Wall clock time and date at job start Tue Mar 31 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35355 * 126.38656 * 85.00087 * 3 2 1 5 5 C 1.41509 * 105.50603 * 179.97438 * 4 3 2 6 6 C 1.47705 * 126.51877 * 179.97438 * 5 4 3 7 7 O 1.21572 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00436 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47414 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47288 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47494 * 55.00030 * 11 10 9 13 13 C 1.52997 * 109.47346 * 174.99988 * 11 10 9 14 14 N 1.46504 * 109.47128 * 295.00233 * 11 10 9 15 15 C 1.36934 * 120.00155 * 155.00144 * 14 11 10 16 16 H 1.08004 * 119.99971 * 359.97438 * 15 14 11 17 17 C 1.38806 * 120.00261 * 180.02562 * 15 14 11 18 18 N 1.31619 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00534 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46877 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47352 * 119.99722 * 19 17 15 22 22 H 1.48504 * 109.46970 * 240.00297 * 19 17 15 23 23 N 1.31802 * 106.96046 * 0.02562 * 5 4 3 24 24 N 1.28471 * 110.07373 * 359.75850 * 23 5 4 25 25 H 0.97003 * 124.88484 * 180.23570 * 24 23 5 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08005 * 127.25253 * 359.94742 * 4 3 2 32 32 H 0.97006 * 119.99805 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.46870 * 300.00315 * 9 8 6 34 34 H 1.08999 * 109.46996 * 60.00034 * 9 8 6 35 35 H 1.09004 * 109.47083 * 300.00706 * 10 9 8 36 36 H 1.08999 * 109.46839 * 60.00149 * 10 9 8 37 37 H 1.09001 * 109.47070 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47084 * 300.00278 * 13 11 10 39 39 H 1.09001 * 109.46737 * 60.00163 * 13 11 10 40 40 H 0.96996 * 119.99972 * 334.99832 * 14 11 10 41 41 H 0.97007 * 119.99817 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2104 2.2096 1.0855 5 6 2.6931 3.4413 0.5831 6 6 3.0422 4.6377 1.3759 7 8 2.9228 4.6214 2.5856 8 7 3.4921 5.7477 0.7580 9 6 3.8378 6.9346 1.5442 10 6 4.3182 8.0448 0.6074 11 6 4.6799 9.2840 1.4285 12 1 5.4092 9.0139 2.1921 13 6 5.2770 10.3497 0.5073 14 7 3.4741 9.8134 2.0705 15 6 3.5784 10.5571 3.2156 16 1 4.5495 10.7530 3.6457 17 6 2.4359 11.0582 3.8241 18 7 1.2524 10.8190 3.3003 19 14 2.5780 12.0721 5.3866 20 1 4.0079 12.1953 5.7684 21 1 2.0093 13.4238 5.1531 22 1 1.8300 11.4025 6.4809 23 7 2.7709 3.3182 -0.7268 24 7 2.3931 2.1429 -1.0825 25 1 2.3685 1.8212 -1.9973 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0231 1.9531 2.1178 32 1 3.5870 5.7608 -0.2073 33 1 2.9595 7.2758 2.0922 34 1 4.6314 6.6853 2.2485 35 1 5.1965 7.7032 0.0596 36 1 3.5249 8.2941 -0.0973 37 1 5.5342 11.2328 1.0923 38 1 6.1741 9.9559 0.0297 39 1 4.5476 10.6200 -0.2563 40 1 2.6019 9.6372 1.6844 41 1 0.4540 11.1696 3.7254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753002962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:19 Heat of formation + Delta-G solvation = 2.875448 kcal Electronic energy + Delta-G solvation = -21099.134232 eV Core-core repulsion = 17821.195941 eV Total energy + Delta-G solvation = -3277.938291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72529 -40.50099 -38.13027 -35.88956 -35.19542 -34.13906 -32.97016 -31.09576 -30.32103 -29.50500 -26.07222 -25.37765 -24.64215 -23.35298 -22.06948 -21.71493 -20.80762 -19.25260 -18.65900 -17.96669 -17.09700 -16.86403 -16.74685 -16.14298 -15.56043 -15.35378 -15.27012 -15.19244 -14.75118 -14.45170 -14.23579 -14.09818 -13.56806 -13.31861 -13.23310 -12.84614 -12.63072 -12.51913 -12.28423 -12.23052 -12.10622 -12.08607 -11.75519 -11.67885 -11.59453 -11.23358 -10.93714 -10.53017 -10.08245 -9.97986 -8.96594 -7.91073 -5.18021 0.46526 1.08414 1.46559 1.48337 1.57437 1.84028 2.23139 2.32206 2.58389 3.33894 3.43197 3.67613 3.91763 3.97169 4.01366 4.20999 4.33299 4.39332 4.42329 4.51960 4.67364 4.69324 4.76616 4.81274 4.89782 5.02488 5.08147 5.11047 5.20224 5.21165 5.27389 5.39827 5.40556 5.41196 5.55832 5.62648 6.08404 6.31908 6.45299 6.84775 7.14828 7.37639 8.15392 8.36907 9.32851 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.003055 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.156256 B = 9162.626209 C = 9920.645601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.050 4.050 3 C 0.039 3.961 4 C -0.204 4.204 5 C -0.034 4.034 6 C 0.591 3.409 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.132 3.868 10 C -0.116 4.116 11 C 0.165 3.835 12 H 0.045 0.955 13 C -0.153 4.153 14 N -0.736 5.736 15 C -0.230 4.230 16 H 0.075 0.925 17 C -0.081 4.081 18 N -0.971 5.971 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.298 1.298 23 N -0.263 5.263 24 N -0.360 5.360 25 H 0.463 0.537 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.157 0.843 32 H 0.416 0.584 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.371 0.629 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -24.019 -14.503 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.088 4.088 4 C -0.232 4.232 5 C -0.193 4.193 6 C 0.377 3.623 7 O -0.456 6.456 8 N -0.352 5.352 9 C 0.008 3.992 10 C -0.154 4.154 11 C 0.056 3.944 12 H 0.063 0.937 13 C -0.213 4.213 14 N -0.376 5.376 15 C -0.362 4.362 16 H 0.093 0.907 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.226 1.226 23 N -0.101 5.101 24 N -0.077 5.077 25 H 0.311 0.689 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.175 0.825 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.203 0.797 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.079 -23.299 -14.423 27.704 hybrid contribution -0.852 0.452 0.921 1.334 sum 3.227 -22.847 -13.501 26.733 Atomic orbital electron populations 1.21794 0.93839 1.03255 1.01954 1.20300 0.96374 0.86208 1.05985 1.21853 1.02975 0.97909 0.86044 1.21692 1.08092 0.92489 1.00946 1.21692 1.10310 0.96664 0.90669 1.17360 0.76571 0.82229 0.86157 1.90789 1.55625 1.83815 1.15362 1.45788 1.65462 1.12295 1.11702 1.21206 0.99618 0.84071 0.94264 1.21919 1.02609 0.93349 0.97528 1.20453 0.88688 0.91790 0.93455 0.93690 1.22256 1.00413 0.99312 0.99276 1.42675 1.04295 1.62244 1.28420 1.19648 0.92804 1.22882 1.00915 0.90677 1.25512 0.95245 1.03755 1.02718 1.69827 0.97423 1.52194 1.42810 0.85144 0.77643 0.77843 0.79622 1.18963 1.22082 1.22590 1.73448 1.18758 1.03947 1.13906 1.43393 1.45851 1.07508 1.10969 0.68868 0.89838 0.93496 0.92709 0.88059 0.87568 0.82531 0.74678 0.94152 0.92443 0.87740 0.91144 0.94679 0.90580 0.93694 0.79699 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 71.98 0.71 -0.44 16 2 C -0.05 -0.34 6.49 29.85 0.19 -0.15 16 3 C 0.04 0.59 6.48 41.40 0.27 0.86 16 4 C -0.20 -4.90 10.73 22.41 0.24 -4.65 16 5 C -0.03 -0.97 7.13 42.46 0.30 -0.67 16 6 C 0.59 21.11 7.82 86.75 0.68 21.79 16 7 O -0.58 -25.67 16.93 -3.94 -0.07 -25.74 16 8 N -0.70 -22.07 5.55 -466.11 -2.59 -24.66 16 9 C 0.13 4.78 5.56 86.38 0.48 5.26 16 10 C -0.12 -3.57 4.87 30.59 0.15 -3.42 16 11 C 0.16 6.35 2.89 44.99 0.13 6.48 16 12 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 13 C -0.15 -5.16 9.49 71.98 0.68 -4.47 16 14 N -0.74 -37.45 4.57 -322.95 -1.48 -38.93 16 15 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 18 N -0.97 -61.73 13.06 21.65 0.28 -61.44 16 19 Si 0.97 48.12 29.55 68.60 2.03 50.14 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 22 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 23 N -0.26 -5.93 11.92 -48.18 -0.57 -6.50 16 24 N -0.36 -5.15 6.83 -47.93 -0.33 -5.48 16 25 H 0.46 2.55 8.96 -219.99 -1.97 0.57 16 26 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.42 10.54 8.20 -92.70 -0.76 9.78 16 33 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.37 20.50 7.80 -92.71 -0.72 19.78 16 41 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -78.83 351.08 0.01 -78.82 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -2.40 Total: 29.79 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.14 Total: 4.00 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -4.68 Total: -137.01 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.74 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.14 kcal Total: -78.83 0.01 -78.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753002962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.696 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds