Wall clock time and date at job start Tue Mar 31 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 C 1.53001 * 109.46673 * 119.99845 * 2 1 3 5 5 H 1.09002 * 109.47278 * 59.99842 * 4 2 1 6 6 C 1.53004 * 109.47007 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.47292 * 174.99865 * 6 4 2 8 8 C 1.34776 * 120.00286 * 179.97438 * 7 6 4 9 9 O 1.21621 * 119.99972 * 354.89956 * 8 7 6 10 10 C 1.47161 * 120.00287 * 174.88962 * 8 7 6 11 11 C 1.38408 * 126.88285 * 2.65322 * 10 8 7 12 12 C 1.39674 * 105.35882 * 179.91249 * 11 10 8 13 13 N 1.30859 * 107.86395 * 0.35122 * 12 11 10 14 14 N 1.28450 * 110.92523 * 359.77457 * 13 12 11 15 15 C 1.46501 * 125.18800 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47336 * 299.99813 * 4 2 1 17 17 C 1.36940 * 120.00129 * 84.72479 * 16 4 2 18 18 H 1.07995 * 119.99678 * 0.27692 * 17 16 4 19 19 C 1.38812 * 120.00256 * 180.27880 * 17 16 4 20 20 N 1.31624 * 119.99809 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46940 * 89.99835 * 21 19 17 23 23 H 1.48500 * 109.46988 * 209.99753 * 21 19 17 24 24 H 1.48496 * 109.47063 * 329.99700 * 21 19 17 25 25 H 1.08998 * 109.47295 * 60.00070 * 1 2 3 26 26 H 1.09002 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47424 * 300.00409 * 1 2 3 28 28 H 1.08992 * 109.47174 * 239.99516 * 2 1 3 29 29 H 1.08994 * 109.47086 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46824 * 300.00218 * 3 2 1 31 31 H 1.09001 * 109.47151 * 59.99424 * 3 2 1 32 32 H 1.09000 * 109.47281 * 294.99985 * 6 4 2 33 33 H 1.09001 * 109.46926 * 55.00084 * 6 4 2 34 34 H 0.97004 * 119.99784 * 0.02562 * 7 6 4 35 35 H 1.08001 * 127.32014 * 359.97438 * 11 10 8 36 36 H 1.08003 * 126.06505 * 180.11152 * 12 11 10 37 37 H 1.09002 * 109.46692 * 265.10518 * 15 14 13 38 38 H 1.08994 * 109.47472 * 25.11119 * 15 14 13 39 39 H 1.09000 * 109.46751 * 145.11218 * 15 14 13 40 40 H 0.97008 * 120.00267 * 265.00332 * 16 4 2 41 41 H 0.96996 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -1.7489 1.2493 6 6 3.5699 -0.7218 1.2491 7 7 4.0583 -1.3055 2.5009 8 6 5.3833 -1.4105 2.7237 9 8 6.1728 -1.1074 1.8496 10 6 5.8749 -1.8918 4.0246 11 6 5.1093 -2.3210 5.0948 12 6 6.0262 -2.6750 6.0872 13 7 7.2285 -2.4558 5.6195 14 7 7.1780 -1.9991 4.4200 15 6 8.3405 -1.6475 3.6008 16 7 1.5516 -0.0306 2.4454 17 6 0.3077 -0.3168 2.9415 18 1 -0.3115 -1.0549 2.4536 19 6 -0.1573 0.3417 4.0715 20 7 0.5975 1.2410 4.6665 21 14 -1.8538 -0.0493 4.7486 22 1 -1.7498 -1.1518 5.7380 23 1 -2.4133 1.1574 5.4091 24 1 -2.7468 -0.4641 3.6371 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.9329 -1.3116 0.4073 33 1 3.9336 0.3018 1.1593 34 1 3.4279 -1.6170 3.1691 35 1 4.0319 -2.3723 5.1503 36 1 5.7854 -3.0576 7.0680 37 1 8.5438 -0.5810 3.6973 38 1 9.2078 -2.2148 3.9383 39 1 8.1347 -1.8851 2.5571 40 1 2.1077 0.6324 2.8838 41 1 0.2724 1.7015 5.4559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753825374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:20 Heat of formation + Delta-G solvation = 27.769580 kcal Electronic energy + Delta-G solvation = -22422.805782 eV Core-core repulsion = 19145.946981 eV Total energy + Delta-G solvation = -3276.858801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 10.33 seconds Orbital eigenvalues (eV) -43.49279 -40.54844 -38.77167 -35.52712 -34.71039 -34.14978 -32.32233 -31.69996 -29.40506 -28.01499 -27.70904 -25.75333 -24.49177 -23.26071 -22.20803 -21.15193 -20.19528 -19.33071 -18.79467 -17.35838 -17.26318 -16.76932 -16.53639 -16.06968 -15.65719 -15.60506 -15.10512 -14.75813 -14.65520 -14.52629 -14.38313 -13.79979 -13.72738 -13.38525 -13.24772 -12.86812 -12.79609 -12.62793 -12.41110 -12.12704 -11.91968 -11.88841 -11.85168 -11.37188 -11.19835 -11.11324 -10.78331 -10.36155 -10.03209 -9.92475 -8.89206 -7.81894 -5.07555 0.20537 1.41124 1.53067 1.55520 1.61177 1.62431 2.14884 2.30371 2.64466 3.51010 3.60276 3.61777 3.92912 3.97753 4.17052 4.29878 4.31038 4.37360 4.38299 4.45801 4.60612 4.65600 4.72421 4.79154 4.85870 4.98801 5.01550 5.15010 5.25256 5.30528 5.35372 5.49067 5.53154 5.63064 5.68578 5.72683 5.86619 6.38118 6.44803 6.99119 7.09052 7.47117 8.18766 8.43650 9.40763 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.005353 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.375415 B = 5229.599597 C = 6651.687568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.168 3.832 5 H 0.059 0.941 6 C 0.121 3.879 7 N -0.692 5.692 8 C 0.588 3.412 9 O -0.575 6.575 10 C -0.058 4.058 11 C -0.184 4.184 12 C -0.005 4.005 13 N -0.296 5.296 14 N -0.267 5.267 15 C 0.084 3.916 16 N -0.720 5.720 17 C -0.210 4.210 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.953 3.047 22 H -0.291 1.291 23 H -0.308 1.308 24 H -0.273 1.273 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.172 0.828 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.373 0.627 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -7.178 -4.796 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.193 4.193 4 C 0.059 3.941 5 H 0.077 0.923 6 C -0.003 4.003 7 N -0.342 5.342 8 C 0.374 3.626 9 O -0.456 6.456 10 C -0.186 4.186 11 C -0.213 4.213 12 C -0.180 4.180 13 N -0.129 5.129 14 N -0.055 5.055 15 C -0.056 4.056 16 N -0.361 5.361 17 C -0.342 4.342 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.785 3.215 22 H -0.218 1.218 23 H -0.236 1.236 24 H -0.198 1.198 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.189 0.811 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.205 0.795 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.151 -7.063 -5.236 14.200 hybrid contribution -2.043 0.416 0.963 2.296 sum 9.108 -6.647 -4.273 12.058 Atomic orbital electron populations 1.21756 0.95582 1.00888 1.01174 1.21580 0.96210 0.96576 0.98181 1.21721 1.00187 0.96625 1.00783 1.20709 0.89948 0.95846 0.87583 0.92306 1.21764 0.94711 0.98368 0.85444 1.45661 1.05612 1.61224 1.21732 1.17018 0.83044 0.77618 0.84939 1.90717 1.55882 1.52780 1.46209 1.21486 0.86596 1.12661 0.97859 1.22614 1.01572 1.04546 0.92588 1.24102 0.87163 1.04552 1.02224 1.73166 1.26852 1.16908 0.95967 1.45855 1.06047 1.43814 1.09802 1.22460 0.84990 1.03192 0.94915 1.42497 1.16931 1.47420 1.29207 1.19445 0.93117 1.16054 1.05536 0.90328 1.25260 1.00832 1.00188 0.99812 1.69795 1.38147 1.30823 1.22976 0.85433 0.81692 0.76064 0.78328 1.21846 1.23577 1.19835 0.93191 0.93554 0.93029 0.90153 0.92758 0.92625 0.94669 0.89820 0.91939 0.74980 0.81104 0.76667 0.89336 0.86623 0.88033 0.79457 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.25 71.98 0.59 -3.85 16 2 C -0.10 -3.13 2.80 -10.79 -0.03 -3.16 16 3 C -0.14 -4.21 8.69 71.98 0.63 -3.58 16 4 C 0.17 5.56 2.35 44.99 0.11 5.66 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.69 5.02 86.38 0.43 4.13 16 7 N -0.69 -21.81 5.38 -466.64 -2.51 -24.32 16 8 C 0.59 19.25 7.80 86.59 0.68 19.93 16 9 O -0.57 -20.39 14.79 -4.10 -0.06 -20.45 16 10 C -0.06 -1.77 6.96 40.79 0.28 -1.49 16 11 C -0.18 -5.16 10.50 22.66 0.24 -4.92 16 12 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 13 N -0.30 -8.34 11.90 -57.14 -0.68 -9.02 16 14 N -0.27 -7.60 3.75 -356.02 -1.33 -8.93 16 15 C 0.08 1.81 10.71 127.77 1.37 3.18 16 16 N -0.72 -30.45 3.68 -322.93 -1.19 -31.64 16 17 C -0.21 -10.01 7.55 84.03 0.63 -9.37 16 18 H 0.08 3.63 7.38 -2.91 -0.02 3.61 16 19 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 20 N -0.97 -55.03 13.06 21.65 0.28 -54.74 16 21 Si 0.95 43.40 29.55 68.60 2.03 45.43 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 2.07 5.99 -2.39 -0.01 2.06 16 28 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.56 6.32 -2.39 -0.02 1.55 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.33 7.60 -2.39 -0.02 1.31 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.04 6.17 -2.39 -0.01 2.03 16 34 H 0.41 13.25 7.16 -92.71 -0.66 12.59 16 35 H 0.17 4.44 7.58 -2.91 -0.02 4.42 16 36 H 0.22 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.32 6.54 -2.39 -0.02 2.31 16 40 H 0.37 17.83 7.80 -92.70 -0.72 17.11 16 41 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -61.47 335.59 2.62 -58.85 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.34 Total: 40.55 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.42 Total: 4.28 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.43 Total: -128.66 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.47 2.62 -58.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753825374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.621 kcal (2) G-P(sol) polarization free energy of solvation -61.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.33 seconds