 1 4.3610 -2.2981 5.9155 15 1 2.5742 -3.5145 7.0148 16 1 2.5612 -3.2573 4.6036 17 7 1.5517 -2.1024 1.2492 18 6 2.2285 -3.0565 0.5797 19 8 3.2444 -2.7709 -0.0238 20 6 1.7364 -4.4492 0.5802 21 6 2.3337 -5.5535 -0.0724 22 6 1.5406 -6.6133 0.2105 23 7 0.5272 -6.1605 0.9795 24 1 -0.1929 -6.7092 1.3279 25 7 0.6571 -4.8996 1.1882 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9646 0.9986 2.5443 36 1 0.4437 0.0783 2.4548 37 1 2.4217 -1.5803 3.6010 38 1 1.8575 -1.0800 8.0502 39 1 0.7412 -2.3303 1.7310 40 1 3.2353 -5.5521 -0.6671 41 1 1.6893 -7.6310 -0.1191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734558355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:53 Heat of formation + Delta-G solvation = 21.338540 kcal Electronic energy + Delta-G solvation = -22900.908869 eV Core-core repulsion = 19623.771197 eV Total energy + Delta-G solvation = -3277.137671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.56853 -41.19181 -38.63583 -36.34621 -34.69190 -33.40498 -32.70380 -31.63878 -29.70235 -28.15706 -27.90467 -25.90209 -24.59397 -22.99364 -22.55461 -21.17513 -20.11490 -19.65490 -19.18358 -17.98133 -17.15996 -17.07294 -16.61903 -16.10156 -15.88710 -15.12135 -15.03498 -14.82993 -14.63018 -14.53786 -14.45888 -14.20488 -13.69159 -13.34821 -13.13983 -12.99175 -12.80711 -12.54628 -12.39014 -12.18026 -12.03225 -11.95037 -11.85148 -11.64435 -11.29907 -11.18829 -10.97961 -10.46139 -10.15585 -9.92156 -9.30785 -8.05218 -5.37132 0.54870 1.24787 1.32128 1.33908 1.40321 1.94748 2.33817 2.40070 2.43292 3.27164 3.42867 3.50472 3.79014 4.00470 4.02158 4.09665 4.25636 4.30123 4.44043 4.61765 4.76432 4.77428 4.83037 4.86089 4.88274 4.97223 5.06942 5.09023 5.13168 5.24866 5.31216 5.35309 5.42907 5.55235 5.61659 5.75182 6.17080 6.18852 6.48937 6.89258 7.04560 7.19622 7.80847 7.98829 9.16178 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.007669 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.297391 B = 3650.186361 C = 5474.276712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.121 4.121 5 C 0.152 3.848 6 H 0.069 0.931 7 C 0.146 3.854 8 N -0.757 5.757 9 C -0.226 4.226 10 H 0.066 0.934 11 C -0.055 4.055 12 N -0.979 5.979 13 Si 0.946 3.054 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.265 1.265 17 N -0.699 5.699 18 C 0.597 3.403 19 O -0.559 6.559 20 C -0.045 4.045 21 C -0.208 4.208 22 C 0.014 3.986 23 N -0.368 5.368 24 H 0.463 0.537 25 N -0.282 5.282 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.408 0.592 40 H 0.165 0.835 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -10.844 -20.244 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.088 0.912 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.357 4.357 10 H 0.084 0.916 11 C -0.247 4.247 12 N -0.630 5.630 13 Si 0.774 3.226 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.190 1.190 17 N -0.349 5.349 18 C 0.383 3.617 19 O -0.437 6.437 20 C -0.205 4.205 21 C -0.236 4.236 22 C -0.131 4.131 23 N -0.085 5.085 24 H 0.311 0.689 25 N -0.120 5.120 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.194 0.806 38 H 0.067 0.933 39 H 0.244 0.756 40 H 0.183 0.817 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.362 -10.092 -19.874 22.542 hybrid contribution 0.639 -1.474 0.563 1.702 sum -2.723 -11.566 -19.311 22.674 Atomic orbital electron populations 1.21883 0.93479 1.01654 1.02533 1.20858 0.96745 0.96026 0.93539 1.21888 1.01040 0.93924 1.02863 1.21777 1.00532 0.99087 0.96390 1.21269 0.98725 0.80322 0.94970 0.91250 1.21243 0.98507 0.94607 0.83624 1.42740 1.67731 1.27553 1.02265 1.19049 1.27572 1.05649 0.83412 0.91582 1.25317 1.02589 1.01946 0.94886 1.69848 1.53445 1.41977 0.97686 0.85549 0.78896 0.81011 0.77102 1.21107 1.21884 1.19020 1.45863 1.29027 1.08272 1.51692 1.17152 0.82902 0.83204 0.78437 1.90742 1.25484 1.82089 1.45342 1.22037 0.97123 0.95885 1.05441 1.22060 1.04187 0.90803 1.06573 1.23610 0.89547 1.02249 0.97673 1.43521 1.22640 1.05263 1.37087 0.68890 1.73536 1.20158 0.96696 1.21585 0.92211 0.91053 0.93398 0.92853 0.90596 0.92124 0.94368 0.91754 0.93488 0.93262 0.93588 0.80552 0.93347 0.75610 0.81699 0.74778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 7.97 71.98 0.57 -2.73 16 2 C -0.07 -1.86 0.62 -52.18 -0.03 -1.89 16 3 C -0.14 -3.27 8.12 71.98 0.58 -2.69 16 4 C -0.12 -3.24 7.00 71.98 0.50 -2.74 16 5 C 0.15 5.03 1.69 44.99 0.08 5.10 16 6 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 7 C 0.15 5.54 5.10 86.38 0.44 5.98 16 8 N -0.76 -36.22 5.24 -343.46 -1.80 -38.02 16 9 C -0.23 -12.96 10.47 84.03 0.88 -12.08 16 10 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 11 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 12 N -0.98 -63.12 13.97 21.65 0.30 -62.81 16 13 Si 0.95 47.85 27.74 68.60 1.90 49.75 16 14 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 16 H -0.26 -12.72 6.52 99.48 0.65 -12.07 16 17 N -0.70 -23.35 3.64 -445.56 -1.62 -24.97 16 18 C 0.60 20.53 6.18 86.74 0.54 21.07 16 19 O -0.56 -21.19 14.05 -3.93 -0.06 -21.24 16 20 C -0.05 -1.35 7.13 42.46 0.30 -1.05 16 21 C -0.21 -4.75 10.81 22.41 0.24 -4.51 16 22 C 0.01 0.20 12.02 83.54 1.00 1.20 16 23 N -0.37 -6.11 6.83 -57.51 -0.39 -6.50 16 24 H 0.46 3.84 8.96 -219.99 -1.97 1.87 16 25 N -0.28 -7.55 11.92 -48.18 -0.57 -8.13 16 26 H 0.06 1.48 6.32 -2.39 -0.02 1.46 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.46 6.54 -2.39 -0.02 1.45 16 32 H 0.04 1.13 5.78 -2.39 -0.01 1.12 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.40 7.53 -2.39 -0.02 1.38 16 35 H 0.05 1.86 6.71 -2.39 -0.02 1.84 16 36 H 0.05 1.70 6.17 -2.39 -0.01 1.68 16 37 H 0.36 17.44 5.20 -92.71 -0.48 16.96 16 38 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.41 13.78 8.33 -92.71 -0.77 13.00 16 40 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.24 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -76.65 328.49 1.13 -75.52 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -2.21 Total: 33.60 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.58 Total: 2.80 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -4.08 Total: -140.44 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.24 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -76.65 1.13 -75.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734558355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.858 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds