Wall clock time and date at job start Tue Mar 31 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.50705 * 109.46669 * 180.02562 * 11 9 8 13 13 C 1.34674 * 126.58798 * 274.68299 * 12 11 9 14 14 N 1.34127 * 108.01650 * 179.87781 * 13 12 11 15 15 C 1.30503 * 109.25853 * 0.40355 * 14 13 12 16 16 N 1.35046 * 108.69492 * 359.75123 * 15 14 13 17 17 H 0.97003 * 126.39271 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 2 1 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 2 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 31 31 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 32 32 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 34 34 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 35 35 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 36 36 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 37 37 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 38 38 H 1.07996 * 125.99230 * 0.02701 * 13 12 11 39 39 H 1.07999 * 125.65177 * 179.73858 * 15 14 13 40 40 H 0.97004 * 119.99747 * 95.00774 * 18 2 1 41 41 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3390 -1.1582 1.7465 13 6 8.5052 -1.4950 1.1630 14 7 9.4759 -0.7542 1.7181 15 6 8.9568 0.0226 2.6292 16 7 7.6254 -0.1981 2.6790 17 1 6.9906 0.2420 3.2658 18 7 2.0183 -0.6906 1.1962 19 6 2.1490 -0.0075 2.3758 20 1 1.8918 1.0403 2.4244 21 6 2.6122 -0.6617 3.5091 22 7 2.9205 -1.9400 3.4511 23 14 2.7899 0.2699 5.1184 24 1 3.2931 -0.6500 6.1700 25 1 3.7495 1.3891 4.9391 26 1 1.4684 0.8113 5.5254 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 5.1509 -1.1482 -2.6697 33 1 3.7724 -2.2740 -2.6699 34 1 3.6264 -0.6885 -3.4657 35 1 3.6648 -2.0583 0.2386 36 1 5.3354 -1.6299 2.3092 37 1 6.0816 -2.7879 1.1820 38 1 8.6355 -2.2306 0.3832 39 1 9.5017 0.7253 3.2421 40 1 2.2490 -1.6318 1.1526 41 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135575615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:07 Heat of formation + Delta-G solvation = 6.388654 kcal Electronic energy + Delta-G solvation = -23013.261906 eV Core-core repulsion = 19735.475959 eV Total energy + Delta-G solvation = -3277.785947 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.95327 -40.73785 -38.44101 -35.99395 -34.29430 -33.70101 -32.89699 -31.71477 -30.01720 -27.91709 -27.62350 -25.47651 -23.14631 -22.39086 -21.86301 -21.74070 -21.11994 -19.36173 -18.81373 -18.01128 -17.14957 -16.74642 -16.18800 -15.89327 -15.76900 -15.43810 -15.16576 -14.67656 -14.60177 -14.45957 -14.32230 -13.90672 -13.57132 -13.46298 -13.16470 -12.97104 -12.88886 -12.69983 -12.53827 -12.19464 -11.89018 -11.78895 -11.63029 -11.12274 -11.05472 -10.98683 -10.87634 -10.78160 -9.89505 -9.31016 -8.92473 -8.22356 -5.15615 1.09640 1.57874 1.63049 1.77504 1.80914 2.15189 2.27106 2.55925 2.70896 3.49062 3.68468 3.72569 3.85299 3.95878 4.07678 4.16708 4.22105 4.30363 4.48331 4.55152 4.60919 4.65001 4.74505 4.76022 4.79177 4.85644 5.00268 5.03269 5.08740 5.30865 5.32469 5.33129 5.52856 5.70252 5.73234 5.77267 6.50887 6.64013 6.67267 7.09803 7.22421 7.38435 8.10143 8.24370 9.27301 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.007837 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.542899 B = 3571.849587 C = 5392.626881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.025 0.975 4 C -0.120 4.120 5 C 0.148 3.852 6 H 0.051 0.949 7 C -0.151 4.151 8 N -0.694 5.694 9 C 0.524 3.476 10 O -0.587 6.587 11 C -0.067 4.067 12 C -0.003 4.003 13 C -0.035 4.035 14 N -0.529 5.529 15 C 0.186 3.814 16 N -0.561 5.561 17 H 0.426 0.574 18 N -0.730 5.730 19 C -0.316 4.316 20 H 0.044 0.956 21 C -0.085 4.085 22 N -0.959 5.959 23 Si 1.105 2.895 24 H -0.291 1.291 25 H -0.287 1.287 26 H -0.293 1.293 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.174 0.826 39 H 0.246 0.754 40 H 0.362 0.638 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -0.166 -6.896 7.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.158 4.158 5 C 0.043 3.957 6 H 0.069 0.931 7 C -0.209 4.209 8 N -0.345 5.345 9 C 0.311 3.689 10 O -0.468 6.468 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.183 4.183 14 N -0.249 5.249 15 C -0.097 4.097 16 N -0.164 5.164 17 H 0.265 0.735 18 N -0.375 5.375 19 C -0.448 4.448 20 H 0.062 0.938 21 C -0.279 4.279 22 N -0.607 5.607 23 Si 0.934 3.066 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.221 1.221 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.238 0.762 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.191 0.809 39 H 0.262 0.738 40 H 0.196 0.804 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.482 0.529 -5.916 6.885 hybrid contribution -1.957 0.043 -0.579 2.042 sum 1.524 0.572 -6.495 6.696 Atomic orbital electron populations 1.22263 0.97749 1.00980 1.00352 1.20402 0.92582 0.94689 0.86389 0.95713 1.22129 0.92990 1.02109 0.98590 1.20887 0.93214 0.95733 0.85820 0.93071 1.22097 1.00617 1.01951 0.96273 1.45962 1.17220 1.37305 1.33985 1.20536 0.81490 0.83134 0.83705 1.90630 1.62836 1.32467 1.60853 1.20065 0.91416 1.01095 0.98176 1.20678 0.96781 0.97366 0.97148 1.22165 0.88186 1.04221 1.03693 1.70202 1.33436 1.10076 1.11193 1.25674 0.80890 1.02490 1.00678 1.43333 1.10635 1.31570 1.30886 0.73534 1.42495 1.79332 1.09262 1.06414 1.20113 1.39769 0.94430 0.90503 0.93754 1.26386 1.00519 0.97845 1.03139 1.71021 1.53458 1.08235 1.28002 0.82856 0.76323 0.73746 0.73673 1.21729 1.21338 1.22068 0.93305 0.95460 0.91227 0.90371 0.87506 0.94250 0.91065 0.89824 0.76187 0.87867 0.85131 0.80902 0.73778 0.80352 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.17 5.87 2.89 44.99 0.13 6.00 16 3 H 0.02 0.98 8.08 -2.38 -0.02 0.96 16 4 C -0.12 -3.15 4.43 30.60 0.14 -3.01 16 5 C 0.15 4.42 2.58 44.99 0.12 4.54 16 6 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 7 C -0.15 -3.64 9.48 71.98 0.68 -2.95 16 8 N -0.69 -22.99 3.80 -442.53 -1.68 -24.67 16 9 C 0.52 19.77 7.79 87.66 0.68 20.46 16 10 O -0.59 -26.00 15.70 -3.03 -0.05 -26.05 16 11 C -0.07 -2.29 6.26 29.11 0.18 -2.11 16 12 C 0.00 -0.10 5.73 40.96 0.23 0.14 16 13 C -0.04 -1.23 11.79 83.52 0.98 -0.24 16 14 N -0.53 -18.29 11.25 -200.31 -2.25 -20.54 16 15 C 0.19 5.35 13.04 180.26 2.35 7.70 16 16 N -0.56 -17.65 6.15 -186.49 -1.15 -18.80 16 17 H 0.43 12.29 8.96 -92.71 -0.83 11.45 16 18 N -0.73 -31.01 3.84 -322.94 -1.24 -32.25 16 19 C -0.32 -15.90 9.93 84.03 0.83 -15.06 16 20 H 0.04 2.34 7.83 -2.91 -0.02 2.32 16 21 C -0.09 -4.34 5.50 84.86 0.47 -3.88 16 22 N -0.96 -50.11 13.44 21.65 0.29 -49.82 16 23 Si 1.11 48.07 29.92 68.60 2.05 50.12 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.40 12.98 6.51 -92.71 -0.60 12.38 16 36 H 0.10 4.08 7.88 -2.39 -0.02 4.06 16 37 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.17 5.32 8.06 -2.91 -0.02 5.29 16 39 H 0.25 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.36 15.21 4.54 -92.71 -0.42 14.79 16 41 H 0.25 12.57 6.77 -92.71 -0.63 11.94 16 Total: -1.00 -67.00 341.87 2.79 -64.21 By element: Atomic # 1 Polarization: 51.07 SS G_CDS: -0.66 Total: 50.40 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 7.48 Total: 7.39 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -6.03 Total: -146.08 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Total: -67.00 2.79 -64.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.599 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds