Wall clock time and date at job start Tue Mar 31 2020 02:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53005 * 109.47159 * 300.00546 * 5 2 1 8 8 N 1.46502 * 109.47209 * 174.99761 * 7 5 2 9 9 C 1.36934 * 119.99993 * 179.97438 * 8 7 5 10 10 H 1.07991 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99828 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99940 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99945 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47222 * 90.00707 * 13 11 9 15 15 H 1.48501 * 109.47178 * 210.00307 * 13 11 9 16 16 H 1.48500 * 109.47709 * 330.00712 * 13 11 9 17 17 N 1.46506 * 109.47075 * 59.99940 * 5 2 1 18 18 C 1.34777 * 119.99949 * 84.99839 * 17 5 2 19 19 O 1.21612 * 119.99898 * 0.02562 * 18 17 5 20 20 C 1.47406 * 120.00171 * 180.02562 * 18 17 5 21 21 N 1.31613 * 125.86211 * 359.69618 * 20 18 17 22 22 C 1.33104 * 109.09040 * 179.83308 * 21 20 18 23 23 C 1.35557 * 108.35427 * 0.43274 * 22 21 20 24 24 N 1.35406 * 107.15953 * 359.73669 * 23 22 21 25 25 H 0.96999 * 126.44148 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09000 * 109.46692 * 294.99544 * 7 5 2 36 36 H 1.08993 * 109.47016 * 54.99469 * 7 5 2 37 37 H 0.97000 * 119.99673 * 359.97438 * 8 7 5 38 38 H 0.96996 * 119.99708 * 179.97438 * 12 11 9 39 39 H 0.97000 * 119.99856 * 265.00497 * 17 5 2 40 40 H 1.08005 * 125.82194 * 180.20776 * 22 21 20 41 41 H 1.08004 * 126.42426 * 179.77765 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5299 -2.1638 -1.2493 8 7 1.9175 -2.8188 -2.5011 9 6 1.5688 -4.1235 -2.7277 10 1 1.0085 -4.6697 -1.9834 11 6 1.9365 -4.7442 -3.9136 12 7 1.6009 -5.9981 -4.1316 13 14 2.9063 -3.7996 -5.2006 14 1 4.3600 -3.9714 -4.9498 15 1 2.5724 -4.3183 -6.5514 16 1 2.5579 -2.3581 -5.1238 17 7 1.5517 -0.0307 -2.4454 18 6 2.2285 1.0262 -2.9369 19 8 3.2447 1.4062 -2.3877 20 6 1.7368 1.7214 -4.1402 21 7 0.6589 1.4063 -4.8264 22 6 0.5274 2.2540 -5.8441 23 6 1.5617 3.1295 -5.8067 24 7 2.3254 2.8003 -4.7381 25 1 3.1377 3.2460 -4.4512 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.9645 -2.7028 -0.4074 36 1 0.4437 -2.1650 -1.1597 37 1 2.4211 -2.3282 -3.1694 38 1 1.8576 -6.4317 -4.9604 39 1 0.7412 -0.3340 -2.8837 40 1 -0.2658 2.2436 -6.5770 41 1 1.7423 3.9386 -6.4990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734562345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:42 Heat of formation + Delta-G solvation = 6.398954 kcal Electronic energy + Delta-G solvation = -22933.438329 eV Core-core repulsion = 19655.652828 eV Total energy + Delta-G solvation = -3277.785501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.21840 -41.20484 -38.68381 -36.34952 -34.87374 -33.69949 -33.27322 -30.94857 -29.58070 -28.16578 -27.86067 -25.76651 -24.40460 -22.95887 -22.52997 -21.53635 -20.15632 -20.09252 -19.08843 -17.64325 -17.19656 -17.04543 -16.58034 -15.98340 -15.79343 -15.24317 -15.01432 -14.91338 -14.79742 -14.55226 -14.52521 -14.45626 -13.83301 -13.35871 -13.15987 -13.00126 -12.81138 -12.56496 -12.40068 -12.18276 -12.07129 -11.84647 -11.67850 -11.37811 -11.34820 -11.32755 -11.30075 -10.99429 -10.09463 -9.55417 -9.30338 -8.04430 -5.36405 0.31873 1.33107 1.34230 1.41068 1.56307 1.63197 2.35826 2.44040 2.54801 3.26101 3.29470 3.46006 3.76572 3.98920 4.00215 4.07724 4.27518 4.33679 4.40535 4.45940 4.59357 4.81039 4.84190 4.85674 4.94989 4.95954 5.04442 5.07704 5.12176 5.22835 5.28642 5.37566 5.52485 5.55532 5.61728 5.75880 6.15312 6.19510 6.34909 6.80652 7.04721 7.05860 7.81320 7.98759 9.16976 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.007664 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.424270 B = 3652.368512 C = 5459.997766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.121 4.121 4 C -0.140 4.140 5 C 0.153 3.847 6 H 0.074 0.926 7 C 0.145 3.855 8 N -0.757 5.757 9 C -0.226 4.226 10 H 0.067 0.933 11 C -0.055 4.055 12 N -0.978 5.978 13 Si 0.945 3.055 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.265 1.265 17 N -0.688 5.688 18 C 0.603 3.397 19 O -0.562 6.562 20 C 0.105 3.895 21 N -0.469 5.469 22 C -0.056 4.056 23 C 0.008 3.992 24 N -0.517 5.517 25 H 0.439 0.561 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.361 0.639 38 H 0.257 0.743 39 H 0.412 0.588 40 H 0.200 0.800 41 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 23.513 2.603 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 C -0.178 4.178 4 C -0.197 4.197 5 C 0.049 3.951 6 H 0.092 0.908 7 C 0.019 3.981 8 N -0.403 5.403 9 C -0.357 4.357 10 H 0.085 0.915 11 C -0.247 4.247 12 N -0.629 5.629 13 Si 0.774 3.226 14 H -0.210 1.210 15 H -0.220 1.220 16 H -0.191 1.191 17 N -0.337 5.337 18 C 0.388 3.612 19 O -0.441 6.441 20 C -0.155 4.155 21 N -0.192 5.192 22 C -0.209 4.209 23 C -0.133 4.133 24 N -0.120 5.120 25 H 0.280 0.720 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.194 0.806 38 H 0.066 0.934 39 H 0.249 0.751 40 H 0.217 0.783 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.446 22.870 3.323 23.114 hybrid contribution 1.079 0.572 -1.475 1.915 sum 0.633 23.442 1.848 23.523 Atomic orbital electron populations 1.21900 0.93501 1.02282 1.02040 1.20865 0.96741 0.95791 0.93757 1.21779 1.00612 0.94600 1.00798 1.21891 1.01101 1.00540 0.96192 1.21347 0.98927 0.90627 0.84224 0.90786 1.21261 0.98617 0.89783 0.88410 1.42728 1.67795 1.10750 1.19012 1.19043 1.27617 0.87677 1.01333 0.91519 1.25316 1.02618 0.96719 1.00073 1.69845 1.53440 1.12663 1.26986 0.85554 0.78855 0.78832 0.79345 1.21000 1.22005 1.19073 1.45688 1.28948 1.29908 1.29151 1.16609 0.82990 0.80265 0.81326 1.90793 1.25361 1.66988 1.61004 1.22477 0.96317 0.95524 1.01155 1.70190 1.15584 1.26292 1.07126 1.23124 1.02688 0.95210 0.99889 1.23786 0.93171 1.03794 0.92513 1.43022 1.23345 1.23728 1.21912 0.71996 0.93430 0.90996 0.92162 0.91703 0.93251 0.94501 0.92085 0.92709 0.90575 0.92983 0.93558 0.80577 0.93355 0.75138 0.78281 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 7.97 71.98 0.57 -2.69 16 2 C -0.07 -1.77 0.62 -52.18 -0.03 -1.80 16 3 C -0.12 -3.02 7.00 71.98 0.50 -2.52 16 4 C -0.14 -3.10 8.12 71.98 0.58 -2.52 16 5 C 0.15 4.87 1.69 44.99 0.08 4.95 16 6 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 7 C 0.15 5.39 5.10 86.38 0.44 5.83 16 8 N -0.76 -35.87 5.24 -343.45 -1.80 -37.67 16 9 C -0.23 -12.92 10.47 84.04 0.88 -12.04 16 10 H 0.07 4.09 8.06 -2.92 -0.02 4.07 16 11 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 12 N -0.98 -63.23 13.97 21.65 0.30 -62.92 16 13 Si 0.95 47.95 27.73 68.60 1.90 49.86 16 14 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 15 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 16 H -0.27 -12.82 6.52 99.48 0.65 -12.17 16 17 N -0.69 -22.36 3.64 -445.80 -1.62 -23.98 16 18 C 0.60 19.50 6.17 86.66 0.53 20.03 16 19 O -0.56 -19.24 14.22 -4.07 -0.06 -19.29 16 20 C 0.10 3.03 7.95 136.28 1.08 4.11 16 21 N -0.47 -13.96 10.90 -189.53 -2.06 -16.02 16 22 C -0.06 -1.18 11.85 83.88 0.99 -0.19 16 23 C 0.01 0.11 12.00 83.52 1.00 1.11 16 24 N -0.52 -10.30 6.14 -188.02 -1.16 -11.46 16 25 H 0.44 6.70 8.96 -92.71 -0.83 5.86 16 26 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.46 6.32 -2.38 -0.02 1.45 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 31 H 0.04 1.02 5.78 -2.39 -0.01 1.00 16 32 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.91 6.71 -2.39 -0.02 1.89 16 36 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 37 H 0.36 17.24 5.20 -92.71 -0.48 16.76 16 38 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.41 14.02 8.28 -92.71 -0.77 13.25 16 40 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.24 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -74.81 328.73 1.55 -73.26 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -1.07 Total: 36.80 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.11 Total: 11.43 kcal Atomic # 7 Polarization: -145.72 SS G_CDS: -6.34 Total: -152.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.90 Total: 49.86 kcal Total: -74.81 1.55 -73.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734562345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.661 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds