Wall clock time and date at job start Tue Mar 31 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47308 * 2 1 4 4 C 1.53005 * 109.47302 * 120.00420 * 2 1 3 5 5 C 1.50698 * 109.46858 * 294.99920 * 4 2 1 6 6 H 1.08009 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00058 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99885 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46928 * 60.00317 * 9 7 5 11 11 H 1.48496 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47275 * 299.99900 * 9 7 5 13 13 C 1.53004 * 109.47022 * 239.99727 * 2 1 3 14 14 N 1.46503 * 109.46633 * 65.00460 * 13 2 1 15 15 C 1.39665 * 119.99888 * 179.97438 * 14 13 2 16 16 C 1.38951 * 120.02311 * 359.97438 * 15 14 13 17 17 C 1.38368 * 120.04900 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.94806 * 180.02562 * 17 16 15 19 19 C 1.38396 * 120.09394 * 0.02668 * 17 16 15 20 20 C 1.38910 * 120.05395 * 0.02562 * 19 17 16 21 21 N 1.39656 * 120.02849 * 179.97438 * 20 19 17 22 22 C 1.46503 * 120.00034 * 354.27336 * 21 20 19 23 23 C 1.46500 * 120.00207 * 174.27871 * 21 20 19 24 24 C 1.38763 * 120.02693 * 180.02562 * 15 14 13 25 25 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46785 * 299.99806 * 1 2 3 27 27 H 1.08998 * 109.47181 * 59.99984 * 1 2 3 28 28 H 1.09002 * 109.47288 * 54.99580 * 4 2 1 29 29 H 1.08992 * 109.47281 * 174.99943 * 4 2 1 30 30 H 0.97005 * 119.99766 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47395 * 305.00461 * 13 2 1 32 32 H 1.09002 * 109.47312 * 185.00033 * 13 2 1 33 33 H 0.96996 * 120.00071 * 359.97438 * 14 13 2 34 34 H 1.07999 * 119.97756 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.97276 * 179.71919 * 19 17 16 36 36 H 1.09003 * 109.47088 * 5.06394 * 22 21 20 37 37 H 1.08993 * 109.47302 * 125.06527 * 22 21 20 38 38 H 1.09003 * 109.47213 * 245.06889 * 22 21 20 39 39 H 1.09001 * 109.46998 * 89.99763 * 23 21 20 40 40 H 1.09004 * 109.47103 * 209.99367 * 23 21 20 41 41 H 1.08993 * 109.46986 * 329.99680 * 23 21 20 42 42 H 1.08010 * 120.04851 * 359.95893 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6755 -1.5194 3.8511 9 14 1.4988 0.5627 5.2496 10 1 0.0189 0.6703 5.3090 11 1 1.9926 -0.1381 6.4622 12 1 2.0919 1.9226 5.1872 13 6 2.0399 -0.7213 -1.2492 14 7 1.6524 0.0354 -2.4424 15 6 2.0088 -0.4293 -3.7103 16 6 2.7315 -1.6089 -3.8407 17 6 3.0844 -2.0700 -5.0966 18 9 3.7866 -3.2175 -5.2210 19 6 2.7192 -1.3575 -6.2254 20 6 1.9977 -0.1771 -6.0997 21 7 1.6299 0.5418 -7.2392 22 6 2.1103 0.1209 -8.5576 23 6 0.7637 1.7169 -7.1160 24 6 1.6425 0.2873 -4.8407 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7199 1.2951 29 1 3.1263 -0.7996 1.2055 30 1 2.9222 -1.8428 4.7318 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7996 -1.2056 33 1 1.1483 0.8591 -2.3517 34 1 3.0172 -2.1668 -2.9611 35 1 2.9996 -1.7168 -7.2045 36 1 2.6615 -0.8146 -8.4619 37 1 1.2606 -0.0246 -9.2245 38 1 2.7664 0.8889 -8.9674 39 1 1.3768 2.6070 -6.9749 40 1 0.1681 1.8259 -8.0224 41 1 0.1018 1.5921 -6.2591 42 1 1.0809 1.2045 -4.7412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895172021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:08 Heat of formation + Delta-G solvation = -23.640255 kcal Electronic energy + Delta-G solvation = -21245.529741 eV Core-core repulsion = 17946.521681 eV Total energy + Delta-G solvation = -3299.008060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.72662 -39.65202 -37.47235 -35.73939 -33.62971 -32.04016 -30.16996 -29.35958 -27.98860 -26.84078 -25.85539 -24.78843 -22.81002 -22.08352 -20.49359 -19.34397 -17.91678 -16.80365 -16.24894 -16.22768 -15.55784 -15.33963 -15.10769 -15.07118 -14.65361 -14.55115 -14.43762 -14.23453 -13.05892 -12.83023 -12.74523 -12.65705 -12.49257 -12.27975 -12.23380 -11.89209 -11.57267 -11.39167 -11.15305 -10.94312 -10.91244 -10.45482 -10.37929 -10.27642 -9.82145 -9.32969 -9.19580 -9.07508 -8.37888 -7.58239 -7.22153 -6.02393 -4.04551 1.48543 1.74600 2.89113 3.31250 3.36338 3.37902 3.68351 3.89660 4.43460 4.48685 4.74574 4.92970 5.06562 5.19310 5.25042 5.33336 5.34040 5.39646 5.49259 5.51257 5.52580 5.55825 5.66808 5.81033 5.90328 6.14882 6.19932 6.33051 6.35428 6.40339 6.44043 6.71996 6.84729 6.98344 7.02641 7.11211 7.33499 7.54448 7.61046 7.74683 7.94322 7.95990 8.38122 9.00911 9.59196 11.08964 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028527 B = 0.003046 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.295085 B = 9189.947413 C =10015.890377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.732 5.732 15 C 0.292 3.708 16 C -0.285 4.285 17 C 0.187 3.813 18 F -0.142 7.142 19 C -0.300 4.300 20 C 0.279 3.721 21 N -0.636 5.636 22 C 0.090 3.910 23 C 0.095 3.905 24 C -0.289 4.289 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.400 0.600 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 3.979 -23.087 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.001 4.001 14 N -0.358 5.358 15 C 0.183 3.817 16 C -0.310 4.310 17 C 0.167 3.833 18 F -0.121 7.121 19 C -0.324 4.324 20 C 0.177 3.823 21 N -0.348 5.348 22 C -0.053 4.053 23 C -0.048 4.048 24 C -0.316 4.316 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.609 3.796 -22.918 23.376 hybrid contribution -0.278 0.587 0.915 1.122 sum -2.887 4.383 -22.002 22.620 Atomic orbital electron populations 1.21726 0.95903 1.01156 1.00160 1.21446 0.95647 0.99813 0.94578 0.91939 1.19076 0.96309 0.95557 0.89786 1.21149 1.35150 1.08363 0.90927 0.92617 1.25013 0.95220 0.95073 0.99119 1.69949 1.38689 1.21096 1.23646 0.86675 0.78865 0.80102 0.82459 1.20281 1.21307 1.20283 1.21706 0.99358 0.95274 0.83716 1.45052 1.60270 1.27827 1.02616 1.17181 0.88891 0.90335 0.85250 1.20351 1.12785 1.01206 0.96668 1.16975 0.91187 0.81760 0.93423 1.91467 1.76261 1.47457 1.96886 1.20175 1.14691 0.99666 0.97883 1.17025 0.90415 0.88902 0.86003 1.46245 1.53992 1.30306 1.04270 1.21698 0.99249 1.00900 0.83497 1.21600 0.93617 0.87137 1.02421 1.19953 1.16541 1.05391 0.89759 0.93419 0.91751 0.95119 0.96267 0.96404 0.92906 0.92310 0.92244 0.76530 0.85013 0.85461 0.90197 0.92752 0.93089 0.93422 0.91736 0.91119 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.88 37.16 0.33 -2.00 16 2 C -0.10 -1.83 2.37 -90.62 -0.22 -2.05 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.52 -14.07 8.41 -34.44 -0.29 -14.36 16 6 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.12 2.04 4.30 -4.04 -0.02 2.03 16 14 N -0.73 -10.49 5.46 -58.66 -0.32 -10.81 16 15 C 0.29 4.19 6.65 -83.83 -0.56 3.63 16 16 C -0.29 -4.29 9.29 -39.27 -0.36 -4.66 16 17 C 0.19 2.70 7.29 -39.48 -0.29 2.41 16 18 F -0.14 -2.09 17.26 2.25 0.04 -2.05 16 19 C -0.30 -3.82 9.29 -39.27 -0.36 -4.19 16 20 C 0.28 3.42 6.53 -83.83 -0.55 2.87 16 21 N -0.64 -6.17 3.41 -187.58 -0.64 -6.81 16 22 C 0.09 0.65 10.62 59.85 0.64 1.28 16 23 C 0.10 0.71 10.10 59.85 0.60 1.31 16 24 C -0.29 -3.67 9.00 -39.17 -0.35 -4.02 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.23 6.95 -51.92 -0.36 0.87 16 27 H 0.03 0.45 7.18 -51.93 -0.37 0.07 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 32 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.40 5.16 7.66 -40.82 -0.31 4.85 16 34 H 0.13 2.03 6.72 -52.49 -0.35 1.68 16 35 H 0.13 1.39 5.73 -52.48 -0.30 1.09 16 36 H 0.08 0.58 5.31 -51.93 -0.28 0.30 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 41 H 0.07 0.53 6.45 -51.93 -0.33 0.19 16 42 H 0.12 1.35 6.30 -52.48 -0.33 1.02 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -29.90 341.53 -8.06 -37.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.35 Total: 1.65 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.65 Total: -15.62 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.22 Total: -43.39 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.90 -8.06 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895172021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.312 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds