Wall clock time and date at job start Tue Mar 31 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47659 * 2 1 4 4 C 1.53001 * 109.47434 * 120.00444 * 2 1 3 5 5 C 1.53001 * 109.47204 * 184.99751 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 13 13 C 1.34667 * 126.59223 * 274.68463 * 12 11 9 14 14 N 1.34129 * 108.02423 * 179.87586 * 13 12 11 15 15 C 1.30495 * 109.25543 * 0.39505 * 14 13 12 16 16 N 1.35046 * 108.69884 * 359.75827 * 15 14 13 17 17 H 0.97006 * 126.39812 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.46619 * 240.00124 * 2 1 3 19 19 C 1.36931 * 119.99852 * 85.00105 * 18 2 1 20 20 H 1.08005 * 120.00247 * 359.97438 * 19 18 2 21 21 C 1.38816 * 120.00272 * 179.97438 * 19 18 2 22 22 N 1.31621 * 119.99621 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00386 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47139 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47090 * 120.00233 * 23 21 19 26 26 H 1.48502 * 109.47230 * 240.00223 * 23 21 19 27 27 H 1.09001 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46592 * 299.99564 * 1 2 3 29 29 H 1.08992 * 109.47185 * 59.99485 * 1 2 3 30 30 H 1.08996 * 109.47061 * 64.99418 * 4 2 1 31 31 H 1.08994 * 109.46820 * 304.99531 * 4 2 1 32 32 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 33 33 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 34 34 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 35 35 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 36 36 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 37 37 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 38 38 H 1.08003 * 125.98831 * 0.02562 * 13 12 11 39 39 H 1.08001 * 125.65401 * 179.72968 * 15 14 13 40 40 H 0.97000 * 119.99609 * 264.99961 * 18 2 1 41 41 H 0.96994 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4385 2.4922 8 7 3.9481 0.7892 1.4923 9 6 5.1592 1.2145 1.0814 10 8 5.9337 0.4350 0.5683 11 6 5.5509 2.6587 1.2598 12 6 6.9427 2.8717 0.7225 13 6 8.0982 2.6689 1.3838 14 7 9.1089 2.9708 0.5554 15 6 8.6236 3.3611 -0.5914 16 7 7.2754 3.3140 -0.5294 17 1 6.6579 3.5500 -1.2394 18 7 2.0182 -0.6906 -1.1963 19 6 2.1489 -0.0075 -2.3758 20 1 1.8917 1.0404 -2.4244 21 6 2.6120 -0.6617 -3.5092 22 7 2.9250 -1.9387 -3.4501 23 14 2.7897 0.2701 -5.1184 24 1 2.3749 1.6823 -4.9211 25 1 4.2066 0.2280 -5.5609 26 1 1.9294 -0.3592 -6.1523 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -1.7715 1.2055 31 1 1.6055 -0.2618 2.1369 32 1 3.8002 -2.4821 2.3592 33 1 5.1716 -1.3620 2.5378 34 1 3.6548 -1.0596 3.4191 35 1 3.3286 1.4127 1.9027 36 1 4.8508 3.2947 0.7179 37 1 5.5280 2.9134 2.3193 38 1 8.1942 2.3215 2.4019 39 1 9.2039 3.6708 -1.4480 40 1 2.2489 -1.6318 -1.1527 41 1 3.2482 -2.3960 -4.2421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135575613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:02 Heat of formation + Delta-G solvation = 19.576057 kcal Electronic energy + Delta-G solvation = -22283.248202 eV Core-core repulsion = 19006.034103 eV Total energy + Delta-G solvation = -3277.214098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96445 -39.44578 -36.84796 -34.44942 -32.81490 -32.22171 -31.80845 -30.41862 -28.62534 -26.92817 -26.30221 -23.65404 -21.95989 -21.38897 -20.73825 -20.20567 -19.72507 -17.87604 -17.33861 -16.83256 -15.81199 -15.20539 -14.77042 -14.67083 -14.19734 -13.98028 -13.73629 -13.55354 -13.39990 -13.13473 -12.94316 -12.72762 -12.27727 -12.09499 -11.89373 -11.75243 -11.60556 -11.05658 -10.87922 -10.64435 -10.43364 -10.23931 -9.97304 -9.93265 -9.91177 -9.65912 -9.54315 -8.91692 -8.69275 -8.29916 -6.94778 -5.76280 -3.04203 2.06108 2.94755 3.14884 3.24386 3.40205 3.43683 3.48039 3.61072 4.57827 4.60210 4.84347 4.97707 5.03630 5.20221 5.32935 5.41341 5.46539 5.48911 5.59528 5.68559 5.70197 5.88653 5.95173 6.00255 6.12061 6.25896 6.27696 6.36471 6.42437 6.55494 6.71256 6.79159 6.80177 6.92850 7.04817 7.42223 7.67707 7.80752 8.11879 8.42069 8.57236 9.53126 10.11536 10.45501 11.46590 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.005930 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.430176 B = 4720.878063 C = 6280.188081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.521 6.521 11 C -0.067 4.067 12 C 0.000 4.000 13 C -0.013 4.013 14 N -0.497 5.497 15 C 0.184 3.816 16 N -0.560 5.560 17 H 0.420 0.580 18 N -0.721 5.721 19 C -0.234 4.234 20 H 0.066 0.934 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.292 1.292 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.393 0.607 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.206 0.794 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 10.303 12.660 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.122 0.878 7 C -0.219 4.219 8 N -0.369 5.369 9 C 0.295 3.705 10 O -0.396 6.396 11 C -0.108 4.108 12 C -0.117 4.117 13 C -0.161 4.161 14 N -0.216 5.216 15 C -0.100 4.100 16 N -0.163 5.163 17 H 0.258 0.742 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.084 0.916 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.219 1.219 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.227 0.773 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.182 0.818 39 H 0.223 0.777 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.297 9.773 12.367 16.104 hybrid contribution -1.409 0.554 -1.447 2.094 sum 1.888 10.327 10.920 15.148 Atomic orbital electron populations 1.22460 0.99562 1.00833 0.99723 1.20217 0.91523 0.95453 0.86599 0.93750 1.22166 0.93832 1.02201 0.98740 1.21009 0.94950 0.80207 0.99816 0.87798 1.22176 1.01548 1.00162 0.98005 1.45947 1.16499 1.11631 1.62822 1.20324 0.82093 0.89654 0.78404 1.90774 1.50702 1.56276 1.41826 1.20054 0.92002 0.95398 1.03360 1.20465 0.96417 1.08127 0.86645 1.21947 0.87343 1.06369 1.00479 1.70237 1.32486 1.17291 1.01611 1.24878 0.80789 1.05032 0.99275 1.43219 1.09156 1.50919 1.12976 0.74206 1.42407 1.77966 1.10589 1.05265 1.19172 1.36380 0.93639 0.87383 0.91559 1.24706 1.02276 0.95944 0.97924 1.69651 1.50862 1.08601 1.28682 0.86204 0.77303 0.78689 0.84484 1.20777 1.21986 1.21879 0.93519 0.94710 0.92964 0.90683 0.92051 0.91832 0.92510 0.93148 0.77325 0.88271 0.86862 0.81759 0.77744 0.78334 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.26 2.52 -67.93 -0.17 2.08 16 6 H 0.10 2.20 7.05 -51.93 -0.37 1.83 16 7 C -0.16 -2.17 9.49 37.16 0.35 -1.82 16 8 N -0.72 -9.60 4.45 -53.81 -0.24 -9.84 16 9 C 0.51 7.78 7.79 -10.99 -0.09 7.70 16 10 O -0.52 -10.81 15.69 5.55 0.09 -10.72 16 11 C -0.07 -0.72 6.26 -29.04 -0.18 -0.90 16 12 C 0.00 0.00 5.73 -81.60 -0.47 -0.47 16 13 C -0.01 -0.19 11.79 -17.81 -0.21 -0.40 16 14 N -0.50 -7.67 11.25 -14.66 -0.16 -7.83 16 15 C 0.18 2.32 13.04 -90.38 -1.18 1.14 16 16 N -0.56 -6.87 6.15 -10.30 -0.06 -6.93 16 17 H 0.42 4.18 8.96 -40.82 -0.37 3.82 16 18 N -0.72 -17.30 4.49 -53.42 -0.24 -17.54 16 19 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 20 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 23 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.39 3.91 8.60 -40.82 -0.35 3.56 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.17 2.06 8.06 -52.48 -0.42 1.63 16 39 H 0.21 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -36.28 348.28 -8.23 -44.51 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -6.41 Total: 14.37 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.14 Total: -1.16 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: 0.02 Total: -69.68 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.28 -8.23 -44.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.087 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds