Wall clock time and date at job start Tue Mar 31 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.50705 * 109.46669 * 180.02562 * 11 9 8 13 13 C 1.34674 * 126.58798 * 274.68299 * 12 11 9 14 14 N 1.34127 * 108.01650 * 179.87781 * 13 12 11 15 15 C 1.30503 * 109.25853 * 0.40355 * 14 13 12 16 16 N 1.35046 * 108.69492 * 359.75123 * 15 14 13 17 17 H 0.97003 * 126.39271 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 2 1 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 2 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 31 31 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 32 32 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 34 34 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 35 35 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 36 36 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 37 37 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 38 38 H 1.07996 * 125.99230 * 0.02701 * 13 12 11 39 39 H 1.07999 * 125.65177 * 179.73858 * 15 14 13 40 40 H 0.97004 * 119.99747 * 95.00774 * 18 2 1 41 41 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3390 -1.1582 1.7465 13 6 8.5052 -1.4950 1.1630 14 7 9.4759 -0.7542 1.7181 15 6 8.9568 0.0226 2.6292 16 7 7.6254 -0.1981 2.6790 17 1 6.9906 0.2420 3.2658 18 7 2.0183 -0.6906 1.1962 19 6 2.1490 -0.0075 2.3758 20 1 1.8918 1.0403 2.4244 21 6 2.6122 -0.6617 3.5091 22 7 2.9205 -1.9400 3.4511 23 14 2.7899 0.2699 5.1184 24 1 3.2931 -0.6500 6.1700 25 1 3.7495 1.3891 4.9391 26 1 1.4684 0.8113 5.5254 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 5.1509 -1.1482 -2.6697 33 1 3.7724 -2.2740 -2.6699 34 1 3.6264 -0.6885 -3.4657 35 1 3.6648 -2.0583 0.2386 36 1 5.3354 -1.6299 2.3092 37 1 6.0816 -2.7879 1.1820 38 1 8.6355 -2.2306 0.3832 39 1 9.5017 0.7253 3.2421 40 1 2.2490 -1.6318 1.1526 41 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135575615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:07 Heat of formation + Delta-G solvation = 25.543122 kcal Electronic energy + Delta-G solvation = -23012.431306 eV Core-core repulsion = 19735.475959 eV Total energy + Delta-G solvation = -3276.955347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68589 -39.30762 -36.95051 -34.42109 -32.70775 -32.32114 -31.53348 -30.35241 -28.38551 -26.64550 -26.36077 -23.61359 -21.82939 -21.12827 -20.48969 -20.40351 -19.69044 -17.56137 -17.50110 -16.57603 -15.80530 -15.13277 -14.75945 -14.46197 -14.18663 -13.91612 -13.71281 -13.32131 -13.25646 -13.12077 -13.03994 -12.56009 -12.25138 -12.10517 -11.80215 -11.66178 -11.61499 -11.12317 -10.89507 -10.59941 -10.47976 -10.19396 -10.11420 -9.72701 -9.67010 -9.31518 -9.29830 -9.08614 -8.46627 -8.01535 -7.13117 -6.22938 -3.22046 2.37226 3.24289 3.36924 3.40327 3.42480 3.51044 3.57999 3.87225 4.51957 4.93151 4.97848 5.17184 5.25642 5.34421 5.42701 5.49718 5.53632 5.56948 5.74308 5.77380 5.86748 5.89655 5.94862 6.03060 6.09374 6.11619 6.26953 6.31108 6.39946 6.47532 6.62889 6.72844 6.92173 7.05382 7.06826 7.69422 7.70438 8.06533 8.35938 8.59374 8.81198 9.07582 9.92279 10.09285 11.23367 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.007837 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.542899 B = 3571.849587 C = 5392.626881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.082 0.918 7 C -0.162 4.162 8 N -0.701 5.701 9 C 0.529 3.471 10 O -0.551 6.551 11 C -0.078 4.078 12 C 0.019 3.981 13 C -0.024 4.024 14 N -0.498 5.498 15 C 0.174 3.826 16 N -0.557 5.557 17 H 0.421 0.579 18 N -0.727 5.727 19 C -0.312 4.312 20 H 0.061 0.939 21 C -0.047 4.047 22 N -0.944 5.944 23 Si 1.070 2.930 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.296 1.296 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.399 0.601 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.163 0.837 39 H 0.203 0.797 40 H 0.361 0.639 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 0.008 -6.063 6.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.100 0.900 7 C -0.220 4.220 8 N -0.353 5.353 9 C 0.315 3.685 10 O -0.429 6.429 11 C -0.119 4.119 12 C -0.098 4.098 13 C -0.172 4.172 14 N -0.218 5.218 15 C -0.110 4.110 16 N -0.160 5.160 17 H 0.259 0.741 18 N -0.372 5.372 19 C -0.444 4.444 20 H 0.079 0.921 21 C -0.243 4.243 22 N -0.591 5.591 23 Si 0.901 3.099 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.223 1.223 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.180 0.820 39 H 0.220 0.780 40 H 0.196 0.804 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.951 0.708 -5.047 6.448 hybrid contribution -2.065 -0.067 -0.813 2.220 sum 1.886 0.641 -5.860 6.189 Atomic orbital electron populations 1.22401 0.99192 1.00677 1.00052 1.20220 0.91644 0.95671 0.85953 0.93373 1.22220 0.94154 1.01503 0.99417 1.20778 0.92330 0.97267 0.85011 0.90037 1.22203 1.01872 1.00769 0.97198 1.45928 1.17865 1.37602 1.33891 1.20251 0.81173 0.83532 0.83570 1.90656 1.61835 1.30904 1.59541 1.20164 0.91966 0.99858 0.99879 1.20574 0.96749 0.96373 0.96153 1.21881 0.88086 1.03872 1.03397 1.70187 1.32908 1.08860 1.09824 1.24779 0.81186 1.03312 1.01690 1.43235 1.10035 1.31740 1.30975 0.74073 1.42475 1.79059 1.09298 1.06324 1.20039 1.40377 0.94960 0.89015 0.92091 1.25550 1.00234 0.97557 1.01006 1.70973 1.52416 1.07818 1.27889 0.83352 0.76155 0.74271 0.76080 1.21013 1.22616 1.22342 0.93703 0.92854 0.94419 0.91839 0.90723 0.92306 0.92814 0.92159 0.76455 0.85642 0.87468 0.81992 0.77995 0.80425 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.17 3.14 2.89 -67.93 -0.20 2.95 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.93 4.43 -26.73 -0.12 -2.05 16 5 C 0.15 2.35 2.58 -67.93 -0.17 2.17 16 6 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 8 N -0.70 -11.74 3.80 -53.81 -0.20 -11.95 16 9 C 0.53 9.88 7.79 -10.98 -0.09 9.79 16 10 O -0.55 -12.00 15.70 5.56 0.09 -11.91 16 11 C -0.08 -1.33 6.26 -29.03 -0.18 -1.51 16 12 C 0.02 0.33 5.73 -81.60 -0.47 -0.14 16 13 C -0.02 -0.43 11.79 -17.81 -0.21 -0.64 16 14 N -0.50 -8.81 11.25 -14.66 -0.16 -8.97 16 15 C 0.17 2.62 13.04 -90.37 -1.18 1.44 16 16 N -0.56 -8.90 6.15 -10.30 -0.06 -8.96 16 17 H 0.42 6.14 8.96 -40.82 -0.37 5.77 16 18 N -0.73 -15.51 3.84 -53.43 -0.21 -15.71 16 19 C -0.31 -7.80 9.93 -15.06 -0.15 -7.95 16 20 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 21 C -0.05 -1.19 5.50 -17.43 -0.10 -1.29 16 22 N -0.94 -24.66 13.44 55.49 0.75 -23.91 16 23 Si 1.07 23.75 29.92 -169.99 -5.09 18.67 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.30 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 6.58 6.51 -40.82 -0.27 6.31 16 36 H 0.13 2.44 7.88 -51.93 -0.41 2.03 16 37 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.36 7.67 4.54 -40.82 -0.19 7.48 16 41 H 0.25 6.32 6.77 -40.82 -0.28 6.04 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -30.87 341.87 -8.07 -38.94 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -6.17 Total: 20.03 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.15 Total: -1.38 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: 0.11 Total: -69.50 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.09 Total: 18.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.87 -8.07 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.480 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds